Ochotona princeps (American pika): 101526150
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Entry
101526150 CDS
T07609
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101526150 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101526150 (EDC4)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101526150 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
101526150 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
101526150
NCBI-ProteinID:
XP_004584018
LinkDB
All DBs
Position
5:36830064..36841650
Genome browser
AA seq
1401 aa
AA seq
DB search
MASCASIDIEDATQHLRDILKLDRPAAGPSPENQRPSSTYNGDLNGLLVPDPLCSGDGTA
ASKSGLRTLPPINLQEKQVICLSGDDSSTCIGILAKEVEIVASSDSSISSKARGSNKVKI
QPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSVA
DLAFAHLNSPQLACLDEAGNLFVWRLALVNGKIQEEILIHIRQPEGTPLNHFRRIIWCPF
IPEESEDCCEESSPTVALLHEDRAEVWDLDMLRSSYSIWPVDVGHIKQGYIVVKGHSTCL
SEGALSPDGTVLATASHDGYVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSSVSVPPSLKVCLDLSAEY
LILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLPA
EEENDSLGADGAHGTGAMESAAGVLIKLFCVHTKALQDVQIRFQPQLNPDVIAPLPTHTP
HEEFAFGESRSELGSEGLGSASHGSQPDLRRIVELPAPADFLSLSSETKPKLMTPDAFMT
PTASLQQIAASPGSSNSSSSSSSSSSSSSLTAVSAMSGTSAVDASLARPPEELTLSPKLQ
LDGSLTVSGSNSLQASPRSLLPGLLQGPADKLTPKGPGQVPTAASALSLELQEAEPLGLP
QASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGSSAPEALEPDSMASAASALHLLS
PRPRPGPELGPQLGLDGGPGDGDRHNTPSLLEAALSQEVVTADSQVWPTAPDITRETCST
LAESPRNGLQEKHKSLAFHRPPYHLLQQRDSQDTSAEQSDHDDEVASLASASGGFGTKVP
PPRLPVKDWKTKGSPRASPKLKRKNKKDDGNLAVGSRLTEHQVAEPPEDWPALIWQQQRE
LAELRHSQEELLQRLCAQLEGLQNTVTGLVERALETRHEQEQRWLERALAEGQQRGGQLQ
EQLTQQLSQALSTAIAGRLERGLRDEIKKTVPPCVSRTLEPVAGQLNNSVATKLTAVEGS
MKENVSKLFKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQINDS
FRLGTQEYLQQLENHMKSRKAREQEAREPVLAQLRGLVGTLQSTTEQMAGTVSTTVRADL
QHELHVAVGSLQESILPQLQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPSAHLD
CHAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPAQVFGQPPCPLSQPVLLS
LIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMTQVRQKLFQFLQAEPHNS
LGKAARRLSLMLHGLVTPSLP
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgcgcgagcatcgacatcgaggacgccacgcagcacctgagggacatcctc
aagctggaccggcccgctgcgggccccagtcctgagaaccagcggccatccagcacctac
aatggggatctcaatgggctcctggtcccagatcctctctgctcaggtgatggtactgca
gcaagcaagtctggtctccgtaccttgccacccattaacctgcaggagaaacaggtcatc
tgcctgtcaggggatgacagctctacctgcattgggattttggccaaagaggtggagatt
gtggccagcagcgactcaagcatttcgagcaaggcacggggaagcaacaaggtgaaaata
cagcctgtcgccaaatatgactgggaacagaagtactactacggcaacctgatcgctgtg
tcgaactcctttttggcctatgccattcgggctgccaacaatggctcagcgatggtgcga
gtgatcagcgtcagcacttcggagcgaactctgctgaaaggattcacaggcagcgtggct
gacctggccttcgcacacctcaactctccacagctggcctgcctagatgaggcaggcaac
ctgtttgtttggcgtttggctttggtcaatggcaagatccaagaagagatcttgatccat
atccggcagccagagggcacgccactgaaccatttccgcaggatcatctggtgccccttc
atccctgaggagagtgaggactgctgtgaggagagcagcccaaccgtggccctgctgcat
gaagaccgggctgaggtgtgggacctggacatgctccgctccagctacagcatctggcct
gtggatgttggccacatcaagcagggctacattgtagtgaaaggccacagcacgtgcctc
agcgaaggtgccctctcccctgatgggactgtcctggctactgcgagccatgatggctat
gtcaagttctggcagatctacattgaggggcaggatgagccaaggtgtttgcatgagtgg
aagcctcatgatgggcggcctctctcctgcctgctgttctgtgacaaccataagaagcag
gaccctgaggtccctttttggaggttcctcattactggcgctgaccagaatcgggagctg
aagatgtggtgcacagtgtcctggacctgcctgcagactatccgcttctccccagacatc
ttcagctcagtgagtgttcccccaagcctcaaggtttgcttggacctttcagcagaatac
ctgattctcagcgatgtgcagcggaaggtcctctatgtgatggagctgctgcagaaccag
gaggagggccgcgcctgcttcagctccatctccgagttcctcctcacccatcccgtgctg
agctttgggatccaggttgtgagccgctgccggttgcgacacactgaggtgctgcctgcc
gaggaggagaatgacagtctgggggctgatggtgcccacggaactggtgccatggagtcc
gcagccggtgtactcatcaagctcttctgtgtgcatactaaggccctacaagatgtgcag
atccgcttccagccacagctgaaccctgatgtgatagccccgctccccacacacactccc
catgaggagtttgcatttggagaatctagatctgaattaggctctgagggcctggggtca
gcctctcatggctcccagcctgacctccgacgcattgtggagctgcctgcacctgctgac
ttccttagtctgagcagtgagaccaagcccaagctgatgacacctgatgcctttatgaca
cccactgcctccctgcagcagattgctgcatcccctggcagtagcaatagcagcagcagc
agtagcagcagcagcagcagcagctctctcacagctgtgtctgccatgagtggcacctca
gctgtggacgcctccttagccaggccacctgaggagctgaccttgagccccaagctgcaa
ctggatggcagcctgacagtgagtggcagcaacagtctgcaggcaagcccacgcagcctc
ctgcctggccttctccaaggcccagctgacaaactgactcccaaagggcctgggcaggta
cctactgctgcctctgcactgtccctggagctgcaggaagcagaacctctgggacttccc
caggcttcccccagccgcacccgctcccctgatgttatctcctcggcttccactgccttg
tctcaggacattcctgagattgcgtctgaggccctgtcccgtggatttggctcctctgcc
cctgaggcccttgagccagacagtatggcctcagctgcctcagcactacacctgctctct
ccacggccccgtccagggcccgagcttggcccccagcttggcctcgatggaggcccaggg
gatggggatcggcacaatactccttctctgctggaggcagccttaagccaggaagttgtg
actgctgacagtcaggtttggcctacagcacctgatattactcgtgagacctgtagcacc
ctggcagagagccccagaaacggcctccaggaaaagcacaagagcctggccttccaccga
ccaccttaccacctgctacagcaacgtgatagccaggacaccagtgctgagcaaagtgat
cacgatgatgaggtggccagcctggcttctgcctcaggaggctttggcaccaaagttccc
cctccacggctccccgtcaaggactggaaaaccaaggggtcccctcgggcctcacctaag
ctcaagcggaaaaacaagaaggatgatgggaatttagctgtggggtcccggcttacagaa
caccaggtggcagagccccctgaggactggccagcactgatttggcaacagcagagagag
ctggcagagctgcggcacagccaggaagagctgctgcagcgcctgtgtgcccagctcgaa
ggcctacagaacacggtcacgggtcttgtagaacgagctctggagactcgacatgagcag
gaacagcggtggctagagcgggccctggcagaggggcagcagcgtggtgggcagctgcag
gagcagttgacccagcagctgtcccaggcactatctacagctattgctgggcggttggag
cgtggccttcgggatgaaatcaagaagacggttcctccatgtgtctccaggactctggag
cctgtggcaggccaactgaacaactcagtggctaccaaactcacagctgtagagggcagc
atgaaagagaatgtctctaagctgttcaagtccaagaacttgacagatgccattgcccga
gcagctgcagacacattacagggcccaatgcaagctgcttaccgtgaagccttccagagt
gtggtgctgcccgcctttgagaagagctgccaggccatgttccagcagatcaatgatagc
ttccggctgggcacacaggaatacttgcagcagctggaaaaccatatgaagagccggaaa
gcacgggaacaggaggctagggagccagtgctggcccagctgcggggcctggttggcaca
cttcaaagcaccactgagcagatggcaggcaccgtgtctaccactgttcgggctgacctg
cagcatgaactgcatgtggctgtgggcagcctgcaggagtcaattttaccacaactacag
cgcatcgtcaagggtgaggtgagcgtggcgctcaaggagcagcaggccgctgtcacctcc
agcatcatgcaggccatgcgctcagctgctggtacacctgtcccctctgcccacctcgac
tgccatgcccagcaagcccatatcctgcagctgctgcagcagggccacctcaatcaggcc
ttccagcaggcgctgacagctgctgacctgaacctggtgctgtatgtgtgtgaaactgtg
gacccagcccaggtatttgggcagccgccctgcccactctcccagcctgtactcctttcg
ctcattcagcagctggcatcagaccttggcactcgaactgaccttaagctcagctacctg
gaagaagctgtaatgcacctggaccacagtgaccccatcactcgagaccacatgggctcc
gttatgacccaggtgcgccagaagctattccagttcctgcaggctgagccacacaattca
cttggcaaagcggctcggcgtctcagcctcatgctgcatggcctggtgacccccagcctt
ccttag
DBGET
integrated database retrieval system
