Ochotona princeps (American pika): 101528754
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Entry
101528754 CDS
T07609
Symbol
PCDH17
Name
(RefSeq) protocadherin-17
KO
K16499
protocadherin delta 2
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
opi04515
]
101528754 (PCDH17)
Cell adhesion molecules [BR:
opi04515
]
Cadherins
Protocadherins
101528754 (PCDH17)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
NUC153
PepSY
Motif
Other DBs
NCBI-GeneID:
101528754
NCBI-ProteinID:
XP_004577500
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Position
8:33417425..33513281
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AA seq
1161 aa
AA seq
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MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGKDARLQPGLPPAERGGGGRSK
SGSYRVLENSAPHLLDVDADSGLLYTKQRIDRESLCRHNAKCQLSLEVFANDKEICMIKV
EIQDINDNAPSFPSDQIEMDISENAAPGTRFPLTSAHDPDAGENGLRTYLLTRDDHGLFA
LDVKSRGDGTKFPELVIQKALDREQQNHHTLVLTALDGGEPPRSATVQINVKVIDSNDNS
PVFEAPSYLVELPENAPLGTVVIDLNATDADEGPNGEVLYSFSSYVPDRVRELFSIDPKT
GLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAHCKVTVKLIDRNDNAPSIGFVSVRQGA
LSEAAPPGTVIALVRVTDRDSGKNGQLQCRVLGGGGTGGGGGGGLGGPGGSVPFKLEENY
DNFYTVVTDRPLDRETQDEYNVTIVARDGGSPPLNSTKSFSVKILDENDNPPRFTKGLYV
LQVHENNIPGEYLGSVLAQDPDLGQNGTVSYSILPSHIGDVSIYTYVSVNPTNGAIYALR
SFNYEQTKAFEFKVLAKDSGAPAHLESNATVRVTVLDVNDNAPVIVLPTLQNDTAELQVP
RNAGLGYLVSTVRALDSDFGESGRLTYEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPV
VELVVKVTDHGKPTLSAVAKLIIRSVSGSLPEGVPRVNGEQHHWDMSLPLIVTLSTISII
LLAAMITIAVKCKRENKEIRTYNCRIAEYSHPQLGGGKGKKKKINKNDIMLVQSEVEERN
AMNVMNVVSSPSLATSPMYFDYQTRLPLSSPRSEVMYLKPASNNLTVPQGHAGCHTSFTG
QGTNASETPATRMSIIQTDNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQA
DSDQDTNKGSCCDMSVREALKMKTSSTKSQPLEQEPEECVNCTDECRVLGHSDRCWMPQF
PAANQADNADYRTNLFVPTVEANVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPY
LKAKRALSPLLQEVPSASSSPTKACIEPCSSTKGSLDGCEAKPGALAEASSQYLPTDSQY
LSPSKQPRDPSFLASEQMARVLAEVHSRASRDSSEMGAVLEQLDHPNRDLGRESVDAEEV
VREIDKLLQDCRGNDPVAVRK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgtacctatccatctgttgctgtttcctcctatgggcccccgccctgacgctcaaaaac
ctcaactactcggtgcccgaggagcaaggggccggcacggtcatcggtaacatcggcaag
gatgctcgcctgcagccggggcttcctccggctgagcgcggcggcggcgggcgcagcaag
tccggcagctaccgggtgttggagaactcggcgccgcacctgctggacgtggacgcggac
agcggactcctctacaccaaacagcggatcgaccgcgagtccctgtgccgccacaacgcc
aaatgccagctgtcgctggaggtgttcgccaacgacaaggagatctgcatgatcaaggtg
gagatccaggacatcaacgacaatgctccctccttcccgtctgaccagatcgaaatggac
atttccgagaacgcagcccctggcacccgcttcccgctcaccagcgcgcacgacccagat
gcgggcgaaaacggcctccgcacctacctgctcacccgcgacgaccacggcctcttcgcc
ctggacgtcaagtcccgcggcgacggcaccaagttcccggagctggtcattcagaaggcg
ctggaccgcgagcagcaaaaccatcacacgctggtgctgacggccctggacggcggcgag
ccgccgcgctcggccacggtgcagatcaacgtgaaggtgatagattccaacgacaacagc
ccggtcttcgaggctccctcctacctggtggagctgcccgagaacgccccgctgggcacg
gtggtcatcgacctgaacgccaccgacgcggacgaggggcccaacggcgaagtgctctac
tccttcagcagctacgtgcccgaccgagtccgggagctcttctccattgaccccaagacc
ggcctcatccgggtcaagggcaacctggactacgaggagaacggcatgttggagatcgac
gtgcaggcccgagacctggggccgaaccccatcccagcccactgcaaagtcacagtcaag
ctcatcgaccgcaacgacaacgcgccgtccatcggtttcgtctccgtacgccagggggcg
ctcagcgaggccgccccgcccggcacggtcatcgccctggtgcgggtcaccgaccgggac
tcgggcaagaacgggcagctgcaatgtcgggtcctggggggaggagggacgggcggcgga
ggcggcgggggcctgggcgggcccgggggctccgtccccttcaaactggaggagaactat
gacaacttctacacggtggtgacggaccgcccgctggaccgggagacccaggacgagtac
aacgtgacaatcgtggcgcgggacgggggctcgcctcccctcaactccacgaagtcgttc
tcggtcaagatcctagacgagaacgacaaccctccccgcttcaccaaggggctctacgtg
ctgcaggtgcacgagaacaacatcccaggagaatacctaggctccgtgctggcccaggat
cccgacctggggcagaacgggaccgtgtcctattccatcctgccctcccacatcggcgac
gtgtccatctacacctatgtctccgtgaaccccaccaacggggccatctatgccctgcgc
tcctttaactacgaacagaccaaggctttcgagttcaaggtgctggcgaaggactcgggg
gcacccgcgcacctggagagcaacgccacggtgagggtgaccgtgctggacgtgaatgac
aacgctccggtgatcgtactgcccacgctgcagaacgacaccgcggaactgcaggtgccg
cgcaacgccggcctcggctacctggtgagcaccgtgcgagccctggacagcgacttcggc
gagagcgggcgcctcacctacgagatcgtggacggtaacgacgaccacctgtttgagatc
gatccgtccagcggcgagatccgcacgctgcaccccttctgggaagacgtgacgcccgtg
gtggagctggtggtgaaggtgacggatcacggcaagcccaccctgtccgccgtggccaag
ctcatcatccgctcggtgagcggctccctgcccgagggggtgccccgggtgaacggcgag
cagcaccactgggacatgtcgctgccgctcatcgtgactctgagcaccatctccatcatc
ctcctagcggccatgatcaccatcgccgtcaagtgcaagcgggagaacaaggagatccgc
acttacaactgccgcatcgccgagtacagccacccgcagctgggcgggggcaagggcaag
aagaagaagattaacaaaaacgatatcatgctggtgcagagcgaagtggaggagaggaac
gccatgaacgtcatgaacgtggtgagcagcccctccctggccacctcccccatgtacttc
gactaccagacccgcctgcccctcagctcgccccggtcggaggtgatgtacctcaaaccg
gcctccaacaacctgactgtcccgcaggggcacgcaggctgccacaccagcttcaccgga
caagggactaatgcgagcgagacccctgccactcggatgtccataattcagacagacaat
tttcccgcagagcccaattacatgggcagcaggcagcagtttgttcaaagtagctccacg
tttaaggacccagaaagagccagcctgagagacagtgggcacggggacagtgatcaggct
gacagtgaccaagacactaacaaaggctcctgctgtgacatgtctgttagggaggcactc
aagatgaaaacttcttcaactaaaagccaaccacttgaacaagaaccagaagagtgtgtt
aattgcacagatgaatgccgagtgcttggtcattctgacaggtgttggatgccacagttc
cctgcagccaatcaggctgacaatgctgattaccgcacaaatctctttgtacccaccgtt
gaagctaatgttgagactgagacttacgaaactgtgaatcccactgggaaaaagactttt
tgtacatttggaaaagacaagcgagagcacactattctcattgccaatgttaaaccttat
ttaaaagccaaacgtgccctgagccctctcctccaagaggtcccttcagcatcaagcagc
ccaaccaaggcgtgtatcgagccttgctcctcgacaaaaggctccttggatggttgtgaa
gcgaaaccaggagccctcgccgaagcaagcagtcaatatttacccactgacagtcagtat
ctgtctcccagtaagcaaccgagagacccttccttcctggcttccgagcagatggcaagg
gtcttggcagaggtgcattcccgagcaagccgggattcctccgagatgggcgctgttctt
gagcagctggaccatcccaacagggatctgggcagagagtcagtggatgcagaagaagtt
gtgcgagagattgataagcttttgcaggactgccggggaaatgaccctgtggctgtgaga
aagtga
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