Ochotona princeps (American pika): 101529421
Help
Entry
101529421 CDS
T07609
Symbol
TARBP1
Name
(RefSeq) probable methyltransferase TARBP1
KO
K15333
tRNA guanosine-2'-O-methyltransferase [EC:
2.1.1.34
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
opi03016
]
101529421 (TARBP1)
03036 Chromosome and associated proteins [BR:
opi03036
]
101529421 (TARBP1)
Enzymes [BR:
opi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.34 tRNA (guanosine18-2'-O)-methyltransferase
101529421 (TARBP1)
Transfer RNA biogenesis [BR:
opi03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
101529421 (TARBP1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
101529421 (TARBP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpoU_methylase
TARBP1
Motif
Other DBs
NCBI-GeneID:
101529421
NCBI-ProteinID:
XP_036351071
LinkDB
All DBs
Position
16:complement(44843189..44931977)
Genome browser
AA seq
1530 aa
AA seq
DB search
MEWVLTEALLSQSRDPRVLLGALCRGEASAERVETLRFLLQRLEDEAARGGGGGALPEAA
REVAVGYLVPLLRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALVAALA
EEALRDLRSRDPEAAVEVLAAVGPCLRPREDGPLLERVAKASVALALGGDEEEAGLAEEA
AALVACRLLPALAQCGGAALRAVWGGLAAPVPSPGTDRVGPKLLMLSALAEKLLPEPGPG
RTPCVPDAGPDARRCWRFWRTVQAGLGQAEDALTRKRARYLLQRAVEVSAELGADCTCSP
QEGNGPSLFWWSDKKKDELLKFWENYILIMETLEGNQIHVIKPVLPKLNNLFEYAVSEEN
ECWLFHPSWHLCIYKRMFESENKILTKEGVIHFLELYETKLLPFSAELSEFIIGPLMDAL
SESSLYGRSPGQLIGSGSPLGLKLQKFLVTYISLLPEERKSGFLLQFIQRMNSRHWCAVP
ILFLSKALANIPRCKALGIEGLLALRGHVTCTSTTASCRDPSLGQASVEYKTVLRGENCF
LPDWFEARLTATMVLLAVDVEGMKTQYSEKQRTQNGLKLFLAPLMDALMKLGTNAYMPLP
KTDRCLQLLWKLLQTCMLKSSGTHNGEDGPEMLGNVFNLSGVKSYSEVPDLERCRLYLMV
LTELLDLHSKVGWKGGSPLWRIISPLKNASIQHLQEMDGSQEPTLGTQIQRVVSMAALAM
VCEAVDQKPEPQLESLDVGPTERFLSCLQLNQTLQKPHTEEQSRCVHPSPLSALRAESSS
SQGWGKIVAQYIHDQWVCLSCLLKKYHALIPTTESEIAEPFLPAVQVPGRTLQSALEALT
ALSSDQVLPVFQCMKILVPKLLTSSESLCIESFDMAWKIISSLSNTQLTFWPNLKAFVQF
VFDNKILTIAAKTKGQAYFKIKEIMYKIIEMSALKTGVFNTLINYCCQSWIVSASHVSQG
SLSSAKHYSEMILEACVFGTVFRRDQRLIQDVQTFVENLGHDCAANVVIENTKREDHYVR
ICAVKFLCLLDGSDMSHKLFLEDLAVKLLDKDELVSKSRTRCYVNSLQHRVKNRIWQTLL
VLFPRFDQNFLNGTIEKIFQAGFINNQASIKYFIEWIIILILHKYPQFLSKFWDCLSSGE
EKLKTSICTFLSVLTHLDVITQNIPEKKLVLKQALITVLQWCFNHNFSIRLYALMALKKI
WNMCKALRVKEFDALAPVIESSLSQVESMHGAGNAKKNWQRIQEHFFFSTFHPLKDYCLE
TIFYILPRLAGLVEDEWIAVDKFTGFTDIPLDAGFQWYLSQTQLRELKPGDWSQQDMGPS
PGETEAEFFDVQKKIIPWKNNVPESDLELVFQDRAAKLGKSISRLIVVASLIDKATNLGG
LCRTCEVFGASALAVGNLQCISDKQFQHLSVSAEQWLPLVEVRPPQLIDYLQQKKAEGYT
IIGVEQTAKSFDLTQYCFPEKSLLLLGNEREGIPAHLIQQLDVCVEIPQQGIVRSLNVHV
SGALLIWEYTRQQLLKHAGVAAPRNSMCLM
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atggagtgggtgctcacggaagcgttgctttcgcagagccgggatccgcgggtcctgctc
ggggcgctgtgccgcggggaggcatccgccgagcgggtggagacgctgcgcttccttctg
cagcggctcgaggatgaggcggcgcgtggcggcggtggcggcgcgctcccggaggcggcg
cgcgaggtcgccgtgggctacctcgtgccgctgctgagggacnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcgctggtggccgcgctggcg
gaggaggcgctgcgggacctgcgctcccgggaccccgaggcggccgtggaggtgctggca
gccgtggggccctgtctgcggccccgcgaggacgggccgctgctcgagcgggtggcaaaa
gcctccgtcgccctggcgctgggcggagacgaggaggaggccgggctcgccgaggaggcg
gcggcgctcgtggcctgccgactgctgccggcgctggcccagtgcggaggggcggctctg
cgggccgtgtggggcgggctggccgcgccggtgccgtctccgggaacggaccgcgtcggg
ccgaagctgctgatgctgagcgccctggccgagaagctgctgcccgaaccgggccccggg
cgcaccccctgcgtgcccgatgcggggccggatgcccggcgctgctggcgtttctggagg
accgtgcaggcgggcctgggccaggcggaggacgccctgacgcgcaagcgagcgcgctac
ctgctgcagagggcggtggaggtgtctgcggagctcggggccgactgcacctgcagtccg
caggaaggaaacggcccaagtctgttttggtggtctgataagaaaaaagatgagcttcta
aaattttgggaaaattatattttaattatggaaactcttgaaggaaatcagatacacgtc
atcaaaccagtcttaccaaagctcaacaatctgtttgaatatgcagtgtcagaggaaaat
gaatgttggctctttcacccctcttggcacttgtgtatttataaaagaatgtttgaaagt
gaaaacaaaatcctgaccaaggaaggtgttatccatttcttggagctgtatgaaacaaag
ctgcttccattttctgcagaactttcagagtttatcattggaccactgatggatgctctt
tccgagagctctctgtatggcaggtccccaggccaactgataggaagtggttctccatta
ggactgaaattacagaagtttttagtcacttatatttctcttcttccagaagaaagaaag
agtggtttcctgttacagtttattcagaggatgaacagtagacattggtgtgctgttccc
attttgtttctctctaaggctttggcaaacatcccacgatgtaaagccctgggtatagaa
gggctgcttgctctcagggggcatgtcacctgcaccagcaccacggccagctgtagagac
ccgagcctcggccaggcctctgtggaatacaagacagtgctgcgaggggaaaactgcttt
ctgcctgattggtttgaggccagactcacagctacgatggtcttgctggctgtggatgta
gaaggaatgaagactcaatacagtgaaaaacagaggacacagaatggattgaagctcttt
ttagctcctctgatggatgccctcatgaagctgggaacaaatgcttacatgcccttgccg
aaaacagaccgatgcctccagttgctgtggaagctgttgcaaacatgcatgttgaaaagt
tctggtacccacaatggtgaggatggccccgagatgttgggcaatgtgtttaacctctct
ggagtgaagtcttatagtgaagttccggatctagaacgttgccgtttgtacctgatggtt
ttaactgagcttttggatctccactccaaggttgggtggaaaggggggagtcccctttgg
agaattatttctcctttgaaaaatgcatccattcagcatcttcaggagatggacgggagt
caggagccaacccttggtactcagattcagagagtggttagtatggctgccttggccatg
gtgtgtgaggccgttgaccagaagcctgaaccacagctggagtctctggatgttggtccc
acagaaaggttcctctcctgtctccagctcaatcagacactgcagaaaccccacacagag
gaacagagcaggtgtgttcatccctcccccctctccgccctgagagcagagtcatcatct
tcccaaggatgggggaaaatagttgcacaatatattcatgatcagtgggtttgcctatct
tgtctattgaaaaaatatcatgctctgatacccaccacagagagtgaaattgcagagccc
tttctgcctgctgttcaagtgccagggaggactctgcagtctgcactggaagccctcaca
gcactgtcttctgatcaggttttgcctgtgttccagtgcatgaaaattttggttcccaag
ctcctgacctcttctgaatctctctgcatagagtcttttgacatggcctggaaaattata
tcttccttaagcaacactcagctgacattctggcctaatttgaaagcttttgttcagttt
gtttttgataataaaattctcacaattgcggcaaaaaccaagggccaggcatatttcaaa
ataaaagagattatgtacaaaataattgaaatgtctgctctaaaaactggagtcttcaat
acgctgataaattattgctgccagtcttggatagtgtctgcctctcatgtgtcccaaggc
tctttatcaagtgctaaacattatagtgaaatgatccttgaggcttgtgtatttggaact
gtgtttaggcgtgatcaaagacttattcaggatgtacagacttttgtagaaaatcttgga
catgactgtgcggcaaacgttgttattgaaaacactaaaagggaagaccattatgtgcga
atttgtgctgtcaaattcctgtgcttattagatggttcagatatgtctcacaagttgttt
ctggaagatcttgcagtcaagctgttagataaagatgagctggtgtccaagtccagaacc
cgctgctatgtgaattctctgcagcacagagtgaaaaaccggatctggcagactctgctc
gtcctcttcccccgcttcgatcagaatttcttgaacggaactattgagaagattttccag
gctggatttatcaacaatcaagcatctataaaatattttatagaatggattattatctta
attcttcataaataccctcagtttctttcaaagttttgggattgtttgtcttctggtgaa
gaaaaacttaaaacaagcatttgtacgtttttatcagttttgactcatttggatgtcatt
actcaaaatattccagaaaagaaactagttctgaagcaagcgcttattactgtgctgcag
tggtgtttcaatcacaacttcagcattcggctgtatgctctaatggcactgaagaaaatc
tggaacatgtgcaaagccttacgtgtcaaagaatttgatgctttagctcctgtgattgaa
tccagtctcagtcaggtggagagcatgcacggagctgggaatgccaagaagaattggcag
cgcatccaagagcatttcttcttttccacatttcaccccctgaaggattactgtctggag
accatattttacatcctgccacgtctcgcaggcctcgtggaggatgaatggatcgctgtg
gacaagtttactggtttcactgacatcccattggatgcgggatttcagtggtacctttct
cagactcagctccgtgaactgaagcctggtgactggtctcagcaagacatgggccctagc
ccaggcgaaacagaagcagaattttttgatgttcagaagaagattatcccatggaaaaat
aatgtgcctgaatcagacctggagctcgtgtttcaggaccgtgctgccaaacttgggaag
tccattagtagactgatcgtggtggcctctctcattgataaagcaaccaacttgggaggg
ctgtgccgaacctgtgaggtgtttggggcctcagcgctggctgtgggcaatcttcagtgc
atcagcgacaagcagttccagcacctcagcgtctctgcagaacagtggcttcctctggtt
gaggtaagaccacctcagctaattgattacctgcaacagaaaaaagctgaaggctatacc
atcattggagtggagcaaactgccaaaagctttgacctgacccagtactgctttcctgag
aagtccctgcttttgctgggaaatgagcgtgaagggatccccgcccatctgatccagcag
ctggacgtgtgtgtggaaatcccgcaacagggcattgtccgctcactgaatgtgcatgtg
agtggagccctgctgatctgggagtacacacggcagcagctgctcaaacatgcaggagtg
gcagctccccgcaacagcatgtgcctcatgtga
DBGET
integrated database retrieval system
