Ochotona princeps (American pika): 101525588
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Entry
101525588 CDS
T07609
Symbol
TRIM54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101525588 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101525588 (TRIM54)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101525588 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
PHP
COG2_C
Sina_RING
UvrD_C
DUF349
SpoIISA_toxin
MIF4G_like_2
DUF5799
DUF1421
zf-RING_11
FUSC
Motif
Other DBs
NCBI-GeneID:
101525588
NCBI-ProteinID:
XP_004582934
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All DBs
Position
2:20604875..20626259
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AA seq
363 aa
AA seq
DB search
MNFTVGFKPLLGDAHSMDSLEKQLLCPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA
EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPAIYKRQKSELSDGIAL
LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQE
EKLQQVRGLIRQYGDHLEASSKLVELAIQSMEEPQMALYLQQAKELINKVGAMSKVELAS
RPEPGYESMDQFSVSVEHVAEMLRTIDFQPGAAGEEDDEEVVLDGDEGGVGPDERPDAPE
GPH
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcaccgtgggtttcaagccgctgctaggggatgcacacagcatggacagcctg
gagaagcagctcctctgccccatctgcctggagatgttctccaagccggtggtcatcctg
ccctgccaacacaacctctgccgcaagtgtgccaatgacgtcttccaggcctccaaccct
ctgtggcagtcccggggctccaccaccgtgtcctcgggaggccgcttccgctgcccgtcc
tgcagacatgaggtggtcctggaccgacacggggtctatggcctgcagagaaacctgctg
gtggagaacatcattgacatctacaagcaggagtcctcacggccactgcattccaaagct
gaacagcatctcatgtgtgaggagcatgaagaagagaagatcaatatctactgcttgagc
tgtgaggtgcccacctgctcgctttgcaaggtctttggggcccacaaggactgcgaggtg
gccccactgcctgccatttacaaacgtcagaagagtgagctcagtgatggcatcgcattg
ctggtggcaggcaacgaccgagtgcaagctgtgatcacacagatggaggaggtgtgccag
accatcgaggacaacagcagaaggcagaagcagttgttaaatcagaggtttgagagtttg
tgcgctgtgctggaggagcgcaagggcgagctgctgcaggcgctggcgcgcgagcaagag
gaaaagctgcagcaggtccgcggcctcatccggcagtacggagaccacttggaggcctcg
agcaagctggtggagttggccatccagtccatggaggagccgcagatggcgctctacctt
cagcaagccaaggagctgatcaataaggtcggggcgatgtccaaggtggagctggcgagt
cggccagagccgggctacgagagtatggaccagttctcagtgagcgtggagcatgtggct
gaaatgctgaggaccatcgacttccagccaggtgctgccggggaggaagacgatgaagaa
gtggtgttggatggggatgaaggcggcgtagggccagatgagcggccggacgcgccggaa
gggccgcactga
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integrated database retrieval system
