Ochotona princeps (American pika): 101527267
Help
Entry
101527267 CDS
T07609
Symbol
PCDH20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
101527267 (PCDH20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
opi01009
]
101527267 (PCDH20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
opi04515
]
101527267 (PCDH20)
Protein phosphatases and associated proteins [BR:
opi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101527267 (PCDH20)
Cell adhesion molecules [BR:
opi04515
]
Cadherins
Protocadherins
101527267 (PCDH20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
101527267
NCBI-ProteinID:
XP_004577493
LinkDB
All DBs
Position
8:complement(36838063..36842686)
Genome browser
AA seq
952 aa
AA seq
DB search
MRGRGNAPSLRTLAVSWRPATWHLRLDMGRLHRPRSSADHRNLPHLFLFLLFVGPFNCLA
SYSRATELLYSLNEGLPAGVLIGSLAEDLRLVPRAAGRQDQRSQQSDRTRAEWNPPLSFS
LASGELSGQYVTLDNRSGELHTSAQEIDREALCLEGGGEAAWGGSVSIFSSPSSDSCLLL
LDVLVLPQEYFRFVKVKIAIRDINDNAPQFPVSQISVWVPENAPVNTRLAIEHPAVDPDI
GMNGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGSLDRETQDHYVSIIIAEDGGSPP
LTGSATLTIGISDVNDNCPLFMDSQINVTIYGNATVGTPIAAVQAVDRDLGTNAQITYSY
SQKVPQASKDLFHLDETTGVIKLFSKIGGGVLQTHKLTILANGPGCIPAVITALVSIIKV
TLRPPEIVPRYIANEIDGVVYLKELEPIHTPVAFFTIRDPEGKQKVNCYLDGEGPFRLSP
YKPYNNEYLLETTKPMDYELQRFYEIAVVAWNSEGFHAKRIIKVQLLDDNDNAPVFLQPL
IELTIEENNPPNAFLTKLYATDADSGERGQVLYFLGPDAPSYFSLDNVTGILTVSTQLDR
EEKEKYRYTVRAVDCGKPPKESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIG
VISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGE
PALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAV
IAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKVESVSCVPTLVALSVISLG
SITLVTGMGIYICLRKEKKPHREDDNLEVQIPLKGKIDLHMRERKPMDISNI
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggccgagggaatgctcccagcctgcgaaccctggcagtgagctggcgcccggcg
acctggcaccttcgcctggatatggggcgtctacaccgtcccagaagcagcgccgaccac
aggaatttgccgcatctatttctgtttctcctcttcgtcggacccttcaattgccttgcg
agttacagtcgcgccacggagcttctgtacagcctgaacgagggactgcctgccggagtg
ctcatcggcagcctggctgaggacctgcggctggtgccccgggctgcaggcagacaggat
cagcgttcccaacagtctgatcgcaccagagctgagtggaatccgccgctctctttcagc
ctggcctctggagaactgagcggccagtatgtgactctagacaaccgctcaggggagctg
cacacttctgcccaagagatcgacagggaggccctgtgtcttgaaggaggtggagaggct
gcctggggtggcagcgtttccatcttttcctctccttcttctgattcctgccttttactt
ctggatgtgctggtcctgcctcaggaatactttaggtttgtgaaagtgaaaatcgctatc
agggacatcaatgacaatgcccctcagtttcctgtctcccaaatatctgtctgggtccct
gaaaatgcacctgtgaacacccggctggccatagagcacccagctgtggacccagacata
gggatgaatggggtacaaacctatcgcttactggactaccatggcatgttcaccctggat
gttgaggagaatgagaatggggagcgcaccccctacttaattgtcatgggctctttggac
agagaaacccaagatcattatgtgagcatcatcattgcagaggatggtgggtcaccacca
ctgacgggcagtgccaccctcaccatcggtattagtgacgttaatgataattgccctctc
ttcatggactcacaaattaatgttaccatctatgggaatgctacagttggtacccctatt
gcagccgtccaagctgtagatagagacttggggaccaatgcccagatcacctactcttac
agccagaaagttccacaagcatccaaggatttattccacctggatgaaaccaccggagtc
ataaagctttttagtaagattgggggaggcgttctacaaacacacaagctcaccattctt
gctaatggaccaggctgtatccctgctgtgatcactgctcttgtatccattatcaaagtc
actctcaggccacctgaaattgttcctcgttacatagcaaatgagatagatggtgttgtc
tacttgaaagaactggaacccatccacactccagttgcatttttcaccatcagagatcca
gaaggtaaacaaaaggtcaactgctacctggatggtgaaggaccgtttagattatcaccc
tacaaaccatacaataatgaatatttgctagagactaccaaacctatggactatgagctc
cagcggttctatgaaatagctgttgtggcctggaattctgaaggatttcatgccaagaga
atcattaaagtgcagctgttagatgacaatgacaatgctcctgttttccttcaacccttg
atagaactaaccattgaagaaaacaacccacccaatgcctttttgaccaagctgtatgct
accgatgctgacagtggcgagagagggcaagttttgtattttcttggacctgacgctcca
tcatatttttccttagacaatgtcacaggaattctgacagtttcaactcagctggaccga
gaagagaaagaaaaatataggtacacggtcagagctgtagactgtggaaagcctcccaag
gagtctgtagccactgtggctctcacagtgctggataaaaacgacaatagccctaggttt
attaacaaggacttcagctttttcgtgcctgaaaattttccaggatatggtgagattggg
gtgattagtgtaacagatgcagatgctgggcgaaatggatgggtggccctctcagtggtc
aaccagagtgatatttttgttatcgatacagggaagggtatgttgagagcaaaagtctct
ttggaccgagagcagcaaagctcttataccttatgggttgaagctgttgatgggggtgag
cctgccctctcctccactacaaaaatcaccattctccttctagatatcaatgacaatcct
cctcttgttttatttcctcaatctaatatgtcctatctgctggtactgccgtctactctg
cctggctccccagtaacagaggtctatgctgttgataaagacacaggcatgaatgctgtc
atagcttacagcatcataggcagaagagggcccagacctgagtcctttcggattgaccct
aaaactggcaacatcactttggaagaggccttgctacagacggattacggactccatcgc
ttgttagtgaaagtgagtgaccatggctaccctgagcctctccactccacagtcatggta
aacctgtttgtcaacgacactgtcagtaacgagagctacattgagagtctgttaagaaag
gaaccagaaattaatatagaggagaaagaaccacaaatttccatagaaccgacacacagg
aaggtagaatcggtgtcctgtgtgcccaccctagtagctctgtcagtgataagcctgggt
tccatcacacttgtgacaggcatgggcatatatatctgcttaaggaaagagaaaaagcct
cacagggaagatgacaatttggaagtacaaattccactaaaaggaaaaattgacttgcat
atgagggagaggaaaccaatggatatttccaacatttga
DBGET
integrated database retrieval system
