Ochotona princeps (American pika): 101528071
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Entry
101528071 CDS
T07609
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04151
PI3K-Akt signaling pathway
opi04382
Cornified envelope formation
opi04510
Focal adhesion
opi04512
ECM-receptor interaction
opi04820
Cytoskeleton in muscle cells
opi04926
Relaxin signaling pathway
opi04933
AGE-RAGE signaling pathway in diabetic complications
opi04974
Protein digestion and absorption
opi05146
Amoebiasis
opi05165
Human papillomavirus infection
opi05200
Pathways in cancer
opi05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101528071 (COL4A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101528071 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101528071 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101528071 (COL4A5)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101528071 (COL4A5)
09154 Digestive system
04974 Protein digestion and absorption
101528071 (COL4A5)
09158 Development and regeneration
04382 Cornified envelope formation
101528071 (COL4A5)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101528071 (COL4A5)
09162 Cancer: specific types
05222 Small cell lung cancer
101528071 (COL4A5)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101528071 (COL4A5)
09174 Infectious disease: parasitic
05146 Amoebiasis
101528071 (COL4A5)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101528071 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
opi04147
]
101528071 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
opi00536
]
101528071 (COL4A5)
Exosome [BR:
opi04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101528071 (COL4A5)
Glycosaminoglycan binding proteins [BR:
opi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101528071 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101528071
NCBI-ProteinID:
XP_004590306
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Position
X
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AA seq
1673 aa
AA seq
DB search
MQLRGVRLAAGLFLLALSLWEQPAEAAACYGCSPGSKCDCSGIKGDKGERGFPGLEGHPG
LPGFPGPEGPPGPRGQKGDDGLPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQG
IPGCNGTKGERGFPGSPGFPGVEGPPGPPGIPGMKGEPGSIIMSSLPGPKGNPGYPGPPG
MQGPTGPTGIPGPIGPPGPPGLMGPPGPPGLPGPKGNMGLNFQGPKGEKGEQGLQGPPGP
PGQISEQKRPIDVEFQKGDQGLPGDRGPPGPPGIRGPPGPPGGVKGEKGEPGEPGKRGKP
GKDGETGQPGMPGQKGDTGPTGPPGLVIPRPGTGVTVGEKGNVGLPGLPGDKGERGFPGI
QGPPGLPGPPGTAIVGPPGPPGFPGERGQKGEEGPPGISIPGSPGLDGQPGPPGLPGPPG
PPGPHIPPSDELCEAGPPGPPGSPGDKGLQGEQGIKGEKGDTCFNCFGTGVSGPPGQPGL
PGLPGPPGSLGFPGQKGDKGYAGATGPKGLPGLPGAPGAPGFPGSKGEPGDILTFPGMKG
DKGELGAPGAPGLPGLPGTPGQDGLPGPPGPKGEPGGIAFKGERGPPGNPGLPGLPGTMG
PMGPAGFGPPGPIGEKGIQGVAGNPGQPGLPGPKGEPGQTITQPGKPGLPGVPGRDGEVG
LPGDPGLPGQPGLPGIPGSKGEPGIPGIGLPGPPGPKGFPGIPGPPGAPGTPGRTGLEGP
PGPPGFPGLKGEPGFALPGPPGQPGLPGFKGALGPKGDRGFPGPPGPPGRTGLDGLPGPK
GDVGPNGQPGPVGPPGLPGTGVQGPPGPPGIPGPVGQPGLHGIPGEKGDPGPPGFDMPGP
PGERGNPGLPGTPGPVGPPGPPGLPGKAGAIGFPGAKGEMGMMGPPGPPGPLGIPGRSGN
PGLKGDDGLHGQPGLPGPAGEKGSKGEPGLPGPPGPVDPNLLGSKGEKGEPGLPGIPGIS
GPKGYPGLPGDPGKPGLSGQPGLPGSPGPKGNPGLPGQPGLTGPPGLKGNLGDMGFPGPQ
GVKGLPGPPGVPGQPGSPGSPGQKGEKGDPGVSGIGFPGLPGPKGEPGLPGHPGEPGIKG
SVGVTGLPGLPGAPGAKGQPGLPGFPGTPGLPGPKGITGPPGSPGLPGEPGPVGGGGRPG
SPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGIPGSPGLPGLPGQKGDGGLPGLPGNPGL
PGPKGEPGFQGFPGVQGPPGPPGSPGPALEGPKGNPGPQGPPGRPGPTGFQGLPGPEGPR
GLPGNGGIKGERGNPGPPGQPGLPGLKGDQGPPGLPGNPGRPGLNGMKGDPGLPGVPGFP
GMKGPSGMPGSTGPEGEPGLTGPPGPPGLPGPSGQSIVIKGDAGPPGIPGQPGLKGPPGL
PGPQGLPGPVGPPGDPGRNGLPGFDGAGGRKGDPGLPGQPGSRGLDGPPGPDGLQGPPGP
PGTSSIAHGFLITRHSQTTDAPQCPQGTVHIYDGFSLLYVQGNKRAHGQDLGTAGSCLRR
FSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMEPLKGQSIEPFISRCAVCEAPAV
VIAVHSQTIQIPRCPQGWDSLWIGYSFMMHTSAGAEGSGQALASPGSCLEEFRSAPFIEC
HGRGTCNYYANSYSFWLATVDMSEMFSKPQSETLKAGDLRTRISRCQVCMKRT
NT seq
5022 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgcgtggagtccgcttggctgccggcttgttcttactggccctgagtctatgg
gagcagcctgcagaggctgcggcctgctatggatgttctccgggatcaaagtgtgactgc
agtggtataaaaggggataagggagaaagaggatttccaggtttagaaggtcatccaggt
ttacccggatttccaggtccggaaggacctcccggaccacgaggacaaaagggtgatgat
ggacttccagggccaccaggaccaaaaggaatccgaggtcctcctggactgcccggattt
ccaggaacaccaggtctacctggaatgccgggtcatgatggggccccaggacctcaaggt
attcctggatgcaatggaaccaagggagaacgtggctttccaggcagtcctggttttcct
ggtgtagagggtcctccaggacctcctgggatcccaggtatgaagggcgaaccaggtagt
ataattatgtcatcactgccaggaccaaagggtaatccaggctatccaggccctcctgga
atgcaaggcccaactggtcccactggaataccggggccaattggtcccccaggaccacca
ggtttgatgggccctcctggtcctccaggacttccaggaccaaagggaaatatggggtta
aatttccagggacccaaaggtgaaaagggtgagcaaggtcttcagggcccacctggacct
ccgggtcaaatcagtgaacagaaaagaccaattgatgtagaatttcaaaaaggagatcag
ggtcttcctggtgaccgaggacctcctggacctccagggatacgtggtcctccaggtcct
ccaggtggtgtgaaaggtgagaagggtgagcccggagaaccaggcaaaagaggtaaacct
ggcaaagatggagagactggccaaccaggcatgccaggacaaaaaggtgacactggccca
acaggaccacctggacttgtaattcctagacctggaacaggtgtaactgtaggagaaaaa
ggaaatgttggattgcctggcttgcctggagataaaggagagcgaggatttcctggaata
cagggtccaccaggacttcctggacctccagggactgcgattgtaggtcctcctggaccc
cctgggtttccgggagaaaggggtcagaaaggtgaagaaggtccacctggaatctctatt
cctggatctcccgggcttgatggacagccagggcctcctggccttccggggcctcctggg
cctcctggccctcacatacctcctagcgatgagctgtgtgaagcaggccctccgggccct
ccaggatcacctggtgataaaggactccaaggagaacaaggaatcaaaggtgaaaaaggt
gatacctgcttcaactgttttggcactggtgtttcaggccctccaggtcagcctggtctg
ccaggtctcccaggtcctccaggatctcttggtttcccaggacagaagggtgataaagga
tatgctggtgcaactggacccaaaggattacctggcttgccaggagctccaggtgctcca
ggctttcctggaagtaaaggtgaacctggtgacatcctcacttttccaggaatgaagggt
gacaaaggagagttgggtgcccctggcgctccaggacttcctggcttacctggcacccct
ggacaagatgggttgccaggacctcctggccccaaaggagagcctggtggaattgctttt
aagggtgaaagaggtccccctgggaacccaggtttgccaggtctcccaggaactatggga
cccatgggccctgctggctttggccctccaggcccaataggtgaaaaaggcatacaaggt
gtggcaggaaacccaggccagccaggactgccaggtcctaaaggtgagccaggtcaaacc
atcactcagccagggaagcctggcctgcctggtgttccaggcagagacggggaagtaggc
cttccaggtgaccctggacttccaggccaaccaggcttaccaggcatacctggtagcaaa
ggagaaccaggtatccctggaattggtcttcctggaccacctggtcccaaaggttttcct
ggaattccaggacctccaggagcacctgggacacctggaagaactggtctagaaggccct
cctggtccaccaggttttccgggactgaagggagaaccaggatttgcattacctggacca
cctggacaaccaggactcccaggtttcaaaggagcacttggtccaaaaggtgatcgtggc
ttcccaggacctccgggtcctccaggacgcactggcttggatgggttacctggaccaaaa
ggtgatgttggaccaaatggacaacctgggccagtgggacctcctgggcttccaggaaca
ggtgttcagggaccaccaggaccaccaggaattcctggaccagtaggtcaacctggtcta
catggaataccaggagagaagggagatccgggacctcctgggtttgatatgccaggacct
cccggtgaaagaggcaatccagggctcccaggaacacctggtcctgtgggacctccagga
ccaccagggctcccaggaaaagcaggtgccattggatttccaggtgccaaaggtgaaatg
ggtatgatgggacctccaggcccaccaggacctctggggattcctggaaggagtggcaat
cctggtcttaaaggggatgatggcttacacggtcagccaggacttcctggtccagcagga
gaaaagggcagcaaaggagagcctggccttccaggacctcctggaccagtagatccaaat
ctgctgggctcaaaaggagagaagggggaacctggcttaccaggtattcctggaatttca
gggccaaaaggttacccgggtctgcctggtgacccagggaaacctggactgagtggacag
cctggattaccaggatctccaggtcccaagggtaaccctggtcttcctgggcagccagga
cttacaggaccacccggacttaaaggaaacttaggtgatatgggtttcccaggtcctcaa
ggtgtgaaagggctccctggacctcctggagttcctggtcaacctgggtccccaggatca
cctgggcagaaaggagaaaagggtgatcctggtgtttcaggcattggttttccaggtctt
cctggcccaaagggtgaacctggtctgcctggacacccaggagagccaggcatcaaaggt
tctgtgggagttactggtttgcctgggttaccaggggctcctggagcaaaaggacaacca
ggccttcctggattcccaggaaccccaggccttcctggaccaaaaggtatcactggccct
ccaggaagccctggcctcccaggagaacccggtcctgtaggtggtggaggtcgtcctggg
tcaccagggcctccaggtgaaaaaggcaagccaggtcaagatggtattcctggaccagct
ggacagaagggtgaaccaggtcaacctggttttggaatcccaggatcccctggactccca
ggacttcctggtcaaaagggtgatggaggattacctggcttgccaggaaaccctggcctt
ccaggtccaaagggtgaaccaggctttcagggtttccctggtgtgcaaggtcccccaggc
cctcctggatctccaggtccagctctggaaggccccaaaggaaaccctgggcctcaaggt
cctcctgggagaccaggtcctacaggttttcaaggtctaccaggtccagaagggccccga
ggactccctggaaatggaggtattaaaggagagaggggaaacccaggcccacctgggcaa
cctggcttgcctggtttgaaaggagaccaaggaccaccaggactcccgggtaatccaggc
agacctggcctcaatgggatgaaaggggatcctggcctccctggtgttccaggattccca
ggcatgaaaggacccagtggaatgcctggttcaactggccctgagggggaaccaggactt
actggaccaccaggtcctcctggattacccggtccttcagggcagagtattgtaatcaaa
ggagatgctggtcctccaggaatccctggccagcctgggttaaaaggtccaccaggatta
ccaggacctcagggcttaccaggtccagttggccctccaggagatccaggacgcaatgga
ctccctggctttgatggtgcaggaggacgcaaaggagacccaggtctgccagggcagcca
ggttcccgtggtttggatggaccccctgggccagatggattacaaggaccgccaggaccc
cctggaacctcctctattgctcatggattcctcatcacacgccatagccaaacaacagat
gcaccacaatgtccacaaggaacagtccacatctatgatggcttctctctcctgtatgta
caaggaaataaaagagctcacggtcaagacttgggaacggctggcagctgccttcgtcgc
ttcagtaccatgcctttcatgttctgcaacatcaataatgtttgtaatttcgcttcaaga
aatgactattcttactggctctccactccagaacctatgccaatgagcatggaacccctg
aaaggccaaagcattgagccgttcattagtcgatgtgcagtatgcgaagccccagctgtg
gtgatcgcagttcacagtcagaccatccagattccccgctgtcctcaaggatgggattct
ctgtggattggttattctttcatgatgcatacaagtgctggggcagagggctcaggtcaa
gctctggcctcccctggttcctgcttggaagagtttcgttcagctcccttcatcgaatgt
catgggcggggtacctgtaactactatgccaactcctacagtttttggttggcaaccgta
gacatgtcagaaatgttcagtaaacctcagtcagaaacactgaaagcaggagacttgagg
acacgtattagccgatgtcaagtgtgcatgaagagaacataa
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