Ochotona princeps (American pika): 101527558
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Entry
101527558 CDS
T07609
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X2
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101527558 (CHD1)
03036 Chromosome and associated proteins [BR:
opi03036
]
101527558 (CHD1)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
101527558 (CHD1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
101527558 (CHD1)
SLIK complex
101527558 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
101527558
NCBI-ProteinID:
XP_004586242
LinkDB
All DBs
Position
11A:complement(13545382..13604863)
Genome browser
AA seq
1700 aa
AA seq
DB search
MNGHSDEESARNSSGEASQSDDDCGSASGSGSGSSSGSSSDGSSSQSGSSESDSGSESGS
QSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQQQQQASSNSGSE
EDSSSSEDSDDSSSEIKRKKHKDEDWQMSGSGSPSPSGSDSESEEERDKSSSDETESDYE
PKNKVKSRKPLSRSKSKNAKKILGHKKRQLDSSEDEDDEDYDNDKRSSRRQATVNVSYKE
DEEMKTDSDDLLEVCGEDVPQPEEEEFETIERFMDCRIGRKGATGATTTIYAVEADGDPN
AGFEKNKEAGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKKDQETKRWLK
NASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWE
DGALISKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDY
QLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTS
WQREIQTWASQMNSVVYLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKAFLG
GLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEK
FSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ
YYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEFYNKQEALQHLI
RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRK
QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK
KQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSAPSSSTPFNKEE
LSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETHENEPGPLTVGDELLSQFKVANF
SNMDEDDIELEPERNSKNWEEIIPEDQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNG
SEGRRSRSRRYSGSDSDSVSESKRPKKRGRPRTIPRENIKGFSDTEIRRFIKSYKKFGGP
LERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPTFRI
SGVQVNAKLVISHEEELVPLHRSIPSDPEERKQYTVPFHTKPANFDIDWGKEDDSNLLIG
IYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLSRDLAKKAQRL
SGSGGSKKKKISTKKNKSKSMKVKEEIRSDSSPLASEKSDEDDDKLSESKSESKERCKRP
AMSDAPVHITASSEPVPISEESEELDQKTFSICKERMRPVKAALKQLDRPEKGLSEREQL
EHTRQCLIKIGDHITECLREYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKR
QESQQNSDQNSSLNVHAIRNPDVERLKESTNHDESSRDGYSSERHLSQHHDHHKERHQGD
AYKKSESRKRPYSCFSNGKDHREWDHYKQDSRYYSDREKHRKLDGHRSRDHRASLEGSLK
DRPHADHRSRPDHRPGSEYTHHKSSRDYRYHSDWQMDHRVSSSGPRSPLDQRSPYGSRSP
FEHAVEHRSTPEHTWSSRKT
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacacagcgatgaagaaagtgctagaaacagcagtggcgaggcaagccagtcg
gatgacgactgtgggtcagcttcgggctctggatctggctccagctcgggaagcagcagt
gatgggagcagcagccagtcgggcagcagcgagtctgactccgggtctgagtcgggcagt
cagtccgagtccgagtccgacacttcccgggagaacaaagttcaggcgaagccgcccaaa
gtggatggagccgagttttggaaatccagccctagtattctggccgtccagagatctgca
atgcttaagaagcagcaacagcaacaacaacagcaagcctcatccaacagtggatcggaa
gaagattcctctagcagtgaagattccgatgattcatcaagtgagataaaaaggaaaaaa
cataaagatgaagactggcagatgtctgggtcggggtctccatctccgtcgggctcagac
tcggagtctgaagaggagagagataaaagcagttctgacgaaaccgaatcggactatgag
ccaaaaaacaaagtcaaaagcagaaaacctctaagtcggtccaagtcaaaaaatgcgaag
aagattcttggacacaaaaagagacagcttgattcatctgaggatgaggatgatgaagat
tatgacaatgataaaagaagttctcgtcgccaagcaactgtcaatgtcagctataaggaa
gacgaagagatgaaaacggactctgacgacctgctggaggtgtgcggagaggatgttcct
cagcccgaagaggaggagtttgaaacaattgaaaggtttatggattgtagaattgggaga
aaaggagctactggtgctacgacaaccatctatgcagtcgaagcagatggcgacccaaat
gcggggttcgagaaaaacaaggaggcgggagagatccagtatctaattaaatggaaggga
tggtcccatatccataatacttgggaaacagaggaaacccttaagcagcagaatgttaga
ggaatgaaaaaattagataattataagaagaaagatcaggaaacgaaacgatggttgaag
aatgcttctccagaagatgtagaatattacaattgccagcaggagctgacagatgatctg
cataagcagtaccagatagtggagcgcatcatcgctcattccaatcaaaagtcagcagcc
gggtatcccgattattattgcaagtggcagggtctgccatattcggagtgcagctgggaa
gacggagctctcatttccaaaaagttccaagcacgcattgatgaatacttcagcaggaac
cagtcaaaaaccactcctttcaaagactgcaaggtattaaaacaaagaccaaggtttgta
gccttgaagaagcaaccatcctatattggaggacacgaaggtttagaattaagggattat
caactaaatggtttgaattggcttgctcactcatggtgcaaaggcaatagctgcatcctt
gctgatgagatgggccttggaaaaacgatccagacgatctcgtttctcaattacttattt
cacgaacatcagttgtacggtcctttcctgttggtcgtgccgctctccactctcacctcc
tggcagagggagattcagacgtgggcttctcagatgaattctgtggtgtacttaggagac
attaatagcaggaacatgataagaactcatgaatggatgcaccctcagaccaaacgcttg
aagtttaacatattattaacaacttacgaaattttgctgaaggataaggcattccttgga
ggtctcaattgggcatttatcggcgttgatgaagcccatcggctaaagaatgatgattct
cttctgtataaaaccttaatagattttaaatccaatcaccgtctcctcatcactggaaca
cctcttcaaaattccctcaaagagctctggtctttgctacatttcattatgccagaaaag
ttttcttcttgggaagactttgaagaagagcatggcaaagggagagagtacggctacgct
agcctccacaaggagctggagccctttctgctgcgccgagtgaaaaaggacgtggaaaaa
tctctccctgccaaagttgagcagattttaagaatggaaatgagtgctttacaaaaacaa
tattacaaatggattttaaccaggaattacaaagccctcagcaaaggttccaagggcagt
acctcaggctttttgaacattatgatggagctaaagaaatgttgtaaccattgctacctc
atcaagccaccagataataatgaattttataataaacaggaggccttacaacacttaatt
cgtagtagcggaaaattgattcttcttgacaagcttttaattcgtctcagagaacgaggc
aatcgagtccttattttttctcagatggtgcggatgttagatatacttgcagagtatcta
aaatatcgccagtttccctttcaaagattagatggatcaataaaaggagagctgcggaaa
caagctctggatcactttaatgctgagggctcagaggatttctgctttttgctttccaca
agagctggaggtctagggattaatctggcctctgccgacactgttgttatatttgattct
gattggaatccacaaaatgatcttcaggcacaggctagagcacaccgaattgggcagaag
aaacaggtgaatatttatcgtctagttacaaagggatcggttgaagaggatattctggaa
agggccaaaaagaagatggttttggatcatcttgtgattcagagaatggacacaaccggg
aagacagtgctgcacacaggctccgccccatccagttctactcctttcaataaagaagaa
ttatcagctattttaaagtttggtgctgaagaactttttaaggaacctgaaggagaagaa
caagagccacaggaaatggatatagatgaaatcttaaagagggctgaaactcatgaaaat
gaaccaggccctttgaccgtgggggatgaattactttcccagttcaaggttgccaatttt
tcaaatatggatgaagatgacattgaattggaacctgaaagaaattcaaagaattgggag
gaaatcattccagaagatcaaagacgacgattggaagaagaagaaagacaaaaggaactt
gaagaaatttacatgctcccaagaatgagaaattgtgcaaaacagattagcttcaatgga
agtgaagggagacgcagtagaagtaggagatactctggatctgacagcgattccgtctcg
gaaagcaagaggccgaagaagcgtgggagacctcggactattcctcgggagaatattaaa
ggatttagtgacacagagattaggcggtttatcaagagctataagaaatttggtggccct
ttggaaaggttagatgcaattgcccgagatgctgaattagttgataagtcagaaacggac
ctcagacggctaggagaattggtgcacaacggttgcattaaagccctgaaggacagttct
tcaggaacagaacgaacaggtggtcgactcggaaaagtaaaggggccaacattccgaata
tcaggagtacaggtgaatgccaagctagtcatttcccatgaagaggaattagtacctctg
cacagatccattccttcagatccggaagaaagaaaacagtatactgtcccatttcatacg
aaaccagctaattttgatatagactggggaaaagaagatgattctaatttgttgattggc
atctatgagtatggatatggaagctgggaaatgattaaaatggatcctgatctcagtcta
actcacaagattcttcctgatgatcctgataaaaaaccacaagcaaagcagttgcagacg
cgtgcagactacctcattaagttactcagcagagaccttgcaaagaaagctcagaggctc
tctggttctggaggttcaaagaagaaaaaaataagcactaagaagaataaatcaaaatct
atgaaagtaaaagaggaaataagaagtgactcttctccactggcctcagagaagtctgat
gaagatgatgataagttaagtgaatccaagtctgaaagtaaggaaaggtgtaagagacct
gccatgtcagatgctccagtccatatcactgcgagcagtgagccagtgcctatatcggag
gagtcggaagagctggatcagaaaacgttcagcatttgtaaagaaagaatgaggcccgtg
aaagcagcattaaaacagctcgaccgccccgagaaaggcctttctgaaagagagcagctg
gaacacacgagacagtgcttgataaagattggagaccacatcactgagtgtctgagagag
tatacaaaccctgagcaaattaagcagtggagaaaaaacctatggatttttgtatctaag
tttactgaatttgatgcaagaaaattacataaattatataagcatgcaattaagaaacgg
caagaatctcagcaaaacagtgaccagaacagcagcctgaacgttcatgcaataagaaat
ccagatgtggaaagattaaaagagagtaccaatcatgatgagagcagcagggacggctac
tcctctgagcgacacttgtctcagcaccatgaccaccacaaggagcggcatcagggagac
gcctacaagaaaagcgagtctaggaagagaccctattcctgtttcagcaacgggaaagac
catcgggagtgggatcactacaagcaagacagcaggtattacagtgatagagagaaacac
aggaagctggatggccacaggagtagagatcacagagcaagcctggaaggaagtttaaaa
gacagaccgcatgctgatcaccgttcccgtccagaccatcggccaggttctgaatacaca
caccataagtcttccagggattacaggtatcactcggactggcagatggaccacagagtc
tccagcagtggcccgaggtcacccctggaccagaggtctccttacggctccaggtcccca
ttcgaacacgcagtggaacacagaagcacgcctgagcacacctggagtagtcggaagaca
taa
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integrated database retrieval system
