Ochotona princeps (American pika): 101526342
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Entry
101526342 CDS
T07609
Symbol
SMARCA2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03082
ATP-dependent chromatin remodeling
opi04714
Thermogenesis
opi05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101526342 (SMARCA2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101526342 (SMARCA2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101526342 (SMARCA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101526342 (SMARCA2)
03036 Chromosome and associated proteins [BR:
opi03036
]
101526342 (SMARCA2)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101526342 (SMARCA2)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
101526342 (SMARCA2)
Chromatin remodeling factors
BAF complex
101526342 (SMARCA2)
PBAF complex
101526342 (SMARCA2)
GBAF(ncBAF) complex
101526342 (SMARCA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
101526342
NCBI-ProteinID:
XP_004591888
LinkDB
All DBs
Position
1B:complement(12212727..12371264)
Genome browser
AA seq
1590 aa
AA seq
DB search
MSTPTDPGAMPHPGPSPGPGPSPGPILGPSPGPGPSPGSVHSMMGPSPGPPSVSHPMPAL
GSTDFPQEGMHQMHKPIESMHDKGIVDDMHCGSMKGTSMRPPHPGMGPPQSPMDQHSQGY
MSPHPSPMGAPEHVSSPVSGGGPTPPQMPPGQPGSLIQGEPQAMSQPNRGPSPFSPVQLH
QLRAQILAYKMLARGQPLPETLQLAVQGKRTLPGMQQQQQQQQQQQQQQQQQQQPTPPQP
QALLQPASASVQQPHPPQQQQPPPSQSQQPQQPLTCPCHSCPAGPSQDLNSLGTPQKLQA
LSGRPSPAPPAAAQPPAAAVPGPSVQPPAPGQPSPVLQLQQKQSRISPIQKPQGLDPVEI
LQEREYRLQARIAHRIQELENLPGSLPPDLRTKATVELKALRLLNFQRQLRQEVVACMRR
DTTLETALNSKAYKRSKRQTLREARMTEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDF
KEYHRSVAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKK
DRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKKRRRKKKAEENAEGGESALGPDGE
PIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDY
EEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYSMQYSARGSQSYY
TVAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIAL
ITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGK
FNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGT
PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVL
RPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGA
KTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKL
RATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIF
LLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE
KILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEENEEEDEVPDDETLNQM
IARREEEFDLFMRMDMDRRREDARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEK
IFGRGSRQRRDVDYSDALTEKQWLRAIEDGNLEEMEEEVRLKKRKRRRNMDKDPAKEDVE
KAKKRRGRPPAEKLSPNPPKLTRQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKELPEYY
ELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIYEDSIVLQSVFK
SARQKIAKEEESEEDSNEEEEEEDEEESESEAKSVKVKIKLNKKDEKSRDKGKGKKRPNR
GKAKPVVSDFDSEEELDDNEQSEASGTDDE
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgtccacgcccacagaccctggcgccatgccccatccggggccctcaccggggcctgga
ccctcccccggaccaattcttggaccaagtccaggaccaggaccatccccgggttccgtc
cacagcatgatggggccaagtcccggccctccaagcgtctcacacccgatgccagccttg
gggtcaacagacttccctcaagaaggcatgcatcagatgcataagcccatcgagagtatg
cacgacaaagggattgtggacgacatgcactgtggatccatgaaaggcaccagtatgcga
cctccccatccgggcatgggccctccccagagccccatggatcagcacagtcaaggttac
atgtcaccgcacccgtctccaatgggagccccagaacatgtctccagccccgtatccgga
ggaggcccgacaccaccgcagatgccaccgggccagccaggatccctcattcagggagaa
ccgcaggccatgagccagcccaacagaggaccctcgcctttcagccccgtgcagctgcat
cagctgcgagctcagattctagcatacaaaatgctggcccggggccagcccctccccgaa
accctgcagcttgcagtccaggggaaacggacgttgcctggcatgcaacaacagcagcag
cagcagcagcagcagcaacaacaacaacagcagcagcagcaaccaacaccaccgcagcca
caggccctgcttcagccggcgtcggcgtctgtacagcaaccacacccacctcagcaacaa
cagccgccgccatcgcagtcacagcaaccacagcagccgctcacctgcccatgtcactct
tgtcctgcaggcccatcccaggacctgaacagtctgggcaccccacagaagctgcaggcg
ctcagcggccggccctctccggcacctccagcggcagcacagcctccggcggctgctgtg
cccgggccgtcggtgcagcctccagctccggggcagccctcacctgtcctgcagctgcag
cagaagcagagccgcatcagccccatccagaagccacagggtctggaccccgtggagatc
ctgcaggagcgggaatacaggcttcaggcccgcatagctcacaggatacaagaactggaa
aatctgcctggctctctgccaccagatttacgaaccaaagctaccgtggaattgaaagca
cttcggctactcaatttccagcgtcagctgcgacaggaggtggtggcctgcatgcgcagg
gacacgaccctcgagacggccctcaactccaaagcgtacaagcggagcaagcggcagacg
ctgagagaggctcgcatgaccgagaaactggaaaaacagcagaagatcgagcaggagagg
aagcgccggcagaaacaccaggaatacctgaacagcattttgcaacatgcgaaagacttt
aaggaataccaccgctccgtggctggcaagatccagaagctgtccaaagcagtggcgaca
tggcatgccaacacggaaagggaacagaagaaggagacggagcgcatcgagaaggagaga
atgcggagactgatggctgaagatgaagaagggtatagaaagctgattgaccagaagaag
gaccgacgcttggcttacctcctgcagcagaccgatgagtacgtggccaatctgaccaac
ctggtgtgggagcacaagcaagctcaagcagccaaagaaaagaagaagaagaggaggagg
aagaagaaagctgaagagaatgcagagggaggtgaatcggccctaggaccagacggagag
ccgatagatgagagcagtcagatgagcgacctccctgttaaagtgacacacacggaaacc
ggcaaggtcctgtttggaccagaagcacccaaagcaagtcagctggatgcctggttggaa
atgaatcctggctacgaggtggccccaagatcggacagtgaagagagtgattccgattac
gaggaggaggatgaggaagaagagtccagcagacaggaaacggaagagaaaattcttctg
gaccccaacagtgaggaagtctccgagaaggatgccaaacagattattgagaccgcgaag
caagacgtggatgatgaatacagcatgcagtacagcgcccgaggatcccagtcgtactac
actgtggctcacgccatctcggagagggtggagaagcagtcggctctgctcattaacgga
accctaaagcattaccagctgcagggcctggaatggatggtctccctgtataataacaat
ctgaacggaatcttagctgatgaaatggggctaggaaagaccatacagaccattgcactc
atcacgtatctgatggagcacaaacgactcaatggcccctatctcatcatcgttcctctc
tcgactctatctaactggacatatgaatttgacaaatgggctccttctgtggtgaaaatt
tcttacaagggcacccctgccatgcgtcgctctcttgtgccccagctgcggagtggcaaa
ttcaatgtcctcctgactacttatgagtacattatcaaagacaagcacattcttgccaag
attcggtggaagtatatgatcgtggacgaaggccaccgaatgaagaaccaccactgcaag
ctgacccaggtcttgaacacgcactacgtggcccccagaaggatcctgttgaccggcacc
cccctacagaacaagctccccgaactctgggccctcctcaacttcctcctccccacgatt
tttaagagttgcagcaccttcgaacaatggtttaatgctccgtttgccatgacgggtgaa
agggtggacctgaatgaagaggagaccatcttgatcattagacgtctacataaggtgctg
aggccgttcctactgaggagactcaagaaagaagtggaatcccagcttccagaaaaagtg
gagtacgtgatcaaatgtgacatgtcggccctgcagaagatcctctaccgacacatgcaa
gccaaggggatcctcctcacagacggctctgagaaagataagaaggggaagggaggagcc
aagactctgatgaacaccattatgcagctgagaaagatctgcaatcacccgtacatgttt
cagcatattgaggaatcctttgctgaacacctgggctactccaacggagtcataaacggg
gccgagctctaccgggcctcaggcaagtttgagctcctcgatcgcatcctgcccaaactg
cgagcgaccaatcaccgggtgctgctcttctgccagatgacctcgctcatgaccatcatg
gaggactatttcgccttccgcaacttcctttacctgcgcctggatggcactaccaagtct
gaagatcgtgccgcgctgctgaagaaattcaatgagcctgggtcccagtatttcatcttc
ttgctgagcacccgtgcaggaggcttgggtttaaacctgcaggcagctgacacagtggtc
atcttcgacagtgactggaaccctcaccaggacctgcaggcacaggaccgggcccaccgc
attggccagcagaacgaggtccgggtgctgcgactgtgtaccgtcaacagcgtggaagag
aagatcctggcggcggccaagtacaagctcaatgtcgaccagaaggttattcaggcgggc
atgttcgatcagaagtcctccagccacgagcgcagggccttcctgcaggccatcctggag
cacgaagaggagaacgaggaggaagatgaagtgccagacgatgagactctgaaccagatg
atcgcccggcgagaggaggaattcgacctttttatgcgtatggacatggaccgccggagg
gaagacgctcggaaccccaaacgcaaaccccgcttaatggaggaagacgagctgccctcc
tggattataaaggacgatgctgaagtggaaaggctcacgtgtgaagaggaagaggagaag
atattcggcaggggctcccgccagcgccgcgacgtggactacagtgatgccctcacagag
aagcagtggctcagggccattgaagacggcaatttggaagaaatggaagaggaagtgcgg
ctgaaaaagagaaagaggcgaagaaacatggacaaagaccccgccaaggaagatgtggaa
aaggcgaaaaagagacggggccgccccccagcggagaagctctcgcccaaccccccgaaa
ctgaccagacagatgaacgccatcattgacactgtcatcaactacaaggacagctccggt
cggcagctcagcgaagtcttcattcaattaccttcaaggaaagaattgccagaatactat
gaattaattcggaaaccagtggacttcaaaaaaatcaaggaaagaatccgtaaccataaa
taccggagcctgggcgacctggagaaagatgtcatgctgctgtgtcacaacgctcagaca
ttcaacctggagggctctcagatctacgaggactccatcgtcttacagtccgtgttcaag
agcgctcggcagaaaatcgccaaagaggaggagagcgaggaggacagcaatgaggaggag
gaagaggaggatgaggaagagtctgagtcagaagcgaaatcggtgaaggtgaaaatcaag
ctcaacaagaaagatgagaaaagccgagacaaaggaaaagggaagaaaaggccaaatcga
ggcaaagccaaaccggtcgtgagcgactttgacagcgaagaggagctggatgacaatgaa
cagtcggaagcgagtgggaccgatgatgaatga
DBGET
integrated database retrieval system
