Ochotona princeps (American pika): 101528414
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Entry
101528414 CDS
T07609
Symbol
SMC1B
Name
(RefSeq) structural maintenance of chromosomes protein 1B isoform X1
KO
K06636
structural maintenance of chromosome 1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04110
Cell cycle
opi04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
101528414 (SMC1B)
04114 Oocyte meiosis
101528414 (SMC1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101528414 (SMC1B)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
101528414 (SMC1B)
Meiosis-specific proteins
Cohesin complex and associated proteins
101528414 (SMC1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_23
AAA_15
AAA_21
AAA_29
ATG16
Ca_chan_IQ
ABC_tran
Motif
Other DBs
NCBI-GeneID:
101528414
NCBI-ProteinID:
XP_004589484
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All DBs
Position
4:complement(3189775..3237032)
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AA seq
1235 aa
AA seq
DB search
MGHLELLLVENFKSWRGRQLIGPFKRFTCIIGPNGSGKSNVMDALSFVMGEKTANLRVKN
IQELIHGAHIGRPVSSSASVKIVYVEAGGEEKTFARIIRGGCSEFRFNDSPVSRSAYLAE
LEKIGIVVKARNCLVFQGTVESISMKKPKERTHFFEEISTSGELIGEYEEKKRKLQKAEE
DAQFNFNKKKNVAAERKHAKLEKEEAERYQSLLEELRLNKKQLQLSRLYHNERKARFLTV
ELEHVSRDLSATKESLSRHEDIVKAKKKEHGALTRQLQQTEKELKALEALLSQKRPQYIK
AKENTSHHLQKLDMARKCIKDSERQRARQEDDIRALEAQLVDLDGAWRSFEKQIEEEILR
KGRDIELEASQLERYKELKEQVRKKVAIMTQQLEKLQWAQRAEEERLAFEKRRHGDVQGN
LKQVKEQIEDHKKRVETLEEYAETCTDCLEDKKQQEEMLSDDIAKTKSRMSEVNEELNLI
RDELQDAGIDTHEGKRQQRRAEVLEHLKRLYPDSVFGRLLDLCHPIHKKYQLAVTKLFGR
YMVAIVVTSEKVAKDCIRFLKEERAEPETFLALDYLEIKPINERLREIKGCKMVIDVIKT
QFPQLKRVIQFVCGNGLVCETVEEARHIAFGGPERRKTVALDGTLFLKSGVISGGSSDLR
HKSRYWDEKELKTLRDRRALLLQELKDLMKALRKETDLKQIQTLIQGTHMRLKYSQTELD
MIKKKHLAAFYREQSQLQSELLNIESQCTMLDQGIKEQQRRVEEFRAKINKVEDDIFLHF
CEEIGVENIREFENKHVKQQQEIDQKRLEFEKQKTRLNVQLEYSRNQLKKKLTKISTLKE
TLQKDTEDIGILTEAEENCLQMVNELMEKRQQLKDVCVTQSSSAEKVQTQIEEERKKFLA
IDREVGKLQKKVVIIQSALEQKRLEKHNVLLDCKVQDIDIVLLLGSLDDIIDLELGTDTE
STQATADIYEKEEAIEIDYSSLRADLKALQSDEEVEAHLRLLLQQVASQEDVLLKTAAPN
LRALENLKTVRDKFQESTDAFEASRREARMCRQEFEQVKKRRCDLFSRCFEHVSISIDQI
YKKLCRNASAQAFLSPENPEEPYLEGISYNCVAPGKRFMPMDNLSGGEKCVAALALLFAV
HSFRPAPFFVLDEVDAALDNTNIGKVASYIRQQTQEQFQMVIISLKEELYSKADALIGIY
PEHDDCMFSRILTLDLSQYPDTEDQEGSSRYDESR
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atgggccacctggagctgctgctcgtggagaacttcaagtcgtggcggggccgccagctc
atcggccccttcaagaggttcacctgtatcatcggccccaacggctccggaaagtctaat
gtgatggatgcactcagttttgtaatgggagagaagacggctaatttaagagtgaagaat
attcaggaacttattcacggagcgcatatcggaaggcctgtttcttcttcagccagtgtg
aaaattgtgtatgtggaggcaggaggggaagagaagacgtttgcaaggattattcgaggc
gggtgttcagaattccgcttcaatgacagtcctgtgagtcgctctgcttacttggccgag
ttggagaagatcggcatcgtggtcaaggcacgaaattgtcttgtttttcagggaactgtg
gagtcaatttcaatgaaaaaacccaaagaacgaactcatttttttgaggaaatcagcact
tcaggggagctgatcggggagtatgaggaaaagaaaagaaagctgcaaaaagctgaagag
gatgcacagtttaattttaataagaaaaaaaatgtagctgctgagcgcaaacatgcaaag
cttgagaaagaagaggcagagcgctaccagagtctcctggaagaactgagattgaataag
aagcagctgcagctctcccggctgtaccacaacgagaggaaggcgcgctttctgaccgtt
gagttggaacacgtgagtagggatctgagcgccaccaaagagtccctttctcgtcacgaa
gacatagttaaagccaagaaaaaggagcatggagcactgaccagacaactgcagcagaca
gaaaaagagttaaaagcccttgaagcactgctgagtcagaagaggcctcagtacatcaaa
gccaaagagaacacttctcaccacctccagaagctggacatggccaggaagtgcatcaag
gacagcgagaggcagcgtgccaggcaggaggatgacatacgcgccctggaggcacagctg
gtggacttggatggcgcctggagaagcttcgagaaacagattgaggaggaaatcttacgc
aaagggcgagacattgaactggaagccagtcagctggagcgttataaggaacttaaggaa
caagtaaggaagaaagtagctataatgactcagcagctggagaaactgcagtgggcgcag
cgggcggaggaggagaggctggcgttcgagaagaggcggcatggggacgttcaggggaat
ctaaaacaagtaaaagaacaaatagaagatcataaaaaacgagtagagacgttggaggag
tacgccgagacatgcactgactgcctggaagacaaaaaacaacaggaagaaatgctgtca
gacgacatcgcaaaaaccaagtccaggatgtctgaagtgaatgaagaactgaacctcatc
agagatgaattgcaggacgctgggatagatacccacgaggggaagcgtcagcaaaggaga
gcggaagttctggaacaccttaaaaggctctacccagattccgtgtttggaagactgctc
gacctgtgtcatcctattcataagaagtaccagcttgctgttactaagctttttggccgg
tacatggtcgccattgttgtcacctctgagaaggtagcaaaagattgtattcggtttctg
aaagaggaacgagctgagcccgaaacgttcctggctctggattaccttgaaatcaagcca
atcaatgagagattgagagagattaaaggctgtaaaatggtgattgatgtcataaagacc
cagtttccccagctgaagagagtgatccagtttgtgtgtgggaacggcctcgtgtgcgag
acggtggaggaggcccggcacatcgccttcggtgggcctgaaagacggaaaactgtagct
cttgatggaacactgtttctaaaatctggggtgatctctggaggatcaagtgacttacga
cataagtcaagatactgggatgagaaggagttaaagactctgagagacagaagagcactg
cttctgcaggagctgaaggatttaatgaaggcactccgcaaggaaactgatttgaaacaa
atacaaactctaatacaaggaactcacatgcgactaaaatattcacaaactgaattggat
atgattaaaaagaagcatcttgctgccttttaccgggagcagtctcagctgcagagtgaa
cttctcaacattgagtctcagtgcactatgttggaccaaggcatcaaagagcaacaacga
agagtcgaagaattccgagctaagataaataaggtggaagatgatattttcctgcacttc
tgtgaagaaattggagtagaaaatattcgtgaatttgagaacaaacatgttaaacagcaa
caagaaattgatcaaaaaaggttagaatttgaaaaacaaaaaactcgacttaatgttcag
cttgaatatagtcgcaatcagcttaagaagaaactgactaagatcagtacattaaaagaa
actctccagaaagatacggaagacattggtatcctgacagaggctgaagaaaactgcctt
cagatggtgaatgaactgatggagaagcggcagcagctgaaggatgtgtgtgtcactcag
agctccagtgcggagaaagttcagacgcagattgaagaggaacgcaagaagtttttggct
attgatagggaagtggggaagctgcagaagaaagttgtcatcatccagagtgctctggag
cagaaacggctggagaagcacaacgtgctgctggactgcaaagtccaggacatcgacatc
gtcctgctgttggggtcgctggatgacatcattgacttggagctgggcactgacactgag
agtacccaggcaacggctgacatctacgagaaggaggaagccatcgagatagactacagc
tccctgcgggcggacctgaaggccctgcagtctgatgaagaggtcgaggcccaccttagg
ctcctgctgcagcaggtggcgtcccaggaggacgtcctgttgaagacagccgcccccaac
ctgcgagccctggagaacctgaagactgtccgcgacaaattccaggagtccacggacgct
tttgaggccagcagaagggaggcgcgcatgtgcaggcaggagtttgagcaagtgaagaag
aggcggtgcgacctcttcagcaggtgcttcgagcacgtctccatctccatcgaccagatc
tacaagaagctctgcaggaacgccagtgcacaggcatttcttagtccagagaaccctgaa
gaaccctacttagaaggaattagctacaactgcgtggccccaggcaaacgcttcatgccc
atggacaatctgtcggggggagaaaagtgtgtggcagccctggctctcctctttgcagtt
cacagtttccggcctgctccgttctttgtcttagatgaagtggatgcagccctggacaat
accaacatcggcaaagtggccagctacatcaggcagcagacacaggagcagttccagatg
gtcatcatctccctcaaggaggagctctactccaaggccgacgccctgataggcatctat
ccggagcacgacgactgcatgttcagccgcattttgacccttgatctttcgcagtacccc
gacacggaggaccaggaaggcagcagcagatacgacgagtcccgctag
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