Ochotona princeps (American pika): 101529215
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Entry
101529215 CDS
T07609
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04151
PI3K-Akt signaling pathway
opi04510
Focal adhesion
opi04512
ECM-receptor interaction
opi04518
Integrin signaling
opi04611
Platelet activation
opi04820
Cytoskeleton in muscle cells
opi04926
Relaxin signaling pathway
opi04933
AGE-RAGE signaling pathway in diabetic complications
opi04974
Protein digestion and absorption
opi05146
Amoebiasis
opi05165
Human papillomavirus infection
opi05205
Proteoglycans in cancer
opi05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101529215 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101529215 (COL1A1)
04518 Integrin signaling
101529215 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101529215 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101529215 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
101529215 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
101529215 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
101529215 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
101529215 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101529215 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
101529215 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
101529215 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101529215 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
opi00536
]
101529215 (COL1A1)
Glycosaminoglycan binding proteins [BR:
opi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101529215 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
FnI_RECK
Motif
Other DBs
NCBI-GeneID:
101529215
NCBI-ProteinID:
XP_004591119
LinkDB
All DBs
Position
19:complement(13227391..13242105)
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AA seq
1462 aa
AA seq
DB search
MFSFVDLRLLLLLAATALLTHGQEEGQVEGQSEDIPPVTCVQDGIRYSEGEIWKPEPCQI
CVCHKGDILCDEVICEDTNNCPGAKVLPNECCPVCPEDPDIPTDQDTAGVEGPKGDTGPR
GARGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSAGVSVPGPM
GPSGPRGLPGPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRP
GERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQM
GPRGLPGERGRPGPPGTAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGAR
GSEGPQGIRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQ
GPSGPPGPKGNSGEPGAPGNKGDTGAKGEPGPAGVQGPPGPAGEEGKRGARGEPGPAGLP
GPPGERGGPGSRGFPGADGVAGPKGPAGERGAPGPAGPKGSPGEAGRPGEAGLPGAKGLT
GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP
GPPGAVGAPGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQ
GVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGSNGAPGNDGAKGDAGAPGAPGSQ
GAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDK
GETGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPP
GPAGPAGPPGPIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPA
GKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGITGQRGVV
GLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGSPGAE
GSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPIGPA
GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR
GPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFIMP
QPPQEKAHDGGRYYRADDANVMRDRDLEVDTTLKSLSQQIENIKSPEGSRKNPARTCRDL
KMCHSDWKSGEYWIDPNQGCNLDAIKVYCDMETGATCVYPTRPSIAQKNWYISNNPKEKK
HVWFGESMTDGFQFEYGGEDSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTG
NLKKSLLLQGSNEIELRGEGNSRFTYTVIHDGCTSHTGTWGKTVIEYKTTKTSRLPIIDV
APLDIGAPDQEFGFDIAPACFL
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcctcttagcggccaccgccctcctgacg
cacggccaggaggaaggccaagtcgagggccaaagcgaagacatcccaccagtcacctgc
gtgcaggacggtatccggtacagtgaaggagaaatatggaaacccgagccgtgccagatc
tgcgtctgccacaagggcgacatcttgtgcgatgaggtgatctgtgaggacaccaacaac
tgtcctggcgccaaagtgcttcctaatgagtgctgccctgtctgccccgaagacccggat
atccccactgaccaggataccgccggagtcgagggacccaagggagacactggaccccga
ggcgcacggggacccgccggaccccctggccgagatggcatccccggacagcccggactt
cccggccccccaggccccccaggccctcctggaccccctggcctcggaggaaactttgct
ccccagatgtcttacggctatgatgagaaatctgctggagtttctgtgcctggtcccatg
ggtccttccggtcctcgcggtcttcctggccctcctggctcacctggtccccaaggtttc
caaggtccccctggagagcccggcgagcctggagcttctggtcccatgggtccccgtggt
cctcctggccctcctggcaagaatggagatgatggagaagctggaaaacctggtcgtcct
ggtgagcgtgggcctcctgggcctcagggtgctcgtggcctgcctggaacagctggcctt
cccggaatgaaaggacacagaggtttcagtggtttggatggtgccaagggagatgctggc
cctgctggtcccaagggtgagcctggtagccctggtgaaaatggagctcctggtcagatg
ggcccccgtggtctgcctggtgagagaggccgtcctggaccccctggcactgctggtgct
cgtggaaatgatggtgctactggtgctgccggcccccctggtcccactggtcctgctggt
cctcctggcttccctggagctgtcggtgctaagggtgaagctggtccccaaggagcccga
ggctctgaaggtccccagggtattcgtggtgaacccggtccccctggccctgctggtgct
gctggccctgctggaaaccctggtgctgatggacaacctggtgctaaaggtgccaatggt
gctcctggtattgctggtgctcctggcttccctggtgcccgcggcccctctggaccccag
ggccccagcggccctcctggtcccaagggtaacagtggtgaacctggtgcccccggcaac
aaaggagacactggtgccaagggagagcctggtcccgctggtgttcaaggaccccctggc
cctgctggagaggaaggaaaacgaggtgcccgaggtgaacccggacctgctggcctgcct
ggaccccctggcgagcgtggtggacctggcagccgcggtttccctggtgcagatggtgtg
gctggccccaagggtcctgctggcgaacgtggtgctcctggtcctgctggccccaaagga
tctcctggtgaagctggccgccccggtgaagctggtctgcctggtgccaagggtctgact
ggaagccctggtagccctggtcctgatggcaaaactggtccccctggtcccgctggtcaa
gatggtcgccctggacccccaggtcctcctggtgcccgtggtcaggctggtgtgatggga
tttcctggacccaaaggtgccgctggagaacccggtaaagctggagagagaggcgttcct
ggaccccccggcgctgtgggtgcccctggcaaagacggagaagctggagctcagggaccc
cctggacctgctggtcctgctggagagagaggtgaacaaggccctgctggttccccagga
ttccagggtctccctggccccgctggtccccctggagaagcaggcaaacctggtgaacag
ggtgttcccggtgacctcggcgcccccggcccctctggagccagaggagagagaggcttc
cctggagaacgtggtgtgcaaggtcctcccggccccgctggcccccgcggatccaacggt
gctcctggcaatgatggtgctaagggtgatgctggtgcccctggtgctcccggcagccaa
ggtgcccctggccttcagggaatgcctggtgaacgtggtgcagctggtcttccaggtccc
aagggtgacagaggtgatgctggtcccaaaggtgctgatggctctcctggcaaagatggt
gtccgtggtctgactggtcccattggtcctcctggccccgctggtgctcccggtgacaag
ggtgaaacgggtcccagcggccctgctggtcccactggagctcgtggtgcccctggagat
cgtggcgagcctggtccccccggccctgctggcttcgctggcccccctggtgctgatggc
caacctggtgctaaaggcgaacccggtgatgctggtgctaagggtgacgctggtcctccc
ggccctgctggtcctgccggtcctcctggccctatcggtaacgttggtgctcctgggccc
aaaggcgctcgtggcagtgctggtcctcctggtgctactggtttccctggtgctgctggc
cgtgtcggcccccctggcccctctggaaatgctggaccccctggccctcctggccctgct
ggcaaagaaggtggcaaaggtccccgtggtgagactggccccgctggacgacctggtgaa
gttggaccccctggccctcctggccctgctggcgagaaaggatcccctggtgctgatgga
cctgctggcgctcccggaacacccggacctcagggcattactggacagcgtggtgtagtc
ggcctgcctgggcagagaggagaaagaggcttccctggcctgcctggcccctctggtgaa
cctggcaaacaaggtccttctggagccagcggcgagcgtggtccccctggccccatgggc
ccccctggactggctggaccccctggtgaatctggacgtgagggctctcctggtgctgaa
ggctcccctggtcgtgatggctctcctggccccaagggtgaccgtggtgagactggccct
gctggaccccctggcgctcctggcgctcccggtgctcctggtcctgtgggccctgctggc
aagagtggtgatcgtggtgagacgggtcctgctggtcctgctggtcccattggccctgct
ggtgcccgcggccctgctggtcctcaaggtccccgtggtgacaagggtgagacaggcgaa
cagggcgacagaggcatcaagggtcaccgtggcttctccggtctccagggtcctcctggc
cctcctggctctcctggtgaacaaggtccttctggagcatctggccctgctggtccccgc
ggtccccctggctctgctggagctcctggtaaagacggactcaacggcctcccaggtccc
attggcccccctggtccccgaggtcgcactggtgacgccggccctgttggtccccctggt
cctcctggtccgcctggtcctcctggtcctcccagtgctggtttcgacttcatcatgccc
caaccacctcaagagaaggctcatgacggcggccgctactaccgggctgatgacgccaat
gtgatgcgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatc
gagaacatcaagagccccgagggcagccgcaagaaccctgcccgcacctgccgggacctc
aagatgtgccactcagactggaagagcggagagtactggatcgaccccaaccaaggctgc
aacctggacgccatcaaggtctactgtgacatggagactggagccacctgcgtgtacccc
acacgtcccagcattgcccagaagaactggtacatcagcaacaatcccaaggagaagaag
cacgtgtggttcggagagagcatgaccgatggcttccagttcgaatacggcggcgaagac
tccgaccctgccgatgtggctatccaactgacattcctgcgcctgatgtccaccgaggcc
tcccagaacattacctaccactgcaagaacagcgtggcctacatggaccagcagactggc
aacctcaagaagtccctgctcctccagggctccaacgagatcgagctgcggggagagggc
aacagtcgcttcacctacacagtcatccacgacggctgcacgagtcacaccggaacctgg
ggcaagacagtgatcgaatacaaaaccaccaagacctcccgcctgcccatcatcgatgtg
gctcctttggacattggtgccccagaccaggaattcggtttcgacattgccccggcctgc
ttcctgtaa
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