Ochotona princeps (American pika): 101525550
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Entry
101525550 CDS
T07609
Symbol
LRRC4B
Name
(RefSeq) leucine-rich repeat-containing protein 4B
KO
K16360
netrin-G3 ligand
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
101525550 (LRRC4B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
opi04515
]
101525550 (LRRC4B)
Cell adhesion molecules [BR:
opi04515
]
Immunoglobulin superfamily
NGL family
101525550 (LRRC4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_1
LRR_14
ig
LRR_9
V-set
Ig_2
LRRNT
LRR_EndoS
DUF7617
Motif
Other DBs
NCBI-GeneID:
101525550
NCBI-ProteinID:
XP_036348486
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All DBs
Position
5:1535642..1549327
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AA seq
657 aa
AA seq
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MACARGSLCPSLPPGRMSWPHWALLLLWLFSPPLGAGGGGVAMTVAASGGSPPATSCPAA
CSCSNQASRVICTRRELAEVPASIPVNTRYLNLQENGIQVIRTDTFKHLRHLEILQLSKN
LVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNR
VPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNR
LDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPL
HRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFT
CYAPVIVEPPTDLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRVRISVLHDGT
LNFTNVTVQDTGQYTCMVTNSAGNTTASATLNVSAVDPVAAGGAGPSGGGAGGDAAGPAS
SSTTAPAPRSSRPTEKAFTVPITDVTENALKDLDDVMKTTKIIIGCFVAITFMAAVMLVA
FYKLRKQHQLHKHHGPTRTVEIINVEDELPAASAVSVAAAAAAAGAGGVGGDSHLALPAL
ERDHLNHHHYVAAAFKAHYGGAAGGGGCGKGPPGLNSIHEPLLFKSGSKENVQETQI
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgtgcccgcggctccctgtgcccctcactgccgcctggtaggatgtcctggccc
cactgggccctgctcctgctctggctcttctccccgcccctgggggccggcgggggcggt
gtggccatgactgtggctgctagtgggggctccccaccggccacctcctgccctgcagcc
tgctcctgcagcaaccaggccagccgggtgatctgcacacggagagagctggccgaggtg
cctgccagcatccctgtcaacactcgctacctgaacctgcaggagaatggtatccaggtg
atccgcaccgacaccttcaagcacctgcgacacctggagatcctgcagctgagcaagaac
ctggtgcgaaagatcgaggtgggtgccttcaacgggctgcccagcctcaacacgctggag
ctcttcgacaaccggctgaccacggtgcccacgcaggccttcgaatacctgtccaagctg
cgggagctgtggctgcgcaacaaccccatcgagagcatcccctcgtacgccttcaaccgc
gtgccctcgctgcggcgcctggacctgggcgagctcaagcggctcgagtacatctcggag
gcggcctttgaggggctcgtcaacctgcgctacctcaacctgggcatgtgcaacctcaag
gacatccccaacctgacggccctggtgcgcctcgaggagctggagctctcgggcaaccgg
ctggacctcatccggcccggctccttccagggcctcacgagcctgcgcaagctgtggctc
atgcacgcccaggtggccaccatcgagcgcaacgccttcgacgacctcaagtcgctggag
gaactcaacctgtcccacaacaacctgatgtcgctgccgcacgacctcttcacgccgctg
caccgcctcgagcgcgtgcacctgaaccacaacccctggcactgcaactgcgacgtgctg
tggctcagctggtggctcaaggagacggtgcccagcaacaccacgtgctgcgcgcgctgc
cacgcgcccgccggcctcaagggccgctacatcggcgagctggaccagtcgcacttcacc
tgctacgcacccgtcatcgtggagcctcccacggacctcaacgtcacggagggcatggcg
gccgagctcaagtgccgcacgggcacgtccatgacatctgtcaactggctgacgcccaac
ggcacgctcatgacgcacggctcgtaccgcgtgcgcatctccgtccttcacgacggcaca
ctcaacttcaccaacgtcacggtgcaggacacgggccagtacacgtgcatggtcaccaac
tcggccggcaacaccaccgcctccgccacgctcaacgtctcggccgtggaccccgtggcg
gccgggggcgcaggtcccagcggcgggggcgccgggggggacgcggcgggcccggcctcg
tcgtccaccacggcgcccgcgccgcgctcctcgcgccccacggagaaggcgttcactgtg
cccatcacggacgtgacggagaacgccctcaaggacctggacgacgtcatgaagaccacc
aagatcatcatcggctgcttcgtggccatcaccttcatggccgccgtgatgctcgtggcc
ttctacaagctccgcaagcagcaccagttgcacaagcaccacgggcccacgcgcaccgtg
gagatcatcaacgtggaggacgagctgcccgccgcctcggccgtgtccgtggccgcagcc
gccgccgccgcgggtgcgggaggcgtgggcggggacagccacctggccctgccggccctg
gagcgcgaccacctcaaccaccaccactacgtggcggccgccttcaaggcgcactacggc
ggcgccgcgggcggcgggggctgcggcaagggcccgcccggcctcaactccatccacgaa
cctctgctcttcaagagcggctccaaggagaacgtgcaagagacgcagatctga
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