Ochotona princeps (American pika): 101528587
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Entry
101528587 CDS
T07609
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03030
DNA replication
opi03420
Nucleotide excision repair
opi03430
Mismatch repair
opi03440
Homologous recombination
opi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101528587 (RPA1)
03420 Nucleotide excision repair
101528587 (RPA1)
03430 Mismatch repair
101528587 (RPA1)
03440 Homologous recombination
101528587 (RPA1)
03460 Fanconi anemia pathway
101528587 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101528587 (RPA1)
03032 DNA replication proteins [BR:
opi03032
]
101528587 (RPA1)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101528587 (RPA1)
Transcription factors [BR:
opi03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
101528587 (RPA1)
DNA replication proteins [BR:
opi03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
101528587 (RPA1)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
101528587 (RPA1)
MMR (mismatch excision repair)
101528587 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
101528587 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep-A_N
Rep_fac-A_C
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
101528587
NCBI-ProteinID:
XP_012784888
LinkDB
All DBs
Position
19:complement(16010547..16051108)
Genome browser
AA seq
538 aa
AA seq
DB search
MQQGDTSIKPILQVINIRPIMTGNSPPRYRLLMSDGLNSLSSFMLATQLNPLVEEERLSS
NCICQINRFLVNTLKDGRRVVILMELEVLKSADEVGVKIGNPVPYNEVHGQQQTVPAPAP
AANPPASKPQQQNGSSGMGPPISKSFGASKTFGKAGGGNLMSTSGGTQSRVVPIASLTPY
QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNEQVDKFFPLIEVNK
VYYFSKGTLKIANKQFTAVKNDYEMTFNNDTSVMPCDDGNHLPTVQFTFTGIDALESKSK
DSLVDIIGICKSYEDATKITVKSNNREVAKRDIYLMDMSGKVVTATLWGEDADRFDGSRQ
PVLAIKGARVSDFGGRSLSVLSSSTVIMNPDIPEAYKLRGWFDSEGQALNGVSISDLKSG
GTMGSNTNWKTLYEVKSENLGQGDKADYFSSVATVVYLRKENCMYQACPNQDCNKKVIDQ
QNGLYRCEKCDSEFPNFKYRMILSDESRIKATVMDVKPVDYREHARRLIMNIRKNAVM
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagggggacacgtccatcaagcccatccttcaggtcattaacatccgccccatt
atgacggggaacagcccaccccgttatcgactgctcatgagtgatggattgaacagcctg
tcgtctttcatgttggccacacagttgaaccctcttgttgaggaagaacggttgtctagc
aactgtatttgccagattaaccgattccttgttaacacgctgaaagatggaaggagagtg
gttattttgatggaactagaagttctgaaatcagcagatgaggttggagtaaagattggc
aacccagtgccctataatgaagtacacggtcagcagcagacagttccggctccggctccg
gcagccaatcccccggccagcaagccccagcaacagaacgggagctcaggaatgggtccc
cccatatctaagtcttttggtgcctccaagacctttgggaaagccggaggtggcaatctg
atgagcacttccggaggaacacagtccagagtggtccccatcgccagcctcaccccctac
cagtccaagtggacgatttgtgctcgtgtcaccaacaaaagccagatcaggacctggagc
aattccagaggggaagggaagctgttctccttagagctggttgatgaaagtggtgaaatc
agagctactgctttcaacgagcaagtggacaaattctttcctcttattgaagtgaacaag
gtgtattatttctcgaaaggcaccctgaagatcgctaacaaacagttcactgctgttaag
aatgactacgagatgaccttcaataatgacacgagtgtgatgccctgtgacgatgggaac
catctccccacagtccagtttaccttcacggggatcgacgccctggagagcaagtctaag
gactcactcgtggacataattgggatctgcaagagctacgaggatgccactaaaatcacc
gtgaagtccaacaacagagaagttgccaagagagatatctatctgatggacatgtcaggg
aaagtggtgactgctactctctggggagaagatgctgatagattcgatggctcgagacag
cccgtgctagccatcaaaggagcccgggtttctgattttggtggccggagcctgtccgtc
ctgtcttcaagcactgtcattatgaatcctgacatcccagaggcctataagcttcgtggc
tggttcgactcagaagggcaagccttgaatggtgtttccatctctgacctcaagagtgga
ggaacaatggggagcaacaccaactggaagaccttgtacgaagtaaaatcggagaacctg
ggccaaggggacaaggccgactacttcagctcagtggccaccgtggtgtatttgcgcaag
gagaactgtatgtaccaggcctgccctaaccaggactgcaacaagaaagtgatcgatcag
cagaatgggctataccgctgcgagaagtgcgacagcgagttccccaatttcaagtaccgc
atgatcctgtcggatgagtctcgaattaaggccaccgtgatggacgtgaagcccgtggac
tacagagaacatgccagaaggctgatcatgaacatcaggaagaatgcggtgatgtga
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