Ochotona princeps (American pika): 101527639
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Entry
101527639 CDS
T07609
Symbol
TAF1C
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101527639 (TAF1C)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
101527639 (TAF1C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_HB
TAF1C_beta-prop
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
101527639
NCBI-ProteinID:
XP_004584116
LinkDB
All DBs
Position
5:complement(49033387..49038138)
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AA seq
840 aa
AA seq
DB search
MDFPDCLRPSLFMSGPLGLSDSPDLSFMCSWRDALTLPEPQPPKNRLPPLAKDLLWEPAT
PGPLPLLPPGPDPWDPGVTAQDLLFRTGYLYRRRPRVVLDVTEQLSRFLWDHGDIAFAPL
GKLMLENFELDGDPKRTKKSTVVIVKKLLEDLGGYQPWGCPWASLSHRQRRFSFLGGSVL
GRSVASVLGELLHEELALRWEQLLLDEAFTGGALAWLPGRTPRVGRLVYPAGGALDTLHF
QEVSLASGGRPRVLGTPGRIQLRGPVRQVVTCTVQGEALLAVRSNYHCAVWKVGKQGPPT
PLQVLQVRKGAAGISLSPHLPGELAVSSHSGTICLWTPEDGLRQVYKDPETLVFRDPSPW
RWADFTAHPRVLTVGDRTGVKLVDTQGPAGCGLLLFRAGAEASCQKGERVLFTQYLGLPS
PGALPPTMHLICTQFSLYLVDERCPLVPMLKWDHGLPSPPLLAQLLPPPQPGYPQPLLLG
AHGGQLQLLQLTGDVSSTPRLAGPPQSLPSRTDSLAAFPLLEPRSHWQLQERLAAPAIGL
AAAFVPMAPTPALSVFQLSSAGDIFYQYLHLQANSSPRQDKPGPDCQTSQSAEPSLNKPP
TCPTSWTPQATACCGRWLDALLEVPPIPPVWAAPTFSHRRLLPRLDAQHVGGKVPEVLRT
AMAEGRLLQPKDLGSLPAAEPPPAPELAPEDELSERLGEAWEGRGAAWWERRQGGPMEPR
RQLRRAKRRTQLSSTFSLSSQLDLSSANSPPPSLDRTCLEAGPCSPVTSTSQESRAQGVP
SERRQSLRSYGAELPLQKDTPDCAATPPSQVSGLRATPSQQRTPVLPSSQPQRKRPRMGF
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggacttccccgactgcctccgcccctcgttattcatgagtggccccctgggcctgagc
gacagccctgacctgtccttcatgtgcagctggagagatgccctcaccctgcctgagccc
cagccgcccaagaacaggctgccgcccctggccaaggacctgctgtgggagccggccacg
ccagggcccctccccctgctgcctcctggcccggatccttgggaccccggtgtgactgcg
caggacctcctgttccgcacaggttacctgtaccgccggcgaccacgcgtcgtgctggat
gtcaccgagcagctcagccgctttctgtgggatcatggggacattgcctttgcacccctg
gggaagctgatgctggagaattttgaactggacggagacccgaaacgcacgaagaagagc
acggtggtgattgtgaagaagctgctggaggacctcggaggataccagccgtgggggtgt
ccctgggcttccctcagccaccggcagcgccgtttctccttcctggggggctcagtgctg
ggcaggtcggtggccagcgtgctgggggaactgctgcacgaggagctggccctgcgctgg
gagcagctcctgctggacgaggccttcactgggggcgccttggcctggctccctggcagg
acgccccgagtcggacggctggtctaccctgctgggggcgccctggacaccctccacttc
caagaagtcagcctggcctccgggggcaggccgcgcgttcttgggacccctggacgcatc
cagctccggggacctgtccggcaggtggtgacctgcaccgtgcaaggagaggccctgcta
gccgtgcgctccaactaccattgtgccgtgtggaaggtggggaagcaggggccgccgacc
cctctgcaggtgctgcaggtcaggaagggtgctgcgggcatcagcctcagccctcacctg
ccaggggagctggcggtcagcagccactctggaaccatctgtctgtggacccccgaggat
gggctgcggcaagtgtacaaggaccccgagactctcgtgttccgcgacccatcaccctgg
cgctgggcggacttcactgcccatccccgggtgctgaccgtgggtgaccgcaccggcgtc
aagctggtggacactcagggccctgctggctgtggtctgctgcttttccgtgctggggca
gaggcttcctgccagaagggggaacgtgtgctgttcacccagtacctggggctgcccagc
cctggggcactccctcccacgatgcatctcatctgtacccagttctcgctctacctggtg
gacgagcgctgtcccctggtgccaatgctcaagtgggaccatggcctcccctccccaccc
ctgctggcccagctgctgcccccacctcagcctggctacccacagcccctgctcctgggc
gctcatggcgggcagctgcagctacttcagctcacaggagacgtgagctccacacccagg
ctggcaggaccgccccagtcactcccgtccaggaccgactccctcgctgccttccccttg
ctggagcccaggagccactggcagctgcaggagcgcctggctgcaccagccataggtctg
gctgctgcctttgtccccatggccccgacaccagcactgtcggtcttccagctctcgtcg
gcaggagacatcttctaccaatacctccacctccaggccaactccagcccccgccaggac
aagcctgggcctgactgccagacctcccagtcagcagaaccctccctgaacaagccaccc
acatgccccacttcctggacaccccaggccactgcctgctgcggccggtggctggatgcc
ttgctggaagtgcccccgatccccccagtttgggctgcgcccaccttttcccaccgacga
ctgctccctcgactggatgcccagcatgttggagggaaggtgccagaagtcctccggacg
gccatggctgaggggcggctcctgcagcccaaggacctgggctcgctgcctgcagctgag
ccaccccccgcaccggagttggcccccgaggacgagctcagtgagcgcctcggggaggcc
tgggaaggccgcggggcggcctggtgggagcggcggcagggcgggccaatggagccccgc
aggcagctcaggcgggccaagcggcggacacagctgtccagcaccttctcgctcagcagc
cagttggacctctccagtgccaacagcccacctcccagcctggaccggacgtgcctggag
gccggaccatgttccccagttacctcaacttcccaggagtccagggctcagggtgtcccc
tcggagcggcggcagagcctccggagctacggggctgagctacccctgcagaaggacacc
ccagactgtgccgccacacccccctctcaggtctctggcctccgggccaccccttcccag
caacgcacccctgtcctccccagctctcagccccagcgcaagaggcctcgcatgggcttc
tga
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