Ochotona princeps (American pika): 101525994
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Entry
101525994 CDS
T07609
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03008
Ribosome biogenesis in eukaryotes
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101525994 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
101525994 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101525994 (XRN2)
03019 Messenger RNA biogenesis [BR:
opi03019
]
101525994 (XRN2)
03009 Ribosome biogenesis [BR:
opi03009
]
101525994 (XRN2)
03016 Transfer RNA biogenesis [BR:
opi03016
]
101525994 (XRN2)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101525994 (XRN2)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
101525994 (XRN2)
Ribosome biogenesis [BR:
opi03009
]
Eukaryotic type
Pre-60S particles
RNases
101525994 (XRN2)
Transfer RNA biogenesis [BR:
opi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
101525994 (XRN2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
101525994
NCBI-ProteinID:
XP_004585703
LinkDB
All DBs
Position
4A:15506519..15576030
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AA seq
950 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKPKECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNNHPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE
FIFLRLNVLREYLERELTMASLPFTFDIERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE
KRKRMKRDQPAFTPSGILTPHALGSRNSPGSQVASNPRQAAYEMRMQNNSSPSVSPNTSF
TSDGSPSPVGGIKRKAEDSDSEPEPEDNVRLWEAGWKQRYYKNKFDVDAADEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWKWYYPFHYAPFASDFEGIADLPSEFEKGTKPFKPLEQLMG
VFPAASGNFLPPSWRKLMSDPDSSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEENRRNSLGGDVLFVGKHHPLHDFILELYQTGSTEPVDVPPELCHGIQG
KFSLDEEAILPDQVVCSPIPLLRDLTQNAAISINFKDPQFAEDYIFKAVMLPGARKPAAV
LKPSDWEKSSNGRQWKPQLGFNRDRRPVHLDQAAFRTLGHVMPRGSGAGVYSNAAPPPAT
YQGNLYRPLLRGQAQIPKLMSNMRPQESWRGPPPLFQQQRFDRGVGAEPLLPWNRMIQNQ
NAAFPPNQYQMLAGPGAYPPRRDDRGGRQGYPREGRKYPLPPPSGRYSWN
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctgagccgcaagtacccgtccatcattgtcaac
tgcgtggaagagaagccaaaagaatgcaatggtgtaaagattccagttgatgccagtaaa
cctaacccaaatgatgtggagtttgataatctgtatttggatatgaatgggatcatccac
ccctgtactcatccagaggacaaaccagcaccaaaaaacgaagatgaaatgatggttgca
atttttgagtacattgacaggcttttcaatattgtaagaccaagaaggcttctctacatg
gctatagatggagtggcaccacgtgctaaaatgaaccagcagcgttcaaggagatttaga
gcatcaaaagaaggaatggaggcagctatcgagaagcagcgagtccgagaggaaatactg
gcgaaaggtggctatcttcctccagaagagatcaaagaaagatttgacagcaactgtatt
acaccaggaactgagttcatggacaatcttgctaaatgccttcgctattacatagcagat
cgcttaaataatcaccctgggtggaaaaatttgacagttattttgtcggatgctagtgct
cctggtgaaggagaacataaaatcatggattacattagaagacaaagagcccagcccaac
catgacccaaatactcatcattgtttatgtggagctgatgctgatctcattatgcttggc
cttgctacacatgaacccaactttaccattattagagaagaattcaagccaaacaaaccc
aaaccgtgtggtctttgtaatcagtttggacacgaggtcaaggattgtgaaggtttgcca
agggaaaagaaaggaaagcatgatgaacttgctgacagtcttccttgtgcagaaggggag
tttatcttcctgcggcttaatgtccttcgtgagtatttggaacgggagcttactatggcc
agcctacccttcacatttgatattgagaggagtatcgatgactgggtcttcatgtgcttc
tttgtgggaaatgactttcttcctcacttgccatcattagagattagggaaggtgcgatt
gatcgtttggttaacatatacaagaatgtggtacacaaaactgggggttaccttacagaa
agtggttatgtcaatctgcaaagagtacagatgatcatgttagcagttggtgaagttgag
gatagcatttttaaaaagagaaaggatgatgaggacagttttagaagacgacagaaagaa
aaaaggaagaggatgaagagagatcaaccagctttcactcctagtggaatattaacccct
catgcattgggttcaagaaattcacccggatctcaagtagccagtaatccgaggcaagca
gcctatgaaatgaggatgcagaataactctagcccttcagtgtctcctaatacaagtttc
acgtctgatggctccccatctccagtaggaggaattaagcggaaagcagaagacagtgac
agtgaacctgagcccgaggataacgtcaggttatgggaagctggttggaaacagcgatac
tataagaacaaatttgatgttgatgcagctgatgagaaattccgccgtaaagttgtgcag
tcttacgttgaaggtctttgctgggttcttcggtattactaccagggctgtgcttcctgg
aagtggtattatccattccattatgccccatttgcttcagacttcgaaggaattgcagac
ctgccttctgagtttgagaagggtacaaaaccgtttaagccactggaacaacttatggga
gttttcccagcagcaagtggtaactttctacctccatcgtggcgaaagctcatgagtgac
cctgattctagtataattgacttttatcccgaagactttgctattgatttgaatggaaag
aaatatgcatggcaaggtgttgctctgttgccattcgtggatgaacgcaggctgcgagcg
gccctggaagaggtgtacccagacctgactccagaagagaacagaagaaacagtcttgga
ggtgatgtcttgtttgtggggaagcatcatccacttcatgacttcattttagagctctat
cagactggttccacagagccagtggatgtaccacctgaactgtgtcatgggattcaaggg
aagttttctttggatgaagaagccattcttccagatcaagtggtgtgttctcctattcct
ctgctacgagacctgacgcagaatgctgcaatcagtattaatttcaaagacccacagttt
gcagaagactacatttttaaagctgtaatgcttccgggagcaagaaagccagctgcagta
ctgaaacccagtgactgggaaaaatccagcaatggacgacagtggaagccgcagcttggc
tttaaccgggaccggcgacctgtgcacctggaccaggcagccttcaggactttgggccat
gtcatgccacgaggttcgggagctggcgtttatagcaatgctgcaccaccacctgccact
tatcagggaaacttgtacaggccactgttgagaggacaagcccagattccaaaacttatg
tcaaatatgaggccgcaggaatcctggcgaggccccccgccccttttccagcagcaaagg
ttcgacagaggagttggggctgagcctctcctgccgtggaaccggatgatccaaaaccaa
aacgcagccttcccaccaaaccagtaccagatgctagctgggcctggcgcgtacccaccc
agacgagatgatcgtggagggagacagggatatcccagagaaggaaggaaataccctttg
ccaccaccctcaggaagatacagttggaattaa
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