Ochotona princeps (American pika): 101529551
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Entry
101529551 CDS
T07609
Symbol
SOX2
Name
(RefSeq) transcription factor SOX-2
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04390
Hippo signaling pathway
opi04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04390 Hippo signaling pathway
101529551 (SOX2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
101529551 (SOX2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101529551 (SOX2)
Transcription factors [BR:
opi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101529551 (SOX2)
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Ortholog
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
101529551
NCBI-ProteinID:
XP_012784152
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Position
14:complement(44487577..44500026)
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AA seq
542 aa
AA seq
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MNRRTFDESSVLDPAGGSRLPGAGTQRGWAAGSGQRAAGLRSARAQRPLSDTADCAQRQA
WPPLPVRKGLGEHSENGERTGKRDSPATAPHPRPVLLYQKTACPATGITKYGRRTDANRG
ADAARTAPGRRLREGLLSPREWERQSQQNAGEDPPKGGGRARSSACHNLCNRTASGRLRG
LGDLLSPGGFHLRAGGRADVHQTAESRGSQATTFPGLKENNTATLLRLCPPGPQQTSGGG
GGGGGGGGNATAAAAGGNQKNSPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRL
GAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKTLMKKDKYTLPGGLLAPG
GNSMASGVGVGAGLGAGVNQRMDSYAHMNGWSNGSYSMMQDQLGYPQHPGLNAHGAAQMQ
PMHRYDVSALQYNSMTSSQTYMNGSPTYSMSYSQQGTPGMALGSMGSVVKSEASSSPPVV
TSSSHSRAPCQAGDLRDMISMYLPGAEVPEPAAPSRLHMSQHYQSGPVPGTAINGTLPLS
HM
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaatagaagaaccttcgacgaaagctctgtcctcgaccccgccggcggctcgcgcctt
ccgggggctggaacccagcgcggctgggcagcgggcagtgggcagcgggcagcgggcctc
cgctcagctcgcgcccagcgccccctgtcggacaccgcggactgtgcccagcgccaggcc
tggccaccgctgcccgtccgcaaagggcttggagaacactcggaaaacggcgaaaggacg
ggcaagcgggattccccggccacggctccccatcctcgacccgttttgctctatcagaaa
acggcttgtcccgcgacaggaatcaccaaatacgggcggagaaccgatgcgaaccgagga
gcggacgcggcgcggaccgctccgggtcgcaggctgcgcgaggggctcttgtctccccgc
gagtgggaaaggcaaagccagcaaaacgcgggagaagacccaccaaagggggggggccgg
gcccgttcctcggcatgccacaatctttgcaacaggacagcgtctgggcgacttcggggg
ttgggggaccttctatccccggggggcttccacctgcgcgcaggcgggagggcggacgtg
caccagactgcggagagccggggcagtcaggccacaacttttccagggctcaaggagaat
aacacagccaccctccttagattatgtccgccgggcccgcagcagacttcggggggcggc
ggcggcggtggcggcggtggtggcaacgccacggcggcggcggccggcggcaaccaaaag
aacagcccggaccgcgtgaagcgacccatgaacgccttcatggtgtggtcccgcgggcag
cgtcgcaagatggcccaggagaaccccaagatgcacaactcggagatcagcaaacgcctg
ggcgccgagtggaaacttttgtcggagacggagaagcggccgttcatcgacgaggccaag
cggctgcgggcgctgcacatgaaggagcacccggattataaatatcggccgcggcggaaa
accaagacgctcatgaagaaggataagtacacgctgcccggcgggctgctggcccccggt
ggcaacagcatggccagcggggtcggggtgggcgccggcctgggcgcgggcgtgaaccag
cgcatggacagctacgcgcacatgaacggctggagcaacggcagctacagcatgatgcag
gaccagttgggctacccgcagcacccgggcctcaacgcgcacggcgcggctcagatgcag
cccatgcaccgctacgacgtgagcgcgctgcagtacaactccatgaccagctcgcagacc
tacatgaacggctctcccacctacagcatgtcctactcgcagcagggcacccccggcatg
gcgctcggctccatgggctcggtcgtcaagtccgaggccagctccagcccccccgtggtt
acctcttcctcccactccagggcgccctgccaggccggggacctccgggacatgatcagc
atgtacctccccggcgccgaggtgccagagcccgccgcccccagcagactgcacatgtcg
cagcactaccagagcggcccggtgcccggcacggccattaacggcacactgcccctctcg
cacatgtga
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