Ochotona princeps (American pika): 101525093
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Entry
101525093 CDS
T07609
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101525093 (SHOC1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Meiosis-specific proteins
Others
101525093 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Motif
Other DBs
NCBI-GeneID:
101525093
NCBI-ProteinID:
XP_036352634
LinkDB
All DBs
Position
1A:18050444..18110271
Genome browser
AA seq
1536 aa
AA seq
DB search
MFPALKYCALNYEYENEARKRFYRDALMLRVPSSFYQDGNYLVGVTDTKYRRPWTRISAV
SVWGETNTVWDEWKAVFPVEDSIEKKTPTRMVTQVNCESEEIVPSSNPNSQPEEEENTFC
IHNDCFEVFTPVKYSECLSPQSKVQDLFIDEEFVFVDSLKNYRNQLPTVKTLLSRLKLYV
IKDPLDDFKQIFKDDNWESLSVEGNTEVFTKEDFSVPAETFCKVELEDEDLDESLLFLPA
VESLISAHVEQEVGISSLSDLKETLDIMPEKIQYVDEKEQLQGDIIFKYGIEIEDKKYSS
AKIWTTENESEPESDEPGELELPLSQPHLSNQHSSVNSLCAGLHTVPLSPAYFHRSSVLN
SPRPCCPDFTQQRCSQQKLPQCSALAACAATPLLEACERLKGGCVHALQSQMREPPPSRS
PALSQTHTIVCEYNNQCSVTHFKNMLSIQEHFAAEPGKAECWEKASLTQNQTETLENPDM
PLCHDPSDTEMDMLLPENIVQIESCLENKSCSSPTILNNEKSTNVHFSPPQNSPPMAEVT
EICFPDGFVSTQTPTKEETPKNDQELVDGIIHENENNDLFELECIGPSTELSSRISKAPC
EHHKEWDKCLDPLSDFIMLRNKHMTCTSRTEVTNNEEKEDKEEYSLPLQEKSPIVSADKT
PENLIPKWGVDNVIEIQASESQCQAYCLLEAAAAPVLKKLACLWPLPVTNWKFATVTFDE
TRFFLKEQEKIINDAVHQGTNDEREMTFKYAAVLHLLVTTRDVLLTCSLDTALGYLSNAK
DVYRSIVGSCLDDIWRQLDIVQFTNDKKSEVNYRIQELQCQILNWMQDQQQIKVLIIIRM
DSDIEKHLLIKILSKIEGLTLTVHHSNEGKEFLESSPLLNGTSSCVIIHNQYIGANFPWG
NFSFVVEYNYVENSYWTTHCKKLNIPYVRLKVILPDTVLQGSTSLDTFHGFPLEIQIPYV
FFASDGLLNTPEILQLLESNYNILLVERGCSESLKLFGSTEHYAVVTVDEHTAIVLQNLE
ELNYEKASDNIIMRLMALSFQYSYCWLILYKKETINSEYHLTEKTLHHLALIYAALVSSG
LKSAELDVKLIIAPGVEETALIIRQIADHSLMTSKREPHDWLNKSWLEISPSKEELYLLD
FPSINPLVAQLMLNKGSSLHGLLLANLCQLQEVLPEVPEKVLKHFCSITSLFKINSSTTE
SPQISLPQEDGNQTSAFTSQSLPCNSSDSITKQYNAFYQYSDSGARVPEDTDTTSTYNIS
HVELRKMPPILSSADSYNQNNYWKDFGCRPDIIPNNPCPMNMAPRRAAWSSFLNRNDSDS
DVFSLGQTQISCEDTMPPVDPQKGAAPRFTNYQKKQAQEAKGPTNKEVFAPIFSLMGYQS
PHLNLKRNAREPQAHSFHLHRGLEQTTWKECCFQPDNAVTHQPKYRLGESGDFTWQRPDA
GIQRTSRGGFPSIPSLDFPHAPDSNVNQKEFNNISLYQRTGESIGQKRHLESSSNSGVKE
ALTDFMYPQLAQFKKRRLTYEKVPGRADGQTRLRFF
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagcactcaaatattgtgcactaaattatgaatatgagaatgaagctagaaag
agattttacagagatgctttaatgctgcgagtgccttcaagtttctatcaagatggaaat
tatcttgtgggagtcactgatactaagtataggaggccatggacaagaatctcagctgtt
tcggtttggggagagacaaacacagtgtgggatgaatggaaagcagtattccctgtggag
gattccatcgagaaaaaaacacctacaagaatggtgactcaagttaattgtgaatctgaa
gaaattgttccaagttcaaatccaaactcgcagcctgaggaagaagaaaacacattttgt
atccacaacgactgctttgaggtcttcacacctgtcaagtactcagaatgcttgtcacct
cagtcgaaggtccaagatttatttattgatgaagaattcgtttttgtggatagtttgaag
aactatagaaatcaactaccaactgtgaaaactctcttgagtagactaaaactatatgtc
ataaaggatccgcttgatgatttcaaacagatcttcaaagatgataattgggaatcttta
tcagttgaaggaaatacggaagtttttacaaaagaagatttttctgtgcctgcagagacc
ttttgtaaagtggaactagaagatgaagatttagatgagtcattgctttttcttcctgcc
gttgaatccttaatatctgcacatgttgaacaagaagttggtatttcatcactgtcagac
ctaaaggagacattagacataatgccagaaaaaatacagtatgtagatgaaaaggagcag
ctacaaggagacattattttcaagtatggaattgaaattgaggataagaaatacagttcc
gcgaagatttggaccactgaaaatgagagtgagccagagtctgatgaaccaggagagtta
gaacttcctctaagtcagccacacctttcaaatcaacattcttcagtgaattcattatgt
gcaggccttcacacagttccattatctcctgcttactttcaccgaagcagcgtgttgaac
tcccctcgaccttgctgccccgacttcacacagcagaggtgctctcagcagaagctgcct
cagtgctccgccttagcagcttgtgctgccacgcctcttcttgaggcttgtgaaaggctg
aagggagggtgtgtgcatgccttacagtcccagatgcgcgagcctccaccttcgaggtca
ccagccctgtctcagacacacaccattgtttgtgagtacaacaatcagtgttcagttaca
cattttaaaaatatgctttctattcaagaacactttgcagctgagcctggaaaggcagag
tgctgggagaaagcaagtctgactcaaaaccagacagaaactttggaaaacccagacatg
cctttatgtcatgatcccagtgacaccgaaatggatatgcttttgccagaaaacattgtt
caaatagaatcatgtctagagaataaaagttgttcatcacctactatacttaataatgag
aaatctacaaatgttcatttttcacctccacaaaatagtccacctatggcagaagtgaca
gaaatatgttttcctgatggttttgtctctactcaaacaccaacaaaagaagaaacacca
aagaatgatcaagagctagttgatggaataatccatgaaaatgaaaataacgatctcttt
gaacttgagtgcataggaccatctactgaattatcttcaagaattagcaaagcaccttgt
gagcaccataaagagtgggataaatgtttggaccctctaagcgattttattatgctgaga
aataaacatatgacttgtacatcaagaactgaagtcacaaacaatgaagaaaaagaggat
aaagaagaatattcattgcctcttcaggaaaaaagtcctattgtctctgctgataaaacc
cctgagaacctaattccaaaatggggagtagataatgtcattgaaattcaagcatcagag
agtcagtgccaagcatactgtcttctagaagctgcagctgctcctgtcttgaaaaagctt
gcgtgcctctggcctctccctgtcactaattggaaatttgccactgtcacttttgatgaa
acaaggttcttcttaaaggaacaagaaaaaataataaatgatgctgttcaccaaggtaca
aatgatgaaagagaaatgacgttcaagtacgctgctgtcttgcaccttctggtaactact
agggatgtgcttctaacgtgcagcttagacacagcattaggatatttgtcaaatgcaaaa
gatgtctacagaagtattgtgggctcttgtttggatgacatttggagacagctggacatt
gtacaatttactaatgacaaaaagtctgaagttaactacagaatacaggaattgcaatgt
cagattttaaattggatgcaagatcaacagcaaattaaggtgctgattataataagaatg
gattcagatattgaaaaacatttactcattaaaatcctatccaaaatagaaggtttaaca
cttactgtccatcactcgaatgaaggaaaagagtttctggaatctagtcctcttttaaat
ggtacaagttcctgtgtaattatacacaatcaatatattggagccaacttcccctgggga
aatttctcatttgtggtggaatacaattacgtagaaaattcttattggactacacactgc
aaaaaattgaatatcccttacgtacgcttaaaagtgattcttccagacacagttttacag
ggaagtacttcactggatacatttcatggctttcctttggaaatacagattccatatgtg
ttttttgcatctgatggacttcttaatactccggaaatacttcaattgctagaatccaat
tacaatatccttctggtggagagaggctgcagtgagtcgttgaagctctttggaagcaca
gagcattatgcagtggtgacagtcgatgagcacactgccatcgttttgcagaacctagaa
gaactgaattatgagaaggcatcagacaatatcattatgagactcatggctttgtcattt
cagtacagctattgttggctaattttatataaaaaagaaacaataaattcagagtaccat
cttacagaaaagacgcttcatcatctagcactgatatatgcagctttggtttcatctggg
ctaaaatctgcagaactggatgtaaagcttataattgccccaggagtagaagaaactgca
ctgataattcgacaaattgctgaccacagtttaatgacctccaagagagagcctcatgat
tggttgaataaatcctggcttgaaatttcaccatctaaggaagaactgtatttacttgat
ttccccagtattaacccgctggtggctcagctcatgttaaataaaggatcttctctgcat
gggctgttattagcgaatctgtgtcaacttcaggaagttctccctgaagttccagaaaaa
gtgttaaagcatttttgcagcatcacttccttgttcaagattaattcttccacaacagaa
tcacctcaaatttcattacctcaggaagacgggaatcagaccagtgcctttacttctcag
agtttaccttgcaactcttcagactccatcactaaacaatacaatgctttttaccaatat
tcagattcaggggccagagtgccggaggacacagacaccacttcaacttacaatatttcc
catgtggaattaagaaaaatgcctcccattttatcatctgcagattcttataaccagaac
aactactggaaagactttggttgtagacctgacataatcccaaataatccttgtccaatg
aatatggcaccaaggagagcggcttggagctcatttctaaaccggaatgattcagattca
gatgtcttttctttgggtcaaacacagatcagttgtgaagacacaatgccaccagttgac
cctcagaagggagctgcccctcgttttacaaattatcagaaaaagcaagcacaggaagcc
aaaggacccacaaacaaggaagtatttgcccccatcttttcactaatgggctatcagtct
cctcacttgaacttgaagagaaatgctcgggaaccacaggctcactcgttccacttgcac
cgtggcttggaacagactacatggaaggagtgctgctttcagccagacaacgcagtcact
catcaaccgaaataccgcttgggggagtcaggagacttcacgtggcagaggccagatgct
gggattcaaaggacttccaggggaggcttcccgtccattcccagtttagattttccccat
gctcctgattctaatgtaaatcagaaagaattcaataacatttctttataccaaagaact
ggagaatctataggtcagaaaagacatcttgaaagttcatctaactcaggagttaaggaa
gcactgacagatttcatgtacccacaattagcacagttcaagaagcgacgtctcacatat
gaaaaagtccctgggagagctgatggacaaacccggctgagatttttttga
DBGET
integrated database retrieval system
