Ochotona princeps (American pika): 101525154
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Entry
101525154 CDS
T07609
Symbol
DIS3
Name
(RefSeq) exosome complex exonuclease RRP44 isoform X1
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101525154 (DIS3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101525154 (DIS3)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
101525154 (DIS3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
101525154
NCBI-ProteinID:
XP_004577487
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All DBs
Position
8:complement(44674801..44693675)
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AA seq
957 aa
AA seq
DB search
MLKSKTFLKKTRAGGVMKIVREHYLRDDIGCGVPGCAACGAAHEGPVLEPRPRDPASSLC
PQPHYLLPDTNVLLHQIDVLEDPVIRNVIVLQTVLQEVRNRSAPVYKRIRDVTSNQEKHF
YTFTNEHHRETYVEQEQGENANDRNDRAIRVAAKWYNEHLKKLSADNQLQVIFITNDRKN
KEKAVEEGIPAFTCEEYIKSLTANPELVDRLACLSDEGNEIESGKIIFSEHLPLSKLQQG
IKSGLYLQGTFRASRENYLEATVWIHGDTEENKEIILQGLKHLNRAVHEDVVAVELLPKS
QWVAPSSVVLHDEGQNEDDMEKEEERERMLKTAVSEKMLKPTGRVVGIIKRNWRPYCGML
SKSDIKESRRHLFTPADKRIPRIRIETRQASTLEGRRIIVAIDGWPRNSRYPNGHFVKNL
GDVGEKETETEVLLLEHDVPHQPFSQAVLSFLPKMPWSITEKDMKHREDLRHLCVCSVDP
PGCTDIDDALHCRELGNGNLEVGVHIADVSHFIRPGNALDQESARRGTTVYLCEKRIDMV
PELLSSNLCSLRCDVDRLAFSCIWEMNHNAEILKTKFTKSVINSKASLTYAEAQMRIDSA
TMNDDITTSLRGLNKLAKILKRRRIENGALTLSSPEVRFHMDSETHDPIDLQTKELKETN
SMVEEFMLLANISVAKKIHEEFSEHALLRKHPAPPPSNYEILVKAAKSKNLEINTDTAKS
LADSLDRAESSVFPYLNTLLRILATRCMMQAVYFCSGMDNDFHHYGLASPIYTHFTSPIR
RYADIIVHRLLAVAIGADCTYPELTDKHKLADICKNLNFRHKMAQYAQRASVAFHTQLFF
KSKGIVSEEAYILFVRKNAIVVLIPKYGLEGTVFFEEKDKPKPRLVYDDEIPSLKVEDTV
FHVFDKVKVRIMLDASNLQHQKIRMALVEPQIPGVSVPMDISNVDCEPGRKKRKLEK
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagtccaagacgttcctaaagaagacccgcgccggcggcgtgatgaagatcgtg
cgcgagcactacctgcgggacgacatcggctgcggcgtccctggatgcgcggcgtgcggc
gcggcgcacgaggggccggtgctggagccgcggccccgggacccggccagcagcctctgc
ccgcagccgcactacctgctgcccgacaccaacgtgctgctgcaccagattgatgtcctg
gaggaccctgtcatccgcaacgtgattgtgctgcaaacggtcctgcaagaagtgaggaat
cggagtgccccggtgtataagcgaatccgagatgtgaccagtaaccaagagaagcacttc
tatacctttacgaacgagcaccacagagaaacctacgtagagcaagagcagggagagaat
gcaaatgacaggaatgacagagcgattcgagtcgcagcaaaatggtacaacgaacactta
aagaaattgtcagccgacaatcagctacaagttatctttataaccaatgacaggaagaac
aaagagaaagctgtagaggaagggataccagctttcacttgtgaagaatatataaaaagc
ttaactgctaaccctgagctcgtagaccgtcttgcttgtctgtccgatgaagggaatgaa
atagaaagtgggaaaataatattttctgaacatcttccgttaagtaagctacaacaaggt
ataaaatctgggctttacctccaaggaacatttagagccagcagggagaattacttagaa
gctacagtgtggattcatggagacactgaagaaaataaagagataatattgcaaggactt
aaacatttaaaccgagctgttcatgaagacgttgtggctgtggagcttttgcccaagagc
cagtgggtggcaccgtcctctgtggttttacatgatgaaggtcagaatgaagatgatatg
gagaaagaagaggagagagaacgcatgcttaagactgctgtcagtgaaaaaatgttaaaa
cctacaggtagagttgtaggaataataaaaaggaattggagaccgtattgtggtatgctt
tccaagtctgacattaaggagtcaagaagacatctctttacccctgctgataagagaatc
cctcgcattcggatagaaaccagacaggcgtccacattagaaggacgaagaattattgtt
gctattgatggatggcctagaaattccagatatccaaatggacatttcgtaaaaaactta
ggagatgttggtgagaaagagactgaaacagaagtcctgctgcttgagcatgacgtgccc
catcagcccttctcccaggctgtgctcagcttcctgcccaaaatgccttggagcatcact
gaaaaggacatgaagcaccgggaagacctgcggcacctgtgtgtgtgcagcgtggacccc
ccaggctgcacggacatcgacgacgccctgcactgccgagaactgggaaatggaaacctg
gaggtaggggttcacattgctgatgttagccattttattagaccaggaaatgcgttagat
caagaatctgccagaagaggaacaactgtatacctttgtgaaaagagaatcgacatggtt
ccagagttgcttagctccaacttatgttccctgagatgtgacgttgacaggctggcgttt
tcatgtatctgggaaatgaaccataatgccgaaatcttaaaaacaaagtttaccaaaagt
gtcattaattcaaaggcttctcttacatatgccgaggcgcagatgagaattgattcagca
accatgaatgatgatattaccactagtcttcgtggactgaacaaactagctaaaatcctg
aaaagaagaagaatcgaaaatggggctttgactctttcttctccagaagttcgattccac
atggacagtgaaactcacgatcctatagatctacagaccaaggagctcaaagaaacaaat
tccatggtggaggaatttatgttacttgccaatatctctgtagcaaaaaaaattcatgaa
gaattttctgaacatgctcttcttcggaagcatcctgccccacccccatcgaattatgaa
atccttgttaaggcagctaaatccaagaatttggaaatcaacaccgatacggccaaatct
ttggctgactctttggaccgggctgagtcttctgtcttcccctatctaaacaccctgcta
agaatattggccactcgctgcatgatgcaagctgtgtatttctgttctggaatggataat
gattttcatcactatggcttagcatctccaatatatacacatttcacttctcctatccga
agatacgcagacatcattgtccatcggctgttggccgtggctattggagctgactgtacg
tacccagagctgacagacaaacacaagcttgcagatatctgtaaaaatctgaatttccgg
cacaaaatggctcagtatgcccagcgtgcatcagtggcttttcatacccagttatttttc
aaaagcaaaggaatagtaagtgaagaagcctatattctgtttgtaagaaagaatgccatc
gtggtgttaattccaaagtatggtttagaaggtacagtgttttttgaagaaaaggataaa
ccaaagccacggcttgtttatgacgatgagataccttcactcaaagtagaagatacagtg
ttccatgtatttgataaagttaaagtgagaatcatgttagatgcatcaaatcttcaacat
cagaaaatccgaatggccctggtagagcctcagataccaggagtcagcgttcccatggat
atttcaaatgtggactgtgaaccagggagaaagaagaggaagcttgaaaaatag
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