Ochotona princeps (American pika): 101527413
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Entry
101527413 CDS
T07609
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101527413 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opi03400
]
101527413 (LIG3)
Enzymes [BR:
opi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101527413 (LIG3)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
101527413 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101527413
NCBI-ProteinID:
XP_004593921
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All DBs
Position
19:23437753..23467468
Genome browser
AA seq
1007 aa
AA seq
DB search
MTLALKILFPQRLRALVRKELCLFRDQRHWPHIRQFSCWLEAGLHGRRLLQGSRPVLSFG
GGPLRPRATCLVFLSGSHVGLCSGPWEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSESGGEMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQIAQH
IADLSSKAAGTPKKKAVVQATLTSTGQVSSPVKGTSFATNANPRKFSGFSAKPNSSGPQS
SSSPTLKASLSSSKCDPKHKDCLLREFRKLCATVAENPSYNTKTQIIQDFLRKGSTGGGF
HGDTYLTVKLLLPGVIKSVYNLNDKQIVKLFSRVFNCNPDDMARDLEQGDVSETIRVFFE
QSKSFPPASKSLLTIQEVDEFLLRLSKLTKEDEQQQALQDIASRCTANDLKCIIRLIKHD
LKMNAGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQEVEKEPGRKRALSVQASLMT
PVQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVA
HFKDYIPKAFPGGHSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIY
FNDVSLMDRPLCERRNFLHDNMVEIPNRIMFSEMKQVTKASDLADMINRVIREGLEGLVL
KDVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPG
SQKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKA
AVWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFT
VVAGDEGHSTTGGSNGENGDTSGPAVSRKPSTSAKKTGGKQSDANSKGGNMTATKHSPVK
TAEKPARKSSPVKVGQKRKAPEETPCQVKVLLLDIFTGVRLYLPPSTPDFSRLRRYFVAF
NGDLVQEFDMASATHVLDSRNKNAEAQLVSPEWIWACIRKRRLVPPC
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgactttggctcttaagatcctcttcccacaaaggctccgtgctcttgtccgcaaagag
ctgtgcctgttccgagaccaacgccactggccccacatcagacagttcagctgctggttg
gaagcaggtcttcatgggcgccgcctcctccagggaagcaggcctgttctgtcctttgga
ggaggccctctgagaccgcgtgccacctgcctggttttcctgtctgggtcgcatgtggga
ctgtgcagtggcccctgggagatggctgagcaacggttctgcgtggactacgccaagcgt
ggcacagctggctgcaaaaaatgcaaggaaaagatcgtgaagggcgtttgccgaattggc
aaagtggtccccaatcccttctcagaatccggaggggagatgaaagagtggtatcacatt
aaatgcatgtttgagaagctggagcgcgcccgggccacaaccaaaaaaattgaggacctc
acagagctggaaggctgggaagagctggaagacaatgagaaggagcagatagcccagcac
atcgcagatctgtcttccaaggcagcaggcacaccaaagaagaaagctgttgtccaggct
acgttgacatccactggccaggtgtcatcaccagtgaaaggcacctcttttgctaccaac
gccaatccccggaaattttctggcttttcagctaaacccaacagttctgggcctcaaagc
tcctccagccctacccttaaggcaagtctgtcctcaagcaaatgtgaccccaagcacaag
gattgtctgctgagggagtttcggaagttgtgtgccacagtcgctgaaaaccccagctac
aataccaagacccagatcatccaggactttctgcggaaaggctctacaggaggtggtttc
catggtgacacgtacctgacagtgaagctcctgctgccaggtgtcattaagagtgtttac
aacttaaacgataagcagattgtgaagctcttcagccgcgtttttaactgtaacccggat
gatatggcacgggacctagagcagggtgacgtgtcagagacgatcagagtcttctttgag
cagagcaagtctttccccccagcttccaagagcctccttaccatccaggaagtggatgaa
ttcctcttgcgactctccaagctcaccaaagaggatgagcagcaacaggccctccaggac
atcgcctccaggtgtacagccaatgacctgaagtgcatcatcaggttgatcaaacatgac
ctgaaaatgaacgcaggtgccaagcatgtgttagatgctcttgaccccaatgcctacgaa
gccttcaaagcctcacgcaacctgcaggacgtggtggagcgggtcctgcacaacgagcag
gaggtggagaaggagccaggccgcaaacgggctctgagcgtgcaggcctcgctgatgacg
cctgtgcagcccatgctggctgaggcctgcaagtccattgagtacgcgatgaagaaatgc
cccaatggcatgttctccgagatcaagtatgacggcgagcgggtgcaggtgcataagaat
ggtgaccacttcagctacttcagccgcagtctgaagcccgtcctgcctcacaaggtggcc
cactttaaggactatattccaaaggcctttcctgggggccacagcatgatactagactcg
gaggtgctcttgattgacaacaatacaggaaaaccactgccctttgggactctgggagtg
cacaagaaagctgctttccaagatgccaatgtctgcctgtttgtgtttgactgtatctac
ttcaatgatgtcagtttgatggatcgacctctgtgtgagcgtcggaattttcttcatgac
aacatggttgaaattcccaacaggatcatgttctcagaaatgaagcaagtcacaaaagct
tcggacctggccgacatgatcaaccgagtgatccgggagggcttggaagggctggtgctg
aaggatgtgaagggtacatacgagcctgggaagcggcactggctgaaagtgaagaaggac
tatctgaatgagggtgccatggctgatacggctgacctcgtcgtcctgggggccttctat
gggcaggggagcaaaggtggcatgatgtcaatcttcctcatgggctgctatgatcctggc
agccagaagtggtgcacagtcactaagtgtgcaggaggccatgatgatgcgactcttgct
cgcctgcagaaagaactggacatggtaaagataagcaaggatcccagcaaaataccaagc
tggctgaagatcaacaagatctactatcctgacttcattgtcccagacccaaagaaagct
gcggtgtgggagatcacaggggctgaattctccaagtctgaagctcacacagctgacggg
atctccatccgattccctcgctgcacacgaatccgggatgataaggactggaaatctgcc
acgaacctcccccaactcaaggagctgtatcagttgtccaaggagaaagccgacttcacc
gtggtggctggagatgaagggcattccactacagggggcagtaatggcgagaatggtgac
acctcagggcctgctgtgtcccgcaaaccctctaccagtgccaagaagactggagggaag
cagagtgatgccaacagcaaaggtggtaacatgacggccacaaagcattctcctgtgaaa
acagcagagaagccagccaggaagtcttccccagtgaaagtaggacagaagcggaaagct
cctgaggagaccccatgccaagtgaaggtgctgctgctggacatcttcactggggtgcgg
ctctacttgcccccctccacgccagacttcagccgtctcagacgctactttgtggcattc
aacggagacttggtacaagaatttgacatggcttcagccacacacgtgttggacagcagg
aacaagaatgctgaggcccagcttgtctccccagagtggatttgggcgtgtatccggaaa
cggagactggtgcctccctgctag
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