Ochotona princeps (American pika): 101528060
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Entry
101528060 CDS
T07609
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X2
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04612
Antigen processing and presentation
opi05145
Toxoplasmosis
opi05152
Tuberculosis
opi05164
Influenza A
opi05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
101528060 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
101528060 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
101528060 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
101528060 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
101528060 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
opi01001
]
101528060 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
opi04054
]
101528060 (CIITA)
Enzymes [BR:
opi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
101528060 (CIITA)
Protein kinases [BR:
opi01001
]
Serine/threonine kinases: Other
TAF1 family
101528060 (CIITA)
Pattern recognition receptors [BR:
opi04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
101528060 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
LRR_14
AAA_16
LRR_9
CARD
Motif
Other DBs
NCBI-GeneID:
101528060
NCBI-ProteinID:
XP_004586810
LinkDB
All DBs
Position
6:12563825..12603284
Genome browser
AA seq
1157 aa
AA seq
DB search
MNHFQAILTQVQMLLSCHGQKQVRALLDHLLEEELLSREYHCALLHEPDGEALARKISLT
LLEKRDLDVALLGWAQSGWQAPAAERNPELKDHAGGGSCATMELGSLEGKYLELLNSDAD
PLHLYHFYDQIGLTAEEETELCSEPYTDTINCDQFSRLLCDIEGDEETREAYANIAELDQ
YVFQDSQLEGLSKDIFKHIGSDDVIGENAEVPVEAVQESQKRPFPEECPVDLKQRRLVPT
SPSLSCTNLAAGPIQFIPTLSTPPQWLWQIPGAGAGISSIFIYHGKLPQASQAPPPSSPA
VHSLPKSPDRPGSTSPFAPSSADLPSMPEPALTSRADVIEDSVHPTESQEPREVSSKLPK
WPEPVRQLWHSLQDKFQDEPAGPDGIQMEVALVRAQLERSGTKSQDRELATLDWAERQLA
HGGPAEVLLAAGKHRRPRETRIIAVLGRAGQGKSHWARAVGRAWARSQLPQFDFVFHIPC
HCLDRPGDAYRLRDLLLSPQSSSLAVDDEVVSHVLKRPERVLLILDGFEELEAQEGFLPS
VGGPGASEPCSLRGLLAGLLQRKLLPGCTLLLMARLWGRLGQSLSKADALFELAGFSAEQ
AQAYVACYFERSGAPEQREQALTLLRDRPFLLSHCHSPTLCRVACQLAQASLKRGDRDPL
PSTLTGLYVELLGPAIRAGPPGALLGLARLAWESGRRHQRTLRKGHFPSEELRTWAVARG
LVQPGPGATEAELAFPSFLLQCFLGAIWLALSCEVKDKELPQYLALTPRKKRPYDNWLEG
VPRFLTGLLFQPRARCLAALMGSEVAAVVDRKQKVLTRYLKRLQPGTLRARRLLELLHCA
HEAEEAGIWQHVVRELPARLSFLGTRLTPPDVHVLARALEAAGRDFSLDLRSTGIDPSGL
ASLVGLTHVGSFRSNLSDTVGLWESLQQRGETKLLHAAEEKFTIEPFRAKSLKDVEDLGN
LVQTQRMRSASADEIGDLPAVRDLKKLEFALGPTSGPQAFPKLVRVLTAFSSLQHLDLDS
LSENKIGDEGVSQLAATFPQLKSLETLNLSQNSITDVGACKLAEALPSLAASLLRLSLYN
NCICDVGAGSLAQVLPDMVSLRVMDVQYNKFTAAGAQQLAASLRKCPHVETLAMWTPTIP
FGVQEHLQQLDSRISLR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaccactttcaggccatcctgactcaggtccagatgctgctctcttgccatgggcag
aagcaggtgcgggctctcctggaccacctgctggaggaagagcttctctccagggagtac
cactgtgccctgctccatgagcctgatggtgaggcgctggccaggaagatctccttgact
ctactcgagaaaagagacctggatgtggccctcttgggatgggcccagagtgggtggcag
gctccagcagcagagagaaaccctgagctcaaggatcatgctggtggtggatcgtgtgcc
accatggagttggggtctctggaagggaaatacctggaacttctcaacagtgacgctgat
cccttgcacctgtaccacttctacgaccagatcggcctgactgcagaagaagagactgag
ctttgctcagaaccctacacagacaccatcaactgtgaccagttcagcaggttgctgtgt
gacattgaaggtgacgaagagaccagggaggcttatgccaacatcgcggaactggaccag
tatgtgttccaggactcccagctggagggcctaagcaaagatattttcaagcatatagga
tcagatgacgtgattggtgagaacgcagaggtgccagtggaagcggtgcaggagagtcag
aagagacccttcccagaggagtgtccagtggacctgaagcagcggaggctagttccaaca
tccccctccttgagctgcacaaacctcgctgctggacccatccagttcatccccactcta
tccactccaccccagtggctctggcaaatcccaggagctggggctggcatctccagtata
ttcatctatcatggcaagctgccccaggccagccaagcaccgcctcccagcagccccgct
gtccacagcctcccgaagtccccagaccgacctggctccaccagccccttcgctccatct
tcggcggacctacccagcatgcctgagccagccctgacctcccgtgcagacgtaatagag
gacagtgtgcacccgaccgaatcccaggaacctcgggaggtctccagcaagcttccaaag
tggcctgagccggtgaggcagctctggcactcactgcaggacaagttccaggatgagcct
gcaggcccagatggcatccagatggaggtggctctggtgagggcacagctggagaggagc
ggcaccaagagccaggacagggaactggccacgctggactgggctgagaggcagctggcc
cacgggggtccggctgaggtgcttctggctgctggcaaacacagacggccacgagaaaca
cgcatcatcgccgtgctgggtagggccggacaggggaagagccactgggcccgggccgtg
ggtcgggcctgggcccgcagccagctcccacagttcgactttgtcttccatatcccctgc
cactgcttggaccgccccggggacgcctaccgcctgcgtgacctgcttttgtctccacag
tcgtcatcgctggcagtggatgacgaggtcgttagccatgtgctgaagaggcccgagcgt
gtcctgctcattctggatggcttcgaggagcttgaagcccaggagggctttctgcccagc
gtgggtggccccggggcctcagagccctgctccctccgggggctgctggctggtctcttg
cagcgcaagctgctaccaggctgcaccctgctcctcatggcccggctgtggggccgcttg
ggccagagcctgagcaaggccgacgccctgtttgagctggctggtttctcagctgagcag
gcccaggcctacgtggcatgctactttgagcgttccggagcccctgagcagcgagagcaa
gccctgacgctcctgcgggaccggccgttcctgctcagtcactgccacagcccaaccctg
tgccgggtggcctgccagctagcgcaggcctctctcaagcggggagacagggacccgctg
ccctccacactcacgggactctacgtggagctgctgggccctgccatcagggctggcccc
ccgggcgccctgctgggactggccaggctggcctgggaatcgggcagaaggcaccagaga
acactgcgaaagggccacttcccatcagaggagctcaggacgtgggccgtggccaggggc
ttggtgcagccaggcccaggtgccacggaagctgaactggccttccccagcttcctcctg
cagtgctttctgggtgccatatggctagcgctgagctgcgaggtcaaggacaaggagctg
ccacaatacttggcgctgaccccgaggaagaagaggccctatgacaactggttggagggt
gtgccgcgcttcctcactgggctcctcttccagcctcgtgcccgctgcctggctgccctc
atgggttctgaggtggccgccgtggtggaccggaagcagaaggtgctcacaagatacctg
aagaggctgcagccagggacactgagggcgcggcggctgctggagctgctgcactgtgcc
cacgaggccgaggaggctggcatctggcagcatgtggtgcgggagctccccgcccgcctc
tccttcctgggcacccggctcacaccccctgacgtgcatgtgctggccagggctttggag
gcagctggccgagacttttccctggacctccgcagcactggcattgatccctccgggctg
gccagccttgtgggactcacccatgttggcagtttcaggtccaacctgagtgacacggtg
gggctgtgggagtccctgcagcagcgtggggagaccaagctactccatgcagccgaggag
aaattcaccattgagccctttcgagccaagtcgctgaaggatgtggaagacctgggcaac
cttgtgcagacccagaggatgagaagcgcctccgcagacgaaatcggagacctccccgct
gtccgggacctgaagaaactggagtttgcgttagggcccacctcgggcccccaagccttt
cctaagctggtgagggtcctcacagccttttcctcgcttcagcatctggacctggattct
ctgagcgagaacaagatcggggacgagggtgtgtcacagctcgcagccaccttcccacag
ctgaagtccctggagacactcaacctgtcacagaatagcatcactgatgtgggcgcctgc
aagctggccgaggccctgccctcacttgctgcgtccctcctcaggctgagcttgtataat
aattgcatctgtgacgtgggagccggaagcctggcccaagtgcttccagacatggtgtcc
ctgcgggtgatggacgtccagtacaacaagttcacggctgccggggcccagcagctcgcc
gccagcctgaggaagtgccctcacgtggagacgctggcgatgtggacgcctaccatccct
tttggtgtccaggaacacctgcagcagctggactcacgcatcagcctgagatga
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