Ochotona princeps (American pika): 101526374
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Entry
101526374 CDS
T07609
Symbol
DHX58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
101526374 (DHX58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
opi04054
]
101526374 (DHX58)
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101526374 (DHX58)
Pattern recognition receptors [BR:
opi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
101526374 (DHX58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
101526374
NCBI-ProteinID:
XP_004599160
LinkDB
All DBs
Position
19:complement(5597259..5603411)
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AA seq
678 aa
AA seq
DB search
MELRPYQWEVIMPALEGKNIIVWLPTGTGKTRAAAYVAKRHLETVTGAKVVVLVNRVHLV
TQHSEEFSRMLDGRWAMTTLRGDMGPRASFGHLARCHDLIICTAELLQLALASTEEEEHV
ELTAFTLLVVDECHHTHKDTVYNVILSRYLELKLQRVQPLPQVLGLTASPGTGGASKLQG
AIDHILKLCANLDTWRIMSPECYQSQLQQHVQQPRKRYDLCHRRSQDPFGDLLKKLMDRV
HDQMDMPKLSRDFGTQNYEQQVVELSQTAVEAGQQEWRVYALHLRRYNDALLIHDTVRAV
DALEALRDFYNRERATKAQILHAERWLLALFNEYKDELDCLATQGPENPKLEKLKSILQE
QFRGPKNPRGIIFTRTRQSARSLLLWLQQQPDLQMVDIKAQQLIGAGSGSQSSHMTQRDQ
EDVIRRFRAGTLNLLVATSVAEEGLDILQCSIVVRYGLLTNEISMVQARGRARAGQSVYS
FVATKDSQELRRELTNEMLEELMKQAVAAVQKMDPAEYEAKIRDLQLAALIHRAARADQK
KQARNQFTAEQVRLRCINCMEAVGHGSDLRKVEGAHHVNVNPNFSIYYTVSRDPVVMDRE
FRDWKPGGVISCRNCGEPWGLQIIYKSQNLPVLKVRSMLLETPQGRIQAKQWSRVPFPVP
EFDLVQHCGLSLEDLLLD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcgtccttatcaatgggaagtgatcatgcctgccttggaaggcaagaatatc
attgtgtggctgcccacgggcaccggaaagacccgggcggctgcctatgtggccaagagg
cacctggagacggtgactggagccaaggtggtggtcctggtcaacagggtgcacctggtg
acccagcacagcgaggagttcagccgcatgttggatggacgctgggccatgaccaccctg
aggggggacatgggaccgcgggccagcttcgggcacctggcccggtgccacgacctcatc
atctgcacagctgagttgctgcagctggcgttggcaagcacggaggaggaggagcatgtg
gaactcacagccttcacactgctcgtggtggacgagtgtcaccacacgcacaaggacacc
gtctataatgtcatcctgagtcgctacctggagcttaagctgcagagggtgcaacctctg
ccacaggtgctgggactcacagcctcccctggcactggtggggcctccaagctccaggga
gccatcgaccacatcctaaagctctgtgccaacttggacacctggcgcatcatgtcacca
gagtgctaccagtcccagctgcagcagcacgtccagcagccccgcaagcgatatgacctc
tgccaccgtcgcagccaggacccatttggggacttgctgaagaagctcatggaccgagtg
catgaccagatggatatgcccaagctgagccgggactttggcacacagaactacgagcag
caggtggtggagctgagtcagactgcggttgaggctgggcagcaggagtggcgggtatat
gcacttcacctgaggcgctacaacgatgcgttgctcatccacgacacggtgcgcgccgtg
gatgccctggaagccctgcgagatttctacaacagggagcgtgccactaaggctcagatc
ctgcacgccgagcgctggctgctggcactgttcaatgaatataaggatgagttggactgt
ctggcaacacaaggccctgagaaccccaagctggagaagctgaaaagcatcctgcaggag
cagttcagaggccctaagaacccccggggcatcatcttcacccgcacccgccaaagtgcc
cgctccctgctgctctggctccagcagcagcctgacctgcagatggtcgacatcaaagcc
cagcagctgattggggcgggcagcggcagtcagagctcacacatgacccagagggaccag
gaagacgtgattcggaggttccgggctggcacgctgaacctgctggtggccacaagcgtg
gccgaggaggggctggacatcctgcagtgcagcatagtggtgcgctatgggctgctcacc
aacgagatctccatggtacaggccaggggccgggcccgtgcgggtcagagcgtgtactca
tttgtggcgaccaaggacagccaggagctacggagggaactgaccaacgagatgttggag
gagctgatgaagcaggcagtggctgctgtgcagaagatggacccagcagagtatgaggcc
aagatccgagatctgcagcttgcagccctaatccaccgggcagcccgggctgaccagaag
aagcaagcacggaaccagttcactgcggagcaggtgcggctacggtgcatcaactgcatg
gaggctgtgggccacgggagtgacctgcggaaggtggagggtgcccaccatgtcaacgtg
aaccccaacttctcgatctactatactgtctcccgggaccccgtggtcatggacagagag
ttccgggactggaagcctgggggtgtcattagctgcaggaactgtggggagccctggggt
ctgcagataatctacaagtcccagaacctgccggtgctcaaagtccgcagcatgctgctc
gagactccccaagggcgaatccaggccaagcagtggtcccgcgttcctttcccggtgcca
gagtttgacttagtacagcattgcggcctgagcttggaggatctcctcctggactga
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