Ochotona princeps (American pika): 101526963
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Entry
101526963 CDS
T07609
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101526963 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101526963 (CNOT1)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101526963 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101526963 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
101526963
NCBI-ProteinID:
XP_004584197
LinkDB
All DBs
Position
5:complement(29756794..29830739)
Genome browser
AA seq
2197 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKSLKPAPHLFAQLSKVLK
LSKVQEVIFGLALLNSSSSDLRGFAAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEV
LHLLLSHLLFGQKGAFGVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGGVAKTMMESSLADFMQEVGYGFCARKSLDLIESLLRLAEVGQYEQVKQLFSFPIKH
CPDMLVLALLQINTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQACA
GSVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMAS
LSIGGSAAPHTQSMQGFPPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVG
GLGTGSLTGIGSGALGLPAVNNDPFVQRKLGTSGLNQPTFQQSKMKPSDLSQVWPEANQH
FSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEY
RFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALD
RFKNRLKDYPQYCQHLASISHFMQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQ
AQAQAQVPAKAPLAGQVSTMVTTSTTTTVAKTVTVTRPTGVSFKKDVPPSINTTNIDTLL
VATDQTERIVEPPENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRV
SIEPNFHSLYSNFLDTLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWL
GMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWT
MAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAP
KKDVKQPEELPPITSTTTSTTPATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPT
IPLFQAHPQLKQCVRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRI
AAHHMMRNLTAGMAMITCREPLLMSISTNLKNSFASALRTASPQQREMMDQAAAQLAQDN
CELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRL
KVGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITEL
EQHLHAIPPALAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADAD
LLLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNM
QQYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHVTEADLFHTIETLMRINAHSR
GNAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREW
VNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQH
NPAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHD
VRQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWL
ELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVL
LVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEIN
IAPRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALV
LYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNS
HTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWN
HEFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6594 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattgcgctgcctattttcgcatgtggattttagtggcgat
ggtaaaagtagtggcaaagatttccatcagactcaatttctgatccaggagtgtgcgtcg
ctgattacaaaaccaaactttatctcgacgctgtcctatgccattgataatcctttgcac
tatcagaagagtttaaagcctgcaccccacttatttgcccagctgagtaaagttctcaag
ttaagcaaagtacaagaagtaatttttggccttgccctgttgaattcttccagttcagat
ctcagaggttttgctgcccagtttatcaaacagaagcttccagatcttttgcgttcttat
attgacgcagacgtcagtggaaatcaagaaggtggcttccaagatatagcaatagaggtt
ctacacctcctcctctcccatctcctttttgggcagaagggagcctttggagttggacag
gaacaaatagacgcatttcttaagacactgcgcagagattttcctcaagaacgctgtcct
gtggtgcttgcaccactcttataccctgaaaaacgggacattctaatggacaggatcctg
cctgattctggaggggtagctaaaaccatgatggagagctccttggctgatttcatgcaa
gaagtgggctatggcttttgtgcaaggaagagcttggatttgattgaatctctgctgagg
cttgcggaagttgggcagtatgagcaagtcaaacagcttttcagcttccctatcaaacac
tgtccagacatgttggtattggccttactacaaatcaacacctcttggcacaccttacgc
catgagctgatctccaccttgatgccaattttccttgggaatcatcctaactctgctatt
attttgcactacgcgtggcatgggcagggacagtctccctcaattcgccaacttatcatg
catgcaatggcagaatggtacatgagaggggaacaatatgaccaggccaaattgtctcga
atacttgatgtggcccaggacttgaaggccttgtcaatgctgctaaatggtactccattt
gcttttgttattgaccttgctgcacttgcttcacggcgtgaatacctcaaacttgacaag
tggctcacagacaaaattcgagagcatggggagccattcatccaagcttgtatgactttt
ctaaagagacggtgcccctctattttgggtggactagccccagagaaagatcagcccaaa
agtgcccaactccctcctgaaactctggcaactatgttggcttgcttacaagcttgtgca
gggagtgtttctcaggagttatcagaaaccatcctgaccatggtagccaattgcagtaat
gttatgaataaggccagacagccaccacctggagttatgccaaaaggacgcccacccagt
gctagcagcttagatgccatttctcctgttcagattgaccctcttgctggaatggcatct
cttagtataggtggttcagctgcccctcacacccagagcatgcagggtttccctccaaat
ttgggttctgccttcagtacccctcagtcaccagcaaaagcgtttccacccctttcaacc
ccaaatcagacaactgcattcagtggtattggaggactttcgtcacaacttccagtaggt
ggtcttggcacaggcagcctgaccggtataggatctggggctcttggacttcctgcagtg
aataatgatccttttgtacaaaggaaactgggcacctctggattgaatcagcctacattc
cagcagagtaagatgaaaccttcggacttgtctcaggtatggcctgaggcaaatcagcac
tttagtaaagagatagatgatgaagcaaacagctacttccagcgaatatataatcatcca
ccacatccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagactcc
actataaagagggaacgagaagtatttaactgtatgctaaggaacttgtttgaagaatac
cgtttttttccccagtaccctgataaagagttacatataacagcctgcctgtttggtggg
attattgaaaaaggactggtcacttacatggcactaggtcttgctctacgatatgttctt
gaagccttacgcaagccatttggatctaaaatgtattattttgggattgctgcactagat
aggtttaaaaacagattgaaggactatccccagtattgtcagcatttggcctctattagt
cactttatgcagtttcctcatcatttacaggagtacatcgagtatggacagcagtccaga
gatcctcctgtgaagatgcagggctctatcacaacccctggaagtattgcactggcccag
gcccaggcccaggcccaggttccagcaaaagctcctcttgctggtcaggttagcactatg
gtaaccacttcgacaaccaccactgttgctaaaacggttacagtcaccaggccaactgga
gtcagctttaagaaagatgtgccaccttctatcaatactacaaatatagatactttactt
gtggccacagatcaaacagaaagaattgtagagcctccagaaaatattcaagagaaaatt
gctttcattttcaataatctctcccagtcaaatatgacacaaaaggttgaagaattaaaa
gaaactgtgaaggaagaatttatgccttgggtttcacaatatctggttatgaagagagtt
agtattgagccaaactttcatagtttgtattcaaactttcttgatacattgaagaatcct
gaatttaacaagatggttttgaatgagacatacagaaatatcaaagtgctcctgacttca
gataaagctgctgccaatttttcagatcgttctttgttgaagaacttgggacattggtta
ggaatgatcacattggctaaaaataagcccatcttacacactgatttggatgtgaaatct
ttgctgctagaagcttatgttaaaggacagcaggagttgctttatgttgtgccgtttgtt
gccaaagtcttagagtccagcattcgtagtgtggtttttaggcccccaaatccctggaca
atggcaatcatgaatgttttagctgagttacatcaggaacatgacttgaagttaaacttg
aagtttgagattgaggtcctctgcaagaaccttgcattagatattaatgagctaaaacct
ggaaacctcctaaaggacaaagatcgcctaaagaacttagatgagcaactctctgctcca
aaaaaggatgtgaagcagccagaagaactccctcccattacaagtacaacaacatctact
acaccagctaccagcaccacctgcacagccacagtcccaccgcagccacagtacagctac
catgacatcaacgtgtattcgctcgcaggcttggcaccacacattactcttaatccaaca
attcccttgtttcaggcacatccacagttgaaacagtgtgtgcgtcaagcaattgaacgt
gctgtccaggagctggtccatcctgtagtggatcgatcgatcaagattgccatgactact
tgtgagcaaatagtcaggaaggactttgccctggattctgaggaatcgcgaatgcgaata
gcagctcatcatatgatgcgtaacttgacagctggaatggctatgattacctgcagggaa
cctttgcttatgagcatttctaccaacctgaaaaacagctttgcttcagcccttcgtact
gcatctccccagcaaagggaaatgatggatcaggcagctgctcagttagctcaggataat
tgtgaattagcttgttgctttattcagaagacagcagttgaaaaagcaggtcctgagatg
gacaagagattagcaactgagtttgagctgagaaaacatgctaggcaagaagggcgcaga
tactgtgatcctgttgtgttaacatatcaagctgagcggatgccagagcaaatcaggcta
aaagttggtggtgtggatccaaagcagctggctgtttatgaagaatttgcacgcaatgtg
cctggcttcttgcctaccaatgacttaagtcaaccaacaggatttttagctcagcctatg
aagcaagcttgggccacagatgatgttgctcagatttatgataagtgcattacagagttg
gagcagcacctgcatgccattccaccagctttggccatgaatcctcaagctcaagctctt
cgaagtcttttggaggttgttgtgttgtctcgaaattctcgggatgcaatagctgctctt
ggattgctgcaaaaggctgtcgagggtttactagatgccacaagtggtgctgatgctgac
ctgctgctgcgctacagggagtgccacctcttggtcctgaaagctctgcaggatggccgg
gcttatgggtctccctggtgcaacaaacaaatcacaaggtgcctaattgaatgtcgggat
gaatataaatataatgtggaggctgtggaattgttaattcgcaatcatttggttaatatg
cagcagtatgatcttcacctagctcagtcaatggagaatggtttaaactacatggctgtg
gcatttgctatgcagctggtaaaaattctgcttgtggatgaaagaagcgttgcccatgtt
acggaggcagatctgttccacacgatcgaaactctcatgaggattaatgcgcattccaga
ggcaatgctccagaaggattgcctcagctgatggaagtagtgcgatccaactatgaagca
atgattgatcgtgctcatggaggccctaactttatgatgcattctggaatttctcaagcc
tcagagtacgatgaccctccaggcctgagggagaaggcagagtatcttctgcgggaatgg
gtgaatctctaccattcagcagcagctggccgtgacagtaccaaagctttctctgcgttt
gttggacagatgcatcagcaaggaatactgaagacagatgacctcataacaaggttcttt
cgtctgtgcacggaaatgtgtgttgaaattagctatcgtgcccaggctgagcagcagcac
aacccagctgctaatcccacaatgatccgagccaagtgctatcacaacctggatgccttt
gtccgactcattgcgctgctcgtgaagcactcaggggaggccaccaacactgttaccaag
attaatctgttgaacaaggtccttggtatagtagtgggtgttcttttacaagatcatgat
gttcggcaaagtgaatttcagcagcttccctaccatcgaatttttatcatgctactgctg
gaactcaatgcaccagaacatgtgttagaaaccattaatttccagacacttacagctttt
tgcaatacattccacatcttgaggcctaccaaagctcctgggtttgtctatgcctggctt
gaattgatctcccatcgaatttttattgcaagaatgttggctcatacaccacagcagaag
ggatggcctatgtatgcacagctactgattgatttattcaaatatttagcgccttttctt
agaaatgtggaactcaccaaacctatgcaaatcctgtataagggtactttaagagtgctg
ctggttcttttgcatgacttcccagagttcctttgtgattaccattatgggttctgtgat
gtgatcccgcctaactgcatccagttgagaaatctgatattgagtgccttccccagaaac
atgaggctcccagacccattcactcctaatctgaaggtggacatgttgagtgaaattaac
attgctccccggattctcaccaacttcactggagtgatgccacctcaattcaaaaaggat
ttggattcctatcttaaaactcgctcaccagtcacttttctgtcggatttgcgcagcaac
ttacaggtatctaacgagcctggcaatcgctacaatctgcagctcatcaatgcactggtg
ctctacgtagggactcaggccattgcacacatccacaacaagggcagtacaccttcaatg
agcaccatcacccactcagcacacatggacatcttccagaacttggccgtggacttggac
actgaaggtcggtatctcttcctgaatgcaattgcgaaccagctgcgatacccaaatagc
cacactcactacttcagctgcaccatgctgtacctttttgcagaggccaacaccgaagca
atccaggaacagatcacaagggttcttttggaacggttgattgtaaataggccacatcct
tggggtcttcttattaccttcattgaactgattaaaaacccagcatttaagttctggaac
catgaatttgtacactgtgccccagaaattgaaaagttattccagtcggttgcacagtgc
tgcatgggacagaagcaggctcagcaggtaatggaagggacaggtgccagttag
DBGET
integrated database retrieval system
