Ochotona princeps (American pika): 101526037
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Entry
101526037 CDS
T07609
Symbol
TRIM27
Name
(RefSeq) zinc finger protein RFP
KO
K12009
tripartite motif-containing protein 27 [EC:
2.3.2.27
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101526037 (TRIM27)
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101526037 (TRIM27)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101526037 (TRIM27)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-B_box
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_3
zf-C3HC4_2
zf-RING_2
RING_XB3-XBAT31
zf-Tbcl_FmdE
Baculo_IE-1
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
101526037
NCBI-ProteinID:
XP_004598499
LinkDB
All DBs
Position
12:complement(27054529..27073007)
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AA seq
436 aa
AA seq
DB search
MASASVAECLQQETTCPVCLQYFVEPMMLDCGHNICCACLARCWGTAETNVSCPQCRETF
PQRHMRPNRHLANVTQLVKQLRTERPSGPGGEMGVCEKHREPLKLYCEEDQMPICVVCDR
SREHRGHSVLPLEEAVEGFKEQIQNQLDHLKRVKDLKKRRRAQGEQARAELLDIGDTLSR
AERIRIPEPWITPPDLQEKIHIFAQKCLFLTESLKQFTEKMQSDMEKIQELREAQLYSVD
VTLDPDTAYPSLILSDNLRQVRYSYLQQDLPDNPERFNLFPCVLGSPCFIAGRHYWEVEV
GDKAKWTIGVCEDSVCRKGGVTSAPQNGFWAVSLWYGKEYWALTSPMTALPLRTPLQRVG
IFLDYDAGEVSFYNVTERCHTFTFSHATFCGPVRPYFSLSYSGGKSAAPLIICPMSGIDG
FSGHVGNHGHSMETSP
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgcgagcgtggccgagtgtctgcagcaggagaccacctgccctgtgtgcctg
cagtatttcgtcgagcccatgatgctcgactgcggacacaacatctgttgcgcgtgtctc
gcccgctgctggggcacggctgagaccaacgtgtcgtgtccgcagtgccgggagaccttc
ccgcagcggcacatgcggcccaaccggcacctggccaatgtgacccagctggtgaagcag
ctgcgcaccgagcggccgtcagggcccggcggcgagatgggcgtgtgcgagaagcaccga
gagcccctgaagctgtactgcgaggaggatcagatgcccatctgcgtggtgtgcgaccgc
tcccgcgagcaccgcggccacagcgtgctgccgctggaagaggccgtggagggcttcaag
gaacaaatccagaaccagctggaccatctcaaaagagtcaaagacttgaaaaagaggcgc
cgggcacagggggaacaggcacgagctgaactcttggacatcggggacacactgagcagg
gctgaaagaatcaggatccctgaaccttggatcacacctccagatctgcaagagaaaatc
cacatttttgcccaaaaatgtctgttcttgacagaaagtctgaagcagttcacagaaaaa
atgcagtcagatatggagaaaatccaagaactgagagaggctcagttatactcagtggat
gtgactctggacccggacacagcctaccccagcctgatcctctccgataacctgcggcaa
gtgcgttacagctaccttcagcaggacctgcccgacaacccggaacgattcaacctgttc
ccctgtgtcctgggctctccatgcttcatcgctgggagacattattgggaggtagaagtg
ggagacaaagccaagtggaccataggtgtctgtgaagactcagtatgcagaaaaggtggc
gtgacctcggctccccagaatggcttctgggcagtgtcactgtggtatgggaaagagtac
tgggctctcacttcccccatgactgcccttcccctccggacccccctccagcgggtgggg
attttcttggactatgatgctggggaggtgtccttctacaacgtgacggagaggtgtcac
accttcactttctctcacgctaccttctgtggtcctgtccggccctacttcagtctgagt
tactcgggagggaagagtgcagctcctctgatcatctgccccatgagtgggattgatggc
ttttctggccatgttgggaatcatgggcattctatggagacttctccttga
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integrated database retrieval system
