Ochotona princeps (American pika): 101527927
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Entry
101527927 CDS
T07609
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03082
ATP-dependent chromatin remodeling
opi04714
Thermogenesis
opi05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101527927 (ARID1B)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
101527927 (ARID1B)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
101527927 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101527927 (ARID1B)
03021 Transcription machinery [BR:
opi03021
]
101527927 (ARID1B)
03036 Chromosome and associated proteins [BR:
opi03036
]
101527927 (ARID1B)
Transcription factors [BR:
opi03000
]
Eukaryotic type
Helix-turn-helix
ARID
101527927 (ARID1B)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101527927 (ARID1B)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101527927 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
CCD97-like_C
Motif
Other DBs
NCBI-GeneID:
101527927
NCBI-ProteinID:
XP_004595504
LinkDB
All DBs
Position
12:144185376..144564142
Genome browser
AA seq
2225 aa
AA seq
DB search
METGLLPNHKLKAVGEAPAAPPHHHHHLHHHHHHAHHHHHHAHHLHHHHHALQQQLNQFQ
QQQEQQQQAQQQRQHQQHPISNNNGLGGAPQPGPDMEQPQHGGAKDSAAGSQADPSGQPL
LSKPGDEDDAPPKMGEPAGGRYEHPGLGALGAQQSQAAVPGGGGGSGPAAVSEFNNYYGS
AAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPNSMDPLQNSHEGYPNSQYNH
YPGYSRPGAGGGGGGGGGGGGGGGGGAGAGAGAGAVAAAAAAAAAAAAGGGGGGGGGGGY
GGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAGGFQRFAGQNQHPSGATPT
LNQLLTSPSPMMRSYGGSYSDYSSPSAPPPPPSQPQSQAAAAAGGQQAAAGMGLGKDMSA
QYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPMVMKRPQLYGMGSNPHSQPQQ
SSPYPGGSYGPPGPQRYPVGIQGRTPGAMGGMQYPQQQMPPQYGQQGVSGYCQQGQQPYY
NQQPPPHLPPQAQYLPAQSQQRYQPQQDMSQEGYGTRSQPALAPGKPNHEDLNLIQQERP
SSLPDLSGSIDDLPTGTEAALSSAVSASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGP
SPSPVGSPVGSNQSRSGPISPASIPGSQMPPQPAGSQSESSSHPALSQSPMPQERGFMAG
TQRNPQMSQYGPQQTGPSMSPHPSPGGQMHPGIGSFQQSNSSGAYGPQMSQYGPQGNYSR
PPTYSGVPSASYSGPGPGMGINANNQMHGQGPSQPCGAVPLGRMPAAGMQNRPFPGNMSS
MTPSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFPGMNQSGLMAS
GSPYSQPMNNSSGLMNAQAPQYSMTPSVVNSSAASMGLADMMSPGESKLPMALKADGKEE
GPAPPESKAKDSYGSQGISQPPTPGNLPVPSPMSPSSASISSFHGDESDSISSPGWPKTP
SSPKSSSSTTTGEKITKVYELGNEPERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFR
LYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEP
PPEVFSTGDTKKQPKLQPPSPANSGSLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQ
LTPMPGGRSSTISVHDPFSDVSESAFPKRNSMTPNAPYQQGMSMPDMMGRMPYEPNKDPF
GGIRKVPGSGEPFMTQGQMPNSSMQDMYNQSPSGAMASLGMGQRQQFPYGGGYDRRHEPY
GQQYPGQGPPSGQPPYGGHQPGLYPQQPNYKRHMDGMYGPPAKRHESDMYNMQYSAQQQE
MYNQYGSSYSGPDRRPMQGQYPYPYNRERMQGPGQLQPHGIPPQMMGGPMQPSSGEGPQQ
NMWAARNDMPYPYQNRQGPGGPGQAPPYPAMGRTDDMMVPDQRINHESQWPSHVSQRQPY
MASAASMQPITRPPQSSYQTPPSLPNHISRAPSPASFPRSLENRMSPSKSPFLPSMKMQK
VMPSVPTAQVAGPPPQPPPIRREITFPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMS
LKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGILMEYE
VGDPSQKALDHHAAKKEDGQSPADDSGKEDEAESLDEEEEEEDEDEEEAEKPETEAKGSA
APPPDATADPKEKPKQASKFDKLPIKIVKKNKLFVVDRSDRLGRVQEFTSGLLHWQLGGG
DTTEHIQTHFESKMEIPPRRRPPPPPSTTGRKKEPEGRGDSEEQPEKSIIATIDDVLSAR
PGALPEDANPGPQAESNKFPFGIQQAKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKR
CICVSNIVRSLSFVPGNDAEMSKHPGLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKG
VACSKDAWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQ
DPFPTVGPNSVLSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKN
PVCREMSMALLSNLAQGDTLAARAIAVQKGSIGNLISFLEDGVTMAQYQQSQHNLLHMQP
PPLEPPSVDMMCRAAKALLAMARVDENRSEFLLHEGRLLDISISAVLNSLVASVICDVLF
QIGQL
NT seq
6678 nt
NT seq
+upstream
nt +downstream
nt
atggagacggggctgctccccaaccacaaactgaaagccgttggcgaggcccccgccgca
ccgccccaccaccaccaccacctccaccaccaccaccaccatgcccaccaccaccaccac
catgcccaccacctccaccaccaccaccacgcactacagcagcagctaaaccagttccag
cagcagcaggagcagcagcagcaagcacagcagcagcggcagcaccaacaacatcccatt
tccaacaacaacggcctgggcggcgcgccccagccgggccccgacatggagcagccgcaa
catggaggcgccaaggacagtgccgcgggcagccaggccgacccctcgggccagcctctg
ctgagcaagccgggcgacgaggacgacgcgccgcccaagatgggggagccggcgggcggc
cgctacgagcacccgggcctgggcgccctgggcgcgcagcagtctcaggccgccgtgccc
gggggcggcggtggcagcggcccggcggccgtctcggagtttaataattactatggcagc
gctgcccctgctagcggcggccccggcggccgcgctgggccttgctttgatcaacatggc
ggacaacaaagccccgggatggggatgatgcattccgcctcagccgccgccggggccccc
aacagcatggaccccctgcagaactcccacgaagggtaccccaacagccagtacaaccat
tatccgggctacagtcggcccggcgcgggcggcggcggcggcggcggaggaggaggagga
ggaggaggaggaggaggagcaggagctggagcaggagcgggagctgtggcggcggcggcc
gcggcggcggcagcagcagcagcaggaggcggcggcggcggcggtggcggcggcggctat
gggggctcgtcctcggggtatggggtgctgagctccccccggcagcagggcggcggcatg
atgatgggccccgggggcggcggggccgcgagcctcagcaaggcggccgccggcgcggcg
gctgggggcttccagcgtttcgccgggcagaaccagcacccgtcgggggccaccccgacc
ctcaaccagctgctcacctcgcccagccccatgatgcggagctacggcggcagctactcc
gactacagcagccccagcgcgccgccgccgccgccgtcgcagccccagtcccaggcggcg
gcggcggcgggcggccagcaggcggccgcgggcatgggcttgggcaaggacatgagcgcc
cagtatgccgctgccagcccggcctgggcggccgcgcaacaaaggagtcacccggcgatg
agtcccggcacccctggaccgaccatgggcagatcccagggcagcccgatggatccgatg
gtgatgaagagacctcagttgtatgggatgggcagtaacccccattcgcagccgcagcag
agcagtccctacccaggaggctcctacggtcccccaggccctcagcggtaccctgttggc
atccaggggcggacccccggagctatgggcgggatgcagtacccgcagcagcagatgcca
cctcagtatggacagcaaggcgtgagcggttactgccagcagggccagcagccttactac
aaccagcagccgccaccacacctcccgccgcaggcgcagtacctcccggctcagtcccag
cagaggtaccagcctcagcaggacatgtctcaggaaggctacggaactaggtcccagcct
gctctggcccctggaaagcctaaccacgaagacttgaacctaatccaacaagaaagacca
tcaagcttaccagacctgtctggctccatcgatgacctccccacaggaacagaggcagct
ctgagctcggcggtcagtgcctcagggtccacgagcagccagggggaccagagcaacccg
gcccagtcacctttctcgccacatgcatccccccacctctccagcatccccggtggcccg
tcgccttctcccgtgggctctcctgtcggcagcaaccagtcgcgatcggggcccatttct
cctgcgagtattccaggcagtcagatgcctcctcagccagctgggagccaatcagaatcc
agttcccatcctgccttgagccagtctccaatgccacaggaaagaggttttatggcaggc
acacaaagaaaccctcagatgtctcagtatggacctcagcagacaggaccatctatgtcg
cctcatccgtctcctgggggccagatgcatcctggaatcggtagctttcagcagagtaac
tccagtggggcttacggtccacagatgagtcagtatggaccacaaggtaactactccaga
cccccaacgtatagtggggtgcccagtgcaagctacagcggcccagggcccggtatgggt
atcaatgccaacaaccagatgcatggacaagggccaagccagccatgtggtgctgtgccc
ctgggacgaatgccagcggctgggatgcagaacagaccatttcctggaaatatgagcagc
atgacccccagttctcctggcatgtctcagcagggagggccaggaatggggccgcccatg
ccgaccgtgaaccggaaggcgcaggaggcagctgcagcggtgatgcaggcagctgcaaac
tcagcacaaagcaggcaaggcagtttccccggcatgaaccagagcggcctcatggcttcc
ggctctccgtacagccagcccatgaacaacagctccggcctcatgaacgcgcaggcgccg
cagtacagcatgacgccgtccgtggtgaacagctccgcagcatctatgggtcttgcagat
atgatgtcgcctggtgaatccaaactgcccatggctctgaaagcagatggcaaagaagaa
ggccctgcaccgcccgagagcaaggcaaaggatagctacggctctcagggtatttctcag
cccccgacccctggcaacctgcccgtcccttccccaatgtcccccagctctgctagcatc
tcctccttccacggggatgagagtgacagcattagcagtccaggctggccaaagactcca
tccagccctaagtccagctcgtccaccaccacgggggagaagatcaccaaggtgtatgag
ttggggaatgagcccgagcggaagctgtgggtcgacaggtacctcactttcatggaggag
cggggctccccggtctccagcctgcctgcggtgggcaagaagcccctggacctgttccgg
ctgtacgtgtgcgtcaaagagatcgggggcttggcacaggttaataaaaacaagaagtgg
cgtgagctggcaaccaacctaaatgttggcacctcgagcagtgcagcaagctccctgaaa
aagcagtatatccagtacctgtttgcctttgaatgcaagatcgagcgaggggaggagccc
ccaccagaagtctttagcaccggtgacaccaagaagcagcccaagctgcagccgccatct
cctgctaactcaggatccttgcaaggccctcagaccccccagtcaaccggcagcaactcc
atggcagaggtgcctggggacctgaagccaccgaccccggcctccacgcctcacgggcag
ctgacccccatgccaggcggcagaagcagtacaatcagcgtgcacgacccgttctcagat
gtgagcgaatcagccttccccaaacggaactcgatgactccgaacgccccctaccagcag
ggcatgagcatgccagacatgatgggcaggatgccctatgaacccaacaaggaccccttt
ggtggaataagaaaagtgcctgggagtggcgagcccttcatgacgcaaggccagatgccc
aacagcagcatgcaggacatgtacaaccaaagtccctctggagccatggccagcctgggc
atggggcagcgacagcagtttccctatggaggcggctatgatcgaaggcatgaaccctac
gggcagcagtacccagggcaaggtcctccctcgggccaaccgccgtacggagggcaccag
cctggcctctacccacagcagccgaattacaagcgccacatggacggcatgtatgggccg
ccagccaagcgccacgagagcgacatgtacaacatgcagtacagtgcccagcagcaggag
atgtacaaccagtatgggagctcctactccggccccgacaggaggcccatgcagggccag
tacccgtacccctacaaccgcgagcggatgcagggccctggccagctgcagccgcacggc
atcccccctcagatgatggggggccccatgcagccgtcctctggcgagggacctcagcag
aacatgtgggcagcacgcaacgatatgccttatccctaccagaacaggcagggccccggc
ggccccggccaggcccccccatacccggccatgggccgcacggatgacatgatggtccca
gatcaaaggatcaaccacgagagccagtggccttctcacgtcagccagcgtcagccttac
atggcatctgcagcctccatgcagcccatcacgcgcccgccgcagtcctcctaccagacg
ccgccgtcactgccaaaccacatctccagggcgcccagcccagcctccttcccgcgctcc
ctggaaaaccgcatgtcccccagcaagtctcccttcctgccgtcgatgaaaatgcagaag
gtcatgcccagcgtgcccacggcccaggtggccgggccgcccccccagcctcctcccatc
agacgagagatcaccttcccgcccggctcagtggaggcctcacagcccgtgctgaaacaa
aggcgaaagattacctcaaaagatatcgttacccccgaggcgtggcgtgtgatgatgtcc
cttaagtctggtcttttggctgagagcacctgggctttggacaccatcaatattcttctc
tatgatgacagcaccgttgctactttcaatctttcccagttgtctggattcctcgaactc
ttagtcgagtactttagaaaatgtctgattgacatttttggaatcctcatggaatatgaa
gtgggagatcccagccaaaaagcacttgatcaccatgcagcaaagaaagaggacggccag
tccccagcagatgattctgggaaagaggacgaggccgaaagcctcgacgaggaggaggag
gaggaagacgaggacgaggaggaggctgagaagccagagacagaggccaagggcagtgca
gctccgccgccagatgccaccgcagacccaaaggagaagcccaagcaagccagcaagttc
gacaagctgccaatcaagatcgtcaaaaagaacaagctgtttgtggtggaccggtcagac
cggctcgggcgcgtgcaggagttcaccagcgggcttctgcactggcagctgggcggcggc
gacaccacggagcacatccagacccactttgagagcaagatggagatcccgccccgcagg
cgcccaccaccacccccgagcaccacgggcaggaagaaggagccggaaggcagaggggac
agcgaggagcagccggagaagagcatcattgccaccatcgacgacgtcctgtctgctcgg
ccgggggcgctccctgaagacgccaaccctgggcctcaggccgagagcaacaagttcccc
tttggcatacagcaagccaaaagccaccggaatatcaggctgctggaggacgagcccagg
agccgcgacgagacgccactgtgcaccatcgcgcactggcaggactcactggccaagcgc
tgcatctgtgtgtccaacatcgtgcgcagcttgtccttcgtgcctggcaacgatgccgag
atgtccaaacatccgggcttggtgctgatcctgggaaagctgatcctgcttcaccacgag
catcccgagaggaaacgggcaccacagacctacgagaaggaggaggatgaggacaagggg
gtggcctgcagcaaggacgcgtggtggtgggactgcctcgaggtcctgcgggacaacacg
ctggtcacgttggccaacatttccgggcagctagacttgtctgcctacacggaaagcatc
tgcttgcccatcctggatggcttgctgcactggatggtgtgcccttctgccgaggcacaa
gaccccttccccacggtgggacccaactcggtcctgtcgccacagaggctcgtgctggag
accctctgcaaactcagtatccaggacaataacgtggacctcatcctggccactcctcca
tttagccgtcaggagaaattctatgctacgttagttaggtacgtgggggatcgcaaaaac
ccagtctgtcgagaaatgtccatggcgctgttgtcgaaccttgcccaaggggacacgcta
gcagcaagggccatagctgtgcagaaggggagcattggaaacttgataagcttcctggag
gacggggtcactatggcccagtaccagcagagccagcataacctcctgcacatgcagccc
ccacctctggaaccacctagcgtagacatgatgtgcagggcggccaaggccttgctggcc
atggccagagtggacgaaaaccgctcagaattccttttgcacgagggccggttgctggat
atctcaatatcggctgtcctgaactcgctggtcgcatctgtcatctgtgatgtactgttt
cagattgggcagttatga
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integrated database retrieval system
