Ochotona princeps (American pika): 101525138
Help
Entry
101525138 CDS
T07609
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101525138 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opi03041
]
101525138 (PRPF4)
Spliceosome [BR:
opi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
101525138 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_WDR41
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
Ge1_WD40
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
101525138
NCBI-ProteinID:
XP_004594990
LinkDB
All DBs
Position
1A:complement(16772133..16788173)
Genome browser
AA seq
521 aa
AA seq
DB search
MASSRASSTATKTKAPDDLVAPVVKKPHIYYGSLEEKERERLAKGEAGILGKEGLKAGIE
AGNINIASGEVFEIEEHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITL
FGEGPAERRERLRNILSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWI
ANYSLPRAMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSP
NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA
DGSVKLWSLESDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ
EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYH
IATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPG
WSPLKTLAGHEGKVMGLDISADGQLIATCSYDRTFKLWMAE
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgtcacgagcctcctccacggcgaccaagactaaggcacctgacgacctcgtg
gcccccgtggtgaagaaaccgcacatctactatggaagcttggaggagaaggaaagggag
cgcctggccaaaggagaagccggaattttaggaaaagaaggactcaaagcaggaatcgag
gcaggaaatattaatatcgcctccggtgaagtatttgaaattgaagagcacatcagtgag
cgacaggcagaagtattggccgagtttgaaaggaggaagcgagcacggcagatcaatgtt
tccacagatgactcggaggtcaaggcttgcctgcgagccttgggggagcctatcacactc
tttggagagggcccagctgaaagaagagaaagattaagaaatattctctcagtggttggt
actgatgccttaaaaaagaccaaaaaagatgatgagaagtccaaaaaatccaaagaagag
tatcagcaaacgtggtaccacgaaggacccaacagcctcaaggtggccagactatggatc
gccaactattccctgcccagggcaatgaaacgcttggaagaggctcggctccataaagag
ataccagagacaacgcggacctcccagatgcaagagctgcacaagtctctccggtctttg
aataatttctgcagtcagattggagatgatcggcctatctcctactgtcactttagtccc
aattctaaaatgctggccacggcttgttggagtggactttgcaagctctggtctgttcct
gactgcaacctcctccacactctgcgaggccataacacaaatgtaggagctattgtattc
catcccaaatccaccgtgtccttagaccaaaaagatgtcaacctggcctcttgtgctgcc
gatggttcagtgaagctctggagccttgagagtgatgaacccgtggcagatattgaaggt
cacacagtgcgtgtggcccgagttatgtggcatccatcaggacgttttctgggcactacc
tgttacgatcgttcctggcgcttgtgggatttggaggcccaggaggagatcctgcaccag
gaaggccacagcatgggtgtgtacgacatagctttccatcaagatggctctttagctggc
actgggggactggatgcatttggtcgagtttgggacctgcgcacaggacgttgtatcatg
tttctagaaggccacctcaaggaaatctatggaataaatttctcccccaatggctaccac
attgcgactggcagcggcgacaacacctgcaaagtgtgggacctgcgacagcggcgctgt
gtctacaccatccctgcccatcagaacttggtgaccggtgtcaagtttgagcctatccat
gggaacttcttgctcactggtgcctatgataacacagctaagatctggacccaccccggc
tggtccccactgaagactctggctgggcatgaaggcaaagtgatgggcctagacatttct
gctgatgggcagctcatagccacttgctcatatgacaggaccttcaagctctggatggct
gaatag
DBGET
integrated database retrieval system
