Ochotona princeps (American pika): 101526515
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Entry
101526515 CDS
T07609
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101526515 (RC3H1)
04121 Ubiquitin system [BR:
opi04121
]
101526515 (RC3H1)
Transcription factors [BR:
opi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101526515 (RC3H1)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101526515 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
PaaA_PaaC
Baculo_IE-1
Vesi_VP2
zf-RING_4
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
101526515
NCBI-ProteinID:
XP_004596337
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Position
13A:complement(8150928..8213323)
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AA seq
1131 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPVTLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQAPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLAPRRPLSASLGQLNEVGLPSAAILPDE
TAVELPDRKPPALPNGIVSAGGSATQLIPRGTDPSYDAGLKPGKLDHLSSSAPGSPPDLL
ESVPKSVSALPVNPHSVPPRGPDLPPVPVAKPLQMVPRGSQLYPAQQADVYYQDPRGAAP
TFEPAPYQQGVYYTAPPPCVSRFVRPAPSAPEPGPPCLDHYPAYLQDRVVSSQYGTQPQQ
YPPVYPPHYDGRRVYPAQSYTREEIFRESPIPIEVPPAPVPSYVPESRERYQQMEGYYPV
APHPSQIRAPYPREPPYSRLPPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPT
LPPAFHQEEFLDEDLKAAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDAVAAGSMEMM
NMEGKGVRDPRLDPQRRAAEASDDDLIPFGDRPTVSRFGAISRTSKTIYQGAGPMQAMVP
AGAPTKSLGISDYSPYGSHAAWGGSPYSPHQNMPSQGHFGERERIPMSEVGGHGKPLPCA
DREQLRLELQQLNHQISQQSQLRGLEAVSNRLLLQREASTLAGQPQPPPPPPKWPGMISS
EQLSLELHHVEREIGKRTRELSMENQCSLDMKSKLNASKQTENGQAEPQAKGPAEDLTLT
FSDVPNGSALTQENASLLSSKTSSLKLSEDPEAGGDNSGCQRPGMPPSAAP
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagccccacaatggacggatttcctctcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccacactgtgtgcaagatg
tgcctgaataaactccaccgcaaggcttgtccatttgaccagaccactatcaacacagac
attgagctgctccctgtgaactcggcgctgctgcagcttgtgggtgctcaggtccctgaa
caacagcccgttactttgtgtagtggggttgaagatacaaagcattatgaagaagccaag
aaatgtgtggaagagttagcattgtacctgaaaccactcagcagtgctagaggagtaggt
ttgaacagcactactcagagtgtcctgagccgcccgatgcagaggaagctggtgacactg
gtgcactgccagctcgtggaagaggagggccggatccgggccatgagggcagcgcgctct
ctgggggagcgcacggtcacggagctcatcctgcagcaccagaaccctcagcagctctct
tccaatctctgggcagcagtgagggccagaggttgccagttcctcgggccagcaatgcag
gaagaagctctaaaactggttctgctggccttggaagatggttctgccttgtcgaggaaa
gtgttggttctctttgtggtgcagaggttggagccccggtttcctcaagcatcgaaaact
agcatcggacatgtcgttcagctcctttacagggcctcctgcttcaaggtcacaaaacgt
gatgaagattcttccttgatgcaactgaaagaagaatttagaacttacgaagctcttcgt
cgagaacacgactcccagatagtacagattgctatggaagcaggtttacgaattgcacca
gaccagtggtcctctttgctgtatggagaccagtctcacaaatctcacatgcagtccatt
attgacaagttgcagaccccagcctcttttgcacagagtgttcaggaactgacaattgct
ctgcagcggactggagacccagcaaacctgaaccggctgagaccccatttggagctgctg
gcgaacattgaccctagtccagatgctcctcctccaacttgggaacaactagaaaatggg
ctggtcgctgtacgtacagtggtacacgggctggtggattatattcagaaccacagcaag
aaaggggcagatcagcagcaggctccacagcatagcaaatataaaacctacatgtgtcgc
gacatgaagcagagaggaggatgccctcgtggcgccagctgcaccttcgcgcactcccag
gaggagctggaaaaatttcggaagatgaacaagcgtctggctccgcggaggccactgagt
gcctccctgggtcagctgaatgaggtgggcctgccttcagcagctatccttccggatgaa
actgcagtggagctgcccgacaggaaaccacctgctctgccaaatggaatcgtctcggca
ggcggttctgcaacacagctgattcctcgcgggacagaccccagctacgacgccggcctc
aagccgggcaagctggatcatctgagcagcagcgctcccgggtcccctcccgacctgtta
gagtctgtccctaagagtgtttctgccttgcctgtgaatccacattccgtaccaccaagg
ggaccagacctgcctcctgtgcctgtcgccaaaccgctgcagatggtcccgcgcggctct
cagctgtacccagcccagcaggcagatgtatactatcaggatcctcgaggggctgcgccg
acgtttgaaccagcgccttaccagcagggagtgtactacactgcaccaccaccgtgtgtg
tcccgctttgtccgccctgcaccgtccgctccggagcccggccctccctgcttggaccac
tatccagcctaccttcaggatcgcgtcgtgagctctcagtatggcacacagccacagcag
tacccgcccgtgtacccacctcattatgatggccgtcgcgtataccctgctcagtcttat
acaagagaagaaattttccgggaaagccctattcccattgaggttcctcctgcaccagtg
ccatcctatgtgccagaatccagagagagataccagcagatggagggttactatccagtg
gctcctcatccctctcagatcagagctccgtaccccagagagcctccttatagccgactt
cctccccctccccagccccatcccagtctggatgagctgcatcgccgccggaaggaaatc
atggcccagctcgaagaaagaaaggtcatctccccacctccttttgctccttcaccaaca
ttgcctcctgcctttcatcaagaggaatttctggatgaagacttgaaggcggctgggaaa
tataaaggaaacgactacagccagtattctccctggtcatgtgataccatcggctcctac
atcggaaccaaagacgcaaaacccaaagatgctgtggcagcaggaagcatggaaatgatg
aacatggagggcaaaggcgtgcgagacccacggttagacccgcagcggagggcagccgag
gccagtgacgacgacctgattccgtttggagaccggccaacagtctctcggtttggtgcc
atctctcggacttctaaaacaatttatcagggtgctggcccgatgcaggctatggtgcct
gcaggagctcccaccaaatctcttggcatttcagattacagtccgtacggaagtcacgct
gcctggggaggttctccatattcacctcatcaaaacatgccttctcagggacacttcggt
gagagggaaagaatacccatgtcagaagtgggcggccacggaaagcctctgccgtgtgcg
gacagagagcagctgcgcctggagctgcagcagctgaaccaccagatcagccagcagagc
cagctgcggggactagaggctgttagtaacaggctactgttgcagagggaggccagtacc
ctggcaggccagccacagcccccgccaccacctcccaaatggcctggaatgatctccagt
gagcagctgagcttggagctccaccacgtggaaagggagatcgggaagagaacccgcgag
ctgagcatggagaaccagtgttctctggacatgaaaagcaaattgaatgccagcaagcaa
acagaaaatgggcaagcagagccgcaagccaagggtccggcggaggaccttacgttgaca
ttcagtgatgtcccaaatggatcagccttgacgcaagagaatgccagcctcctgtcaagc
aagaccagctctctgaagctgtcagaggaccccgaggcaggaggggacaacagtggctgc
cagaggccgggcatgccgcccagtgctgctccgtag
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