Ochotona princeps (American pika): 101526263
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Entry
101526263 CDS
T07609
Symbol
NUP188
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03013
Nucleocytoplasmic transport
opi05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101526263 (NUP188)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
101526263 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101526263 (NUP188)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
101526263 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Nup192
TRS130_4HB
DUF4912
Motif
Other DBs
NCBI-GeneID:
101526263
NCBI-ProteinID:
XP_004593750
LinkDB
All DBs
Position
1A:complement(2931889..2989223)
Genome browser
AA seq
1606 aa
AA seq
DB search
MLEVAGSSVQLREMVAPVPSPHPCCCNQIEAELNKHWQRLLEGLSYYKLPSMTERQVSRW
FAQCLREQCMLLEIIFLYYAYFEMSPSDLLVLTKMFKEQGFGSRQINRHLVDETMDPFID
RIGYFSALILVEGMDIESLHKCALDDRRELHQFARDGLTCQDMDHLMLTFGDIPHHAPVL
LAWALLRHTLKPEECSAVVRKLGGTAIQQNVFQYLTRLLRSLASGGNNCTTSTACMCVYG
LLSFVLTSLELHTLGHQQDVIDTACEVLADPSLPELFWGTEPTSGLGIILDSVCGMFPHL
LSPLLQLLRALVSGKSTAKKVYSFLDKMSFYNELYKHKPHDVLSHEDGTLWRRQTPKLLY
PLGGPTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTLFTCEMEMLLHVVSTADVLQHCQ
RVKPIIDLVHRVISTDLSIADCLLPITSRIYMLLQRLTAVISPPVDVIASCVNCLTVLAA
RNPAKVWTDLRHTGFLPFVAQPVSNMSQMISAEGMNAGGYGSLLMNSEQPQGEYGVTMAF
LRLVTTLVKGQLGSTQSQGLVPCVMFVLKEMLPSYHKWRYNSHGVREQIGCLILELIHAI
LNLCHEPELHSSHTPSLQSLCICSLAYTEAGQTVVNIMGIGVDTIDVVMAAQPRSDGAEG
QGQGQLLIKTVKLAFSVTNNVIRLKPPSNVVSPLEQALTQHGAHGNNLIAVLAKYIYHKH
DPALPRLAIQLLKRLATVAPMSVYACLGNDAAAIRDAFLIRLHSKLEDMRIKVMILEFLT
VAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLHSVLELIDTQPQGRYWCPPLLQRA
AVAFLHALWQDRRDSAMLVLRTKPKFWENLTSPLFGTLPPPSETSEPSILETCALIMKIV
CLEIYYVVKGSLDQSLTDTLKRFSGEKRFAYWSGYVKSLAIHTAASEGSSCTSWGEHQLL
VSAWRTLLIIAASHPDVMQLTDSTVRRQLFLDVLDGTKALLLVPTSVNCLRVGSMMCTLL
LILLRQWKRELGPVDNILGPLTEILEGVLQADPRLLERTKAKVFSAFITVLQMKELHVGD
IPQYSQLVLNVCGTLQEEVIALLDQTRHGLAAGSAPEDKDSMETDDGARPPHRDQRDGVC
VLGLHLAKELCEVDQDGDSWLQVTRRLPVLPSLLTTLEVSLRVKQNLHFAEAALHLLLTL
ACTQQGATAVAGAGVTQSICLPLVSVYQLSSNGSAPSTSRKSLDAPSWPXLYRLSMSLME
RLLKTLRYNFLTEALDFVGVHQERTLQCLNAVRTVQSLACLEEADHTVGFILQLSSFMKE
WHFHLPQLMRDIQVNLGYLCQACTSLLHSRKMLQHYLQNKNGDGLPSAVAPRVQRPPTAS
TAAPSCPSSKQPATDPEASEQHALHAVQYGLLKILSRTLAALRHFTPDVCQILLDQSLDL
AEYNFLFALSFTTPTFDSEVAPSFGTLLATVNVTLNMLGELDKKKEPLPQAVGLGTQAEG
TRTLKSLLMFTMENCFYLLISQAMRYLRDPAVHPRDKQRMKQELSSELSTLLSSLSRYFR
RGAPSSPAAGVLPSPQGKSTSASKGSPESQEPLIQLVQAFVRHVQR
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgctggaggttgcagggagcagtgtccagctgcgggagatggtggccccggtcccctcg
ccgcacccctgctgctgtaatcagattgaggcagaactgaataaacattggcagcggttg
ctggaggggctttcttactacaaactacccagcatgactgagcgtcaggtgtctcgctgg
tttgctcagtgccttcgggagcagtgcatgctgctggagatcatcttcctttattacgcc
tactttgagatgtcacccagtgacctgttggtactcaccaagatgtttaaagagcaaggg
tttggtagtcggcaaatcaacaggcatctagtggatgagactatggatccttttatcgat
cggattggctacttcagtgccctgatcctggtggaaggcatggacatcgagtccttgcat
aagtgtgccctggatgacaggagggagctacaccagtttgctcgggacggactgacttgc
caggacatggaccatttgatgttgacctttggggacattccccatcatgccccagtgctt
ttggcctgggctctgctccgtcacaccctgaagccagaagaatgcagtgctgtggtgcgc
aagctgggaggcactgccatccaacagaatgtgttccagtacttgacccgactgctccgc
tcgcttgccagtgggggaaataattgcaccaccagcacagcatgcatgtgtgtctacggg
ctcctgtccttcgtcctgacttcgctggagttgcacaccctgggccatcagcaggatgtg
atcgacacagcctgtgaagtcttggcagacccttctcttccagaactcttctggggaaca
gaacccacctctggccttggcatcatcctggacagcgtgtgtggaatgtttcctcacctc
ctctccccgctcctgcagttactccgagccctcgtgtctggaaagtccactgccaaaaag
gtgtacagtttcttggacaagatgtccttctacaatgaactgtataagcacaaaccccac
gatgtcctctcgcatgaagacggcacgctttggcggcggcagacgcccaaactcctttat
cccctgggtggtcccaccaaccttcgcatccctcagggcaccgtgggccaagtcatgctg
gatgaccgtgcttacctggtacgctgggagtattcatacagcagctggaccctcttcacc
tgtgagatggagatgctgctgcatgttgtgtccactgcagatgtgcttcagcactgccag
cgggtcaagcccatcattgatctggtgcacagggtcatcagcaccgatctctccatagcg
gactgcctcctgcccatcacgtcccgcatctacatgctgctacagcggctaacagcagtg
atctctccgcctgtggatgtcattgcttcttgtgtcaattgtttgactgtcttggcggct
cggaacccagcaaaggtctggactgatcttcgtcacacaggctttttaccttttgtggcc
cagcctgtctccaacatgagtcaaatgattagtgcggagggcatgaatgccggagggtac
gggagcctcctgatgaacagcgagcagccccagggcgagtacggggtcacgatggccttt
ctgcgcttggtcaccactcttgtcaagggccagcttggtagtacccagagtcaaggactc
gtgccctgtgtcatgtttgtgctgaaagagatgcttcccagctaccacaagtggcgctac
aactctcacggtgtgagggagcagatcggttgcctgatcttggagctgattcatgcgatc
ctgaacctgtgccatgagccagagctccacagcagccacacgcccagcctgcagtccctt
tgcatctgcagcttggcctacacagaagcggggcagacagttgtcaacatcatgggcatc
ggcgtggacaccatcgacgtggtgatggctgctcagccccgaagtgatggggcagagggc
caggggcagggccagctgctcatcaagacagtgaagctggccttctccgtcaccaacaac
gtcattcggctgaaacctccttccaacgtggtgtcccccctggagcaggcgctcacgcag
cacggtgcccacggaaacaacctcattgctgttctggcgaagtacatctaccacaaacat
gaccctgcgttgccacgacttgccattcagctcctgaagcgtctggccacggtggcccca
atgtcagtgtacgcatgcttgggcaacgacgcagcagccattcgcgatgccttcctgatc
cgcctgcacagcaagctggaggacatgcgcatcaaagtcatgattctggagttcctcacc
gtcgcggtggagacccagccaggcctcatcgagctgttcctcaacctggaggtgaaggac
ggcagtgacggctccaaggaattcagcctgggcgagtggagctgtctccactctgtgttg
gagctcatcgacacgcagccacaggggcgatactggtgcccgcccctactgcaacgtgcg
gctgttgccttcctgcatgccctgtggcaggaccgtcgggacagtgccatgctggtcctc
agaaccaagcccaagttttgggaaaatttaacaagtccgctgtttggaacccttccccct
ccctcagagacgtcggagcccagcatcctggaaacctgtgccctcatcatgaagatcgtt
tgcttggagatctactatgtcgtgaagggttccttagaccagtcgttaacagacacactt
aaaagattctccggtgagaaacgctttgcctactggtcagggtacgtgaagtccctggcc
atccacacggctgccagcgagggcagcagctgcacctcctggggagagcaccagctgctg
gtgtctgcctggcggaccctgctcatcattgctgccagccacccagatgtcatgcaactg
accgactcaacagtgcgccgtcagctctttcttgatgtgctcgatgggaccaaagcctta
ctcctggttcccacctcggtgaactgcctgcgtgtgggctccatgatgtgcaccctgctg
ctcatcctgctgcggcagtggaagagagagttgggtcccgtggacaacatccttgggccc
ttgacggagatcctggaaggagtgctgcaggcagacccacggctcctggagaggaccaag
gccaaggtgttctcggcattcatcactgtgctgcaaatgaaggagctgcacgttggtgac
atcccccagtactcccagctggtgctgaatgtctgcgggactctgcaggaagaggtgatc
gcactcctggaccagacccgccatggcctggcagcgggcagcgccccggaggacaaggac
agcatggagactgatgatggcgcgaggcccccgcacagagaccagcgtgacggggtgtgt
gttctgggtctgcatctggccaaagagctgtgtgaggtggaccaggatggggactcgtgg
ctgcaggtgacccgcaggctccccgtcctgcccagcctgctcacgaccctggaggtgagc
ctccgagtgaagcagaacctgcattttgcagaggccgccttacacttgctcctcacactg
gcttgcacccagcagggagccacggcagtggctggagctggtgtcacacagagcatctgt
ctgcctctcgtcagtgtgtaccagctcagctccaatggttcggcacccagcacctctcgg
aagtcgctggatgccccctcgtggcccnncctctatcgcctgtccatgtccttgatggag
cggttgcttaagactctgcgctacaacttcctgactgaggcactggacttcgtgggtgtc
caccaggagcgaaccttgcagtgcctcaatgcagtcaggacggtgcagagtctggcctgc
ctggaggaggctgaccacacggtgggcttcatcctgcagctgtccagcttcatgaaggag
tggcacttccacctgccacagctgatgcgcgacatccaggtcaaccttggctacctgtgt
caggcctgcacctcgctgctgcatagccgcaagatgctgcagcattacctgcagaacaaa
aatggggatggccttccctcagcagttgcacctcgagttcagcggccccccactgcctcc
actgccgccccttcctgcccctcctccaagcagcctgccaccgaccctgaagcctcggag
cagcacgccttgcatgcagtccagtacggcctgctcaagatcctcagcaggaccctggca
gccctgcgccacttcacccccgatgtctgccagatcctgctggatcagtcgctggatctt
gctgaatacaacttcctttttgccctgagtttcactactcccacctttgactcggaagtg
gccccctcctttggaacgctcctggccacagtgaacgtgaccctcaacatgctcggggag
ctggacaagaagaaggagcccctgccccaggctgtggggctcggcacacaggcagaaggc
acgaggacattaaagtccctcctgatgttcaccatggagaactgcttctacctgctcatc
tcccaggccatgcgctacctccgggacccggctgtgcaccctcgtgacaaacagcgcatg
aagcaggagctcagctctgagttgagcacactgctctccagcctctcgcgctatttccgc
cgtggagctcccagctctcctgctgctggcgtcctgccctcgccacaaggcaagtccacc
tctgcctctaagggcagccctgagagccaggagccgctcatccagctggtgcaggccttt
gtccggcacgtgcagagatag
DBGET
integrated database retrieval system
