Ochotona princeps (American pika): 101529286
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Entry
101529286 CDS
T07609
Symbol
PRPF19
Name
(RefSeq) pre-mRNA-processing factor 19 isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03040
Spliceosome
opi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101529286 (PRPF19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101529286 (PRPF19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opi03041
]
101529286 (PRPF19)
04121 Ubiquitin system [BR:
opi04121
]
101529286 (PRPF19)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101529286 (PRPF19)
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101529286 (PRPF19)
Spliceosome [BR:
opi03041
]
Complex B
Other components
Prp19 complex
101529286 (PRPF19)
Complex C
Prp19-CDC5 complex
101529286 (PRPF19)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
U-box type E3
101529286 (PRPF19)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
101529286 (PRPF19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
WD40_Gbeta
Beta-prop_WDR3_2nd
Prp19
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_Aladin
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_WDR41
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
U-box
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_WDR19_1st
Beta-prop_SPT8
PROPPIN
Beta-prop_Nup120_160
Beta-prop_ACSF4
eIF2A
Cytochrom_D1
RMC1_N
zf-Nse
Beta-prop_DCAF12
Beta-prop_VPS8
Ge1_WD40
Beta-prop_WDR35_TULP_N
B-prop_COPA_B_2nd
DUF1830
Motif
Other DBs
NCBI-GeneID:
101529286
NCBI-ProteinID:
XP_004585323
LinkDB
All DBs
Position
1:complement(104744920..104753892)
Genome browser
AA seq
526 aa
AA seq
DB search
MSLICSISNEVPEHPCVSPVSNHVYERRLIEKYIAENGTDPINNQPLSEEQLIDIKVAHP
IRPKPPSATSIPAILKALQDEWARRRHPHRGHLSWPSPCASLSQDAVMLHSFTLRQQLQT
TRQELSHALYQHDAACRVIARLTKEVTAAREALATLKPQAGLIVPQAVPSSQPSVVGAGE
PMDLGELVGMTPEIIQKLQDKATVLTTERKKRGKTVPEELVKPEELSKYRQVASHVGLHS
ASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDL
VFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLLSSSDDQYWAFSDIQTG
RVLTKVTDETSGCSLTCAQFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSI
AFSENGYYLATAADDSSVKLWDLRKLKNFKTLQLDNNFEVKSLIFDQSGTYLALGGTDVQ
IYICKQWTEILHFTEHSGLTTGVAFGHHAKFIASTGMDRSLKFYSL
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgtccctcatctgctccatctccaacgaggtgccggagcacccgtgcgtgtcccccgtg
tccaatcacgtctacgaacggcggctcatagagaagtacattgctgagaatggtacagac
cctattaacaaccagcctctgtctgaggagcagctcatcgacatcaaagttgctcacccg
atccggcccaagcctccctcagccaccagcatcccggccatcctgaaagccttgcaggac
gagtgggctaggagacggcatcctcacagaggccacctctcctggccctcaccgtgtgct
tccctctcccaggatgcggtcatgctgcacagcttcaccctgcgccagcagctgcagacc
acccggcaggagctgtcccacgcgctctaccagcacgatgccgcctgccgtgttattgcc
cgcctcaccaaggaagtcactgctgcccgagaagctctggctaccctgaagccacaggcc
ggtctcatcgtgccccaggctgtgccgagctcgcagccaagtgtggtgggtgcaggcgag
cccatggatttgggtgagctggtgggcatgaccccggagattatccagaagcttcaagac
aaggccactgtgctgaccacggagcgtaagaagagagggaaaactgtgcctgaggagctg
gtgaagccagaggagctcagcaaataccggcaggtggcatcccatgtgggcttgcacagt
gccagcattcctgggatcctcgccttggatctctgcccctcagacaccaacaagatcctc
actggtggggcggataaaaacgtcgttgtctttgataagagctctgaacaaatcctggcc
accctcaaaggccacactaagaaagtcaccagtgtggtgttccacccttcccaggatctg
gtgttttctgcctctccagatgccactatcaggatttggtcagttccgaacgcctcttgc
gttcaggttgtacgggcgcatgagagcgctgtgacaggcctcagcctccatgccaccggg
gactacctcttgagctcttcagacgaccagtactgggccttctctgacatccagacaggc
cgtgtgctcaccaaggtgacggatgagacctccggctgctctctcacctgtgctcagttc
caccctgatggcctcattttcggaacaggaaccatggactctcagatcaagatctgggac
ttgaaggagcgcaccaatgtggccaatttccctggtcactcaggccccatcaccagcatt
gccttctccgagaacggctactacctggccacggcagctgatgactcttcagtcaaactc
tgggatctgcgcaagctgaagaacttcaagacgctgcagctggacaacaactttgaggtg
aagtccctcatctttgaccagagtggcacctacctggccctggggggcacagacgtccag
atctacatctgcaagcagtggacggagattctgcacttcacagagcacagcggcctgacc
acaggggttgccttcggacaccacgccaaattcattgcttctacaggcatggacaggagc
ctcaagttctacagcctgtag
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integrated database retrieval system
