Ochotona princeps (American pika): 101529898
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Entry
101529898 CDS
T07609
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101529898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101529898
03041 Spliceosome [BR:
opi03041
]
101529898
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101529898
Spliceosome [BR:
opi03041
]
Complex B
Other components
Prp19-related factors
101529898
Complex C
101529898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
TPR_12
TPR_8
TPR_19
TPR_2
Motif
Other DBs
NCBI-GeneID:
101529898
NCBI-ProteinID:
XP_036350867
LinkDB
All DBs
Position
15:complement(67206007..67209478)
Genome browser
AA seq
887 aa
AA seq
DB search
MQQLGKSASEEDLPFEKQITQNKYCIKSWLHYIEFKPGTPKPRRNHREKNVLNVLPDSYK
LWSHYLKERRAQVXRRCVEDPAYGNVNNCHHRTFGFMHKMPWLWLDYCQLLMDKGSITGT
RHTFDHALWALPIKQHCHIWLLYLHFLGSHPLPETAIRVYWCFLKVSPENAEEYIDCLKG
SDQLDEAAQCMATMVNDQCFVSKASKSKYQLWFELCDLMLQNPDKVHSLHMHTIICWGLT
HFTNHLSKLWCSLADYYICSGHIEKAQEMYEEAIWTMMTVRDFTQIFDSYAQFEESVISA
KMETALERGHEKEDEDMDLELRLTSIEQLISRHPLLLNSILLRQNPHNVYKWHKCVALHE
GHPGKIIKTYMEAVQTVDPFHATGKTHMLWVAFAKFYEDNGQLDDARVILEKATKVNFKQ
MDYLVTVGCQCGVLELWHENYEEALQLLXKATALPTCPADYFDSSEPVQRHTHMSLKLWS
MLTDLQESLGTSQSKKVEYDCILDLRITSPSXDIHYAKFMEENKYFEDSFKAYEHGISLF
EWPNMSDIWSTYLAKFITSYWGNNLEVAQDLFEQALDGCSPKYCKTLDLLCAQLKKKGGL
ARDTMAVYECAILAVESSQHYNKFQLCITRAAEICRVTHTRRIYQKAIEVLSDEHTREMC
LQFAEMGCNLGETDQGCAIYNFRLQICDPRKTSAFXTTWKEFKACHGNEDTIHEMLRVRC
SVQATYNMQVNFMASHMLKVLSSATGTVSDLAPGQSCMDSMRLLEQRAEQLATQVERDQP
PXAQSKIFFVGSNGDCEELAEMAKQDNPEKIQLGEDEEMDLEPCEVPLQQXSVPVALFRK
LKENYTTNLPRRQQSWLKYFGPCCLEFQFHIQHRPGLPLVGTCALNQ
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaactggggaaatcggcatcagaagaggatcttccctttgagaagcagatcacg
caaaacaagtactgcatcaaatcctggctccactacatcgagttcaaaccagggacgccc
aaacctaggcgcaaccaccgtgaaaaaaatgtgctcaatgtgctgcctgacagctacaaa
ctctggtcacactacctgaaggagaggagggcccaggtgtagcgccgctgtgtggaagac
cctgcctacgggaatgtcaacaactgtcaccacaggacttttgggttcatgcacaagatg
ccctggctgtggctggattactgccagctcctgatggacaagggcagtatcacgggtact
cgccacaccttcgaccacgccctgtgggccctgcccatcaagcagcactgccacatctgg
ctcctgtacctgcatttcctgggttcacaccctctgcccgagacagccattcgagtctac
tggtgcttcctcaaggtgagtcctgagaacgctgaggaatatattgactgtctcaagggc
agtgaccagctggacgaggcagcacagtgcatggcaaccatggtcaatgaccaatgcttt
gtgtccaaggccagcaaatccaagtaccagctgtggttcgagctgtgtgacctcatgctg
caaaacccagacaaggtgcattccctccacatgcacaccatcatctgctggggcctcacc
cacttcaccaaccacctgagcaagctctggtgctctttggctgactactacatctgcagc
ggccacattgagaaggctcaggaaatgtacgaggaggccatctggaccatgatgactgtg
agagacttcacacagatttttgacagctacgcccagtttgaggagagtgtgatctccgcc
aagatggagacggccttagagagagggcatgagaaggaggatgaggacatggatctggag
ctgcgcctgaccagcatcgagcagctcatcagcaggcatcccctgctactcaacagcatc
ctactccgccagaacccgcataacgtatacaagtggcacaaatgtgtggctttgcatgaa
ggtcatcctggcaagatcatcaagacatacatggaggcagtgcagacagtggaccccttc
catgccacgggcaagacccacatgctgtgggttgcatttgccaagttttatgaagacaat
gggcagctggacgatgcccgtgtcatcctggagaaggccacaaaggtgaacttcaagcag
atggactacctggtaactgtggggtgccagtgtggggtgctggagctgtggcacgagaac
tatgaggaggcactgcagctattanaaaaggccacggcactgcccacctgcccagctgac
tacttcgacagctcagagcccgtgcaaagacacacgcacatgtccctgaaactgtggtcg
atgcttactgacctgcaggagagccttggcacctcccagtccaagaaggtggagtatgac
tgcattctggacctgagaatcaccagcccctcancggatatccactatgccaagttcatg
gaggagaacaaatactttgaggacagcttcaaggcctatgagcatggcatttcactgttt
gagtggcccaacatgtctgacatctggagcacctacctggccaagttcatcactagctac
tggggcaataacctggaggtggcccaggacctgtttgaacaggcactggacggctgctct
cccaaatactgcaagaccctggacctgctgtgtgcacagctgaagaagaaggggggcctg
gcccgggacaccatggccgtgtatgagtgcgccatcctcgctgtggagtcctcacagcat
tacaacaagttccaactctgcatcacgagggcagccgagatctgcagggtcacacatacc
cgcaggatctaccagaaggccatcgaggtgctgtcagatgagcacacccgggagatgtgc
ctgcagttcgcggagatggggtgcaatcttggagagactgaccagggctgtgccatctac
aacttccgcttgcagatctgtgacccaaggaaaaccagtgccttctgaacaacttggaag
gagttcaaggcatgtcatggcaacgaggacacaatccacgagatgctgcgggtccgttgc
agtgttcaggccacctacaacatgcaggtcaacttcatggcctcccacatgctcaaggtg
ttgagtagtgctactggcaccgtgtctgacctggccccggggcagagctgcatggacagc
atgaggctgctggaacagagggccgagcagctggcgacccaggtcgagcgggaccagcca
ccatgagcccagagcaaaatcttttttgtggggagcaatggtgactgtgaggagctggct
gagatggccaagcaggacaaccctgagaagattcagctgggtgaagatgaagagatggac
ctggagccctgtgaggtgccgctgcagcagtagagtgtcccagtggctctgttcaggaag
ctgaaggaaaactacaccacaaatctgcctaggaggcagcagagctggctcaagtacttt
ggtccttgctgcctggagtttcagttccacattcaacacaggccaggcctgccacttgtg
ggcacttgtgcactgaatcagtag
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