Ochotona princeps (American pika): 101528534
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Entry
101528534 CDS
T07609
Symbol
SPTBN1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04517
IgSF CAM signaling
opi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
101528534 (SPTBN1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101528534 (SPTBN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
opi04812
]
101528534 (SPTBN1)
Cytoskeleton proteins [BR:
opi04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
101528534 (SPTBN1)
Intermediate filaments
Intermediate filament-binding proteins
101528534 (SPTBN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SOS1_NGEF_PH
PH_11
Motif
Other DBs
NCBI-GeneID:
101528534
NCBI-ProteinID:
XP_004580197
LinkDB
All DBs
Position
2:complement(53709556..53876842)
Genome browser
AA seq
2364 aa
AA seq
DB search
MTTTVATDYDNIEIQQQYSDVNNRWDVDDWDNENSSARLFERSRIKALADEREAVQKKTF
TKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHCLENVDKAL
QFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEKKSAKDALL
LWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNL
AEQHLGLTKLLDPEDISVDHPDEKSIITYVVTYYHYFSKMKALAVEGKRIGKVLDNAIET
EKMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYRTVEKPPKFTEKG
NLEVLLFTIQSKMRANNQKVYMPREGKLISDINKAWERLEKAEHERELALRNELIRQEKL
EQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIETDIAAYEERVQA
VVAVARELEAENYHDIKRITARKDNVIRLWEYLLELLRARRQRLEMNLGLQKIFQEMLYI
MDWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVEADIGIQAERVRGVNASAQKFATDGEG
YKPCDPQVIRDRVAHMEFCYQELCQLAAERRARLEESRRLWKFFWEMAEEEGWIREKEKI
LSSDDYGKDLTSVMRLLSKHRAFEDEMSGRSGHFEQAIKEGEDMIAEEHFGSEKIRERIT
YIREQWANLEQLSAIRKKRLEEALLLHQFQADADDIDAWMLDILKIVSSNEVGHDEYSTQ
SLVKKHKDVAEEIANYRPTIDSLHEQASALPQEHAESPDVRGRLSGMEERYKEVAELTRL
RKQALQDTLALYKMFSEADACELWIDEKEQWLNNMQIPEKLEDLEVIQHRFESLEPEMNN
QASRVAVVNQIARQLMHSGHPSEKEIKAQQDKLNTRWSQFRELVDRKKDALLSALSIQNY
HLECNETKSWIREKTKVIESTQDLGNDLAGVMALQRKLTGMERDLVAIEAKLSDLQKEAE
KLESEHPDQAQAILSRLAEISDVWEEMKTTLKNREASLGEASKLQQFLRDLDDFQSWLSR
TQTAIASEDMPNTLTEAEKLLTQHENIKNEIDNYEEDYQKMRDMGEMVTQGQTDAQYMFL
RQRLQALDTGWNELHKMWENRQNLLSQSHAYQQFLRDTKQAEAFLNNQEYVLAHTEMPTT
LEGAEAAIKKQEDFMTTMDANEEKINAVVETGRRLVSDGNINSDRIQEKVDSIDDRHRKN
REAASELLMRLKDNRDLQKFLQDCQELSLWINEKMLTAQDMSYDEARNLHSKWLKHQAFM
AELASNKEWLDKIEKEGMQLISEKPETEAVVKEKLTGLHKMWEVLESTTQTKAQRLFDAN
KAELFTQSCADLDKWLHGLESQIQSDDYGKDLTSVNILLKKQQMLENQMEVRKKEIEELQ
SQAQALSQEGKSTDEVDSKRLTVQTKFMELLEPLNERKHNLLASKEIHQFNRDVEDEILW
VGERMPLATSTDHGHNLQTVQLLIKKNQTLQKEIQGHQPRIDDIFERSQNIVTDSSSLNA
EAIRQRLADLKQLWGQLIEETEKRHRRLEEAHRAQQYYFDAAEAEAWMSEQELYMMSEEK
AKDEQSAVSMLKKHQILEQAVEDYAETVHQLSKTSRALVADSHPESERISMRQSKVDKLY
AGLKDLAEERRGKLDERHRLFQLNREVDDLEQWIAEREVVAGSHELGQDYEHVTMLQERF
REFARDTGNIGQERVDTVNHMADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQI
LAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQV
RQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKALLDACEGRRVRLVDTGDKFRFFSMV
RDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR
KHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRLILEVHQFSRDASVAEAWLLGQEPYL
SSREIGQSVDEVEKLIKRHEAFEKSAATWDERFSALERLTTLELLEVRRQQEEEERKRRP
PSPEPSTKVSEETESQQQWDASKGEQVSQNGLPAEQGSPRMADVADMSDMVNGAAEQRTS
SKESSPVPSPTSDRKAKTSFPAQSAATLPARTQETPSAQMEGFLNRKHEWEAHNKKASSR
SWHNVYCVINNQEMGFYKDAKTAASGIPYHSELPVSLKEALCEVALDYKKKKHVFKLRLN
DGNEYLFQAKDDEEMNAWIQAISSAISSDKHEVSASTQSTPASSRAQTLPTSVVTITSES
SPGKREKDKEKDKEKRFSLFGKKK
NT seq
7095 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccacggtagccacagactacgacaacattgagatccagcagcagtacagcgac
gtcaacaaccgctgggacgtggatgactgggacaatgagaacagttccgcacgtctcttt
gagcgatcccgcatcaaggctctggccgatgagcgtgaggccgtgcagaagaagaccttc
accaagtgggtcaactcccacctggcccgagtgtcctgccgcatcacagatctgtacact
gaccttcgggatggacggatgctcatcaagttgctggaagtcctctctggagagaggctg
ccaaaacccacgaagggccggatgcgcatccactgcctggagaacgtggacaaggctctg
cagttcctgaaggagcagagagtccatcttgagaacatggggtcccatgacatcgtggat
gggaaccaccggctgaccctcggcctcatctggaccatcatcctgcgcttccagatccag
gatatcagtgtcgaaactgaggacaacaaagagaaaaagtctgccaaggacgctttgctg
ttgtggtgccagatgaagacagctgggtaccccaacgtcaacattcataatttcaccact
agctggagggatggcatggccttcaatgcactgatacacaaacaccggcccgacctgata
gattttgacaaactgaagaaatccaatgcacactacaatcttcagaatgcatttaacctg
gcagagcagcacctgggcctcactaaattgttggaccctgaagatatcagcgtggaccac
cctgatgagaagtccatcatcacctatgtggtgacttactaccactacttctctaagatg
aaggccttggctgtggaaggaaaacggatcggaaaggtgcttgataatgctattgaaaca
gaaaaaatgattgagaagtatgaatcacttgcctctgacctcctggagtggattgaacaa
accatcattattctgaacaaccgcaaatttgccaactcactggtcggggtgcaacagcag
ctccaggcattcaacacttaccgcactgtggagaaaccacccaaatttactgagaagggg
aacttggaggtgctactcttcacgattcagagcaagatgagggccaacaaccagaaggtc
tacatgccccgggaggggaagctcatctctgacattaacaaggcctgggaaagactggaa
aaagcagaacacgagagagaactggccctgcggaatgagctcatcagacaggagaaactg
gaacagctggcccgcagattcgatcgcaaggcagccatgcgggagacgtggctgagcgag
aaccagcgccttgtgtcccaggacaactttggatttgaccttcctgccgttgaggccgcc
acgaaaaagcatgaagccattgagacagatattgccgcatatgaggagcgtgtgcaggcc
gtggtggctgtggccagggagctggaggctgagaactaccatgacatcaagcgcatcaca
gccaggaaggacaatgtcatccggctctgggaatacctgctggaactgctcagagcccgg
aggcaacgtctggagatgaacctggggctgcagaaaatattccaggaaatgctgtacatt
atggactggatggatgaaatgaaggtgctattattatctcaagactacggcaaacacttg
cttggcgtggaagacctgttacagaagcatgccctggtggaggcagacatcggcatccag
gcagagcgcgtgagaggggtcaacgcctctgcccagaagtttgcaaccgatggagaaggt
tacaagccctgcgacccacaggtgatccgagaccgcgtggcccacatggagttctgctat
caagagctgtgccagttggcagccgagcgccgggcacgcctggaagagtcccgccgcctc
tggaagttcttctgggagatggcagaagaggaaggctggatacgagagaaggagaagatc
ttgtcttccgacgactacgggaaggacctgaccagcgtcatgcgcctcctcagtaagcat
cgggcatttgaggatgagatgagtggccgcagcggccactttgagcaggccatcaaggag
ggtgaagacatgatcgctgaggagcacttcgggtccgagaagatccgcgagaggatcaca
tacatccgggagcagtgggccaacctggagcagctgtcggccatccggaagaagcgcctg
gaggaggccttactgctgcaccagttccaggcggatgccgatgacattgacgcctggatg
ctggacatcctcaagatcgtctccagcaatgaagtgggccacgacgagtactccacccag
tccctagtcaagaagcacaaggacgtggcggaggagatcgccaactacaggcccaccatc
gactcactgcacgagcaggccagcgccctcccccaggagcatgccgagtctccggacgtg
cggggcaggctctcgggcatggaggagcgctacaaggaggtggcggagctgacacggctg
aggaagcaggcactgcaggacaccctggccctgtacaagatgttcagtgaggctgacgcc
tgcgagctctggatcgatgagaaagagcagtggctcaacaacatgcaaatcccagagaag
ctggaagacctggaggtcatccagcaccgatttgagagcctagaaccagaaatgaacaac
caggcttcccgggttgcagtggtaaaccagattgcacgccagctgatgcacagtggccac
ccgagtgagaaggagatcaaagcccagcaggacaaactcaacacaaggtggagtcagttc
agagagctggttgacaggaagaaggacgccctgctgtctgccctgagcatccagaactac
caccttgagtgcaatgagaccaaatcctggattcgagaaaagaccaaggtcatcgagtcc
acccaggacctgggcaacgacctggccggtgtcatggccctgcagcggaagctgacgggc
atggaacgggacttggtggccatcgaggcaaagctgagtgacctgcagaaggaggcggag
aagcttgagtcggagcaccctgaccaggcccaggctatcctgtctcggttggccgagatc
agcgacgtatgggaggagatgaagaccaccctgaagaaccgggaggcctccctgggagag
gccagcaaactacagcagttcctgcgggacttggatgacttccagtcctggctctccagg
acccagacggccatcgcctcggaagacatgcccaacaccttgaccgaggccgagaagctg
ctcacccagcacgagaacatcaaaaatgagatcgacaactatgaggaggactaccagaag
atgagggacatgggcgagatggtcacccagggacagacggacgcccagtacatgtttctg
cggcagcggctgcaggccctggacactggatggaacgagctccataaaatgtgggagaac
cggcagaatctcctatcccagtctcacgcctaccagcagttccttagggacacaaagcaa
gccgaagccttccttaacaaccaggaatatgtgttggctcataccgaaatgcccaccacc
ttggaaggagctgaagcagctattaaaaagcaagaggacttcatgactaccatggacgcc
aacgaggagaagatcaatgctgttgtggagaccggccggaggctggtgagcgatgggaac
atcaactcggatcgcatccaagagaaggtggactctatcgatgacagacacaggaagaat
cgtgaggcagccagtgaactcctgatgagattgaaggacaacagggaccttcagaagttc
ctgcaggattgtcaagagctatccctctggatcaatgaaaagatgcttacagcccaggat
atgtcatatgatgaagccaggaatctgcatagcaaatggttaaaacatcaagcatttatg
gcagaacttgcatccaacaaagaatggcttgacaaaattgagaaggaaggaatgcagctc
atttcagaaaagcccgagacagaagccgtggtaaaggagaagctcacaggtctgcacaaa
atgtgggaagtccttgaatccactacccagaccaaggcccagcggctcttcgatgcaaac
aaggctgaactcttcacccagagctgtgcagatctcgacaaatggctgcatggcttggag
agccagatccagtccgacgactatggcaaggacctgaccagtgtcaacatcctgctgaaa
aagcaacagatgctggagaaccagatggaagtgcggaagaaggagatcgaggaacttcag
agccaggctcaggccctgagtcaggagggcaagagcaccgacgaggtggacagcaagcgc
ctcaccgtgcagacgaagttcatggagttgctggagcccttgaatgagaggaagcataat
ctgctggcttccaaagagatccatcagttcaacagggacgtggaagatgagattctgtgg
gttggcgagaggatgcctttggcaacctccacggatcatggccacaacctccagaccgtg
cagctcctaatcaagaaaaaccagaccctccagaaagaaatccagggacaccagcctcgc
attgatgacatctttgagcggagccagaacattgtcaccgatagcagcagcctcaatgcg
gaggccatccggcaacggctcgctgacctgaagcagctgtggggccagctcatcgaggag
accgagaagcgccacaggcggctggaggaagcccacagggcccagcagtactacttcgat
gcggctgaggctgaggcatggatgagcgagcaggagctatacatgatgtctgaggagaag
gccaaggatgagcagagcgctgtctccatgttgaaaaaacaccagattctggagcaagct
gtggaggactatgcagagacggtacatcagctctccaaaaccagccgggccctggtggcc
gacagccatcctgaaagcgagcgcattagcatgcggcagtccaaagtagacaagctgtat
gctggactgaaggacctcgccgaagaaaggagaggcaagctggatgagaggcacaggtta
ttccagctgaaccgggaggtggacgacctggagcagtggattgctgagagggaggtggtc
gcagggtcccatgagctggggcaggactacgagcacgtgacgatgttacaagaaagattt
cgggaatttgcccgagacacgggcaacattgggcaggagcgcgtggacacagtcaatcac
atggccgatgagcttatcaactcgggacattcagatgcagccaccatcgctgagtggaag
gacggcctcaatgaagcctgggctgacctcctggagctcatcgacacgagaacacagatc
ctggctgcctcctatgaactgcataagttttaccatgatgccaaggagatctttggacgc
attcaggacaaacacaagaaactcccggaggagctcggtcgtgatcagaacacagtggag
accttgcagagaatgcacaccacgtttgagcatgacatccaggccctgggcactcaggtc
aggcagctgcaggaggacgcagcccgcctgcaggcggcctatgctggtgacaaggcagat
gacatccagaagcgtgagaacgaagtcctggaggcctggaaggccctgctggatgcctgc
gagggccgcagggtgcggctggtggacacaggggacaagttccgcttcttcagcatggtg
cgtgacctcatgctctggatggaggatgtcattcggcaaattgaggcccaagagaagccc
agggatgtgtcatccgttgaactgttaatgaacaatcatcaaggtatcaaagctgaaatt
gatgctcgtaatgacagcttcacaacctgcattgaacttgggaaatccctgttggcgagg
aaacactacgcctctgaggagatcaaggaaaagttactgcagttgacggaaaagagaaaa
gaaatgatcgacaagtgggaagaccgatgggagtggttaagactgatcttggaggtccat
cagttctcaagggatgccagcgtggccgaggcctggctcctgggacaggagccctacctg
tccagccgagaaataggccagagcgtggacgaggtggagaagctcatcaagcgccacgag
gcatttgagaagtctgcagccacctgggacgagaggttctccgccctggagcggctgacg
acgttggagttactggaagtgcgcagacagcaagaggaggaagagaggaagaggcggccg
ccttctcctgagccaagcacaaaggtttcagaggagactgagtcccagcaacagtgggat
gcttccaaaggagaacaagtgtcccagaatggtttgccggctgaacagggatctccacgg
atggcagatgtggcagacatgagcgacatggtcaatggcgctgccgagcagaggacgagt
tccaaggagtccagccccgtcccctcccccacctctgatcgcaaagccaagaccagcttc
ccggcccagagtgccgccaccttgccagccagaacccaagagacgccctcagcccagatg
gaaggtttcctgaatcggaagcacgagtgggaggcccacaacaaaaaagcctcgagcagg
tcctggcacaatgtctattgtgtcatcaacaaccaagagatgggtttctacaaagacgcc
aagactgcagcatcaggaattccctaccacagcgagctgcccgtgagtttgaaggaggcc
ttatgcgaagtggccctggattacaagaagaagaaacatgtattcaagctccggctaaat
gacggcaatgagtacctcttccaagccaaagatgatgaggaaatgaatgcctggatccag
gccatctcatcggccatctcctcggacaaacacgaagtgtccgccagcacacagagcacg
ccggcgtccagccgagcgcagaccttgcccaccagcgttgtcaccatcaccagcgagtcc
agtcccggcaagcgggagaaggacaaagaaaaagacaaagagaagcggttcagccttttc
ggcaaaaagaaatga
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integrated database retrieval system
