Ochotona princeps (American pika): 101530028
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Entry
101530028 CDS
T07609
Symbol
NRDE2
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101530028 (NRDE2)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
101530028 (NRDE2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_Syf1_CNRKL1_N
TPR_12
AF-4
Motif
Other DBs
NCBI-GeneID:
101530028
NCBI-ProteinID:
XP_004584621
LinkDB
All DBs
Position
20:8295897..8329750
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AA seq
1164 aa
AA seq
DB search
MALFPAFAGVREAAEGGSARKELDWLSNPSFCVESLTSLTHQTEKPAAVVGSGVPLTRDS
LKSESTDERGSDQKPTQASRKKRKERRKKRKHRHGEKPKRKHGRSGSSGSASGSDSEQDG
SSRGSRRGSGKPSPGSDAAADPGLRLVWLEDVQALTGETFRTDKKPDPANWEYKSLYRGD
IARYKRKGDSCLGINPKKQCISWEGASTEKKRSHKQVERYFTKKNVGLMNLDGVAITSKT
LPPSTEPDLFIPVKDAGDVAPPVASWLNPLGIYDQSTTQWLHGQGPSEPESKQPDSQADR
ESSALKAKVEEFNRKIRENPRDIQLWMAFVAFQDEVIRSPGLYAIEEGEQEKRRKSLKLL
LEKKLAVLERAIESNPSSVELKLAKLQLCAEFWEPPALVKEWQKLIFLHPNNAALWQKYL
LFCQSQFSTFSVSKIHSLYGKCLSTLSAVKDGSVLSHPALPGTEEAMFALFVQQCHFLRQ
AGHSEKATSLFQAMIDFTFFKPDSVRDVPTKVQVEFFEPFWDSGEPRAGEKGARGWRAWM
HQQERGGWVVISPDEDDDEPEEDDQEIRDKTLPRWQIWLAAERTREQRHWQPWRPDKTKK
QTEEDCEDPERQVLFDDIGQSLIRLCSPDLQFRLIEAFLQFLGVPSGFVPPASCLYLAMD
ENSIFDHGLHDAKPLTFLSSPFSGVSCVGHMDPLGGRRWTRGHSRDGEDFIRNIFHLVLP
LFSGKEKSELCSSWLQYETAKVIWCLHTKNKKRLKSQGRNCKKLAKNLLKEPENRNNFCL
WKQYAHLEWLLGNTEDARKVFDTALSLVGSKELRNHEPCELSLLYAQLEVEAELSAESRG
SAAARAVHVLTRLTESSPYSPYGGQVLAVHILKARKAYEHALEDSLGEVCASTPAAAASV
ACLVSVARCFMLFQYLTVGIEAAVRIYEQVLVKLKRSVFPEGSGLEDRAGLLGPSRVLEA
VTLMHTGLLRFHMRVSVYPLAPLREALMEALTLYPGNEVLWRSFVQIQNKSHSASKTRRF
FAAITRSAKPLEPWLFAIEAEQMRRKLVETVHRVDGREVHATIPETGLTHRLTALFENAL
RRDDGSQCPLLWRMYLSFLVSLGNKDRSKGVFYKALQKCPWAKALYLDAVEYFPDALQEV
LDLMTEKELRVRLPLEELELLLEG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgttcccggcgtttgcgggcgtgagggaggccgccgagggtgggagcgccagg
aaagaattagactggctgagcaacccaagcttttgtgttgaaagcctgacatcgctgacg
caccagactgagaagccggcagctgtggttggcagcggggtcccactgacaagggattct
ctgaaatcagagagtaccgatgagcgtggcagtgatcaaaagcccacacaagcgagtaga
aagaagaggaaggagagaaggaagaaaaggaagcatcggcatggcgagaagcccaagagg
aagcacgggcggtcgggcagcagcgggtcggcctcgggctcggattccgagcaggacggg
tcctcccgaggcagcaggaggggctctgggaagcccagcccaggaagtgacgctgctgct
gaccctggacttcgccttgtttggcttgaggatgttcaggctctgactggagagaccttc
aggacagacaagaagcctgatcctgccaactgggagtacaagtcgctctaccgaggcgac
atagcaaggtacaagaggaaaggagactcctgccttggcatcaacccaaagaagcagtgt
atatcttgggaaggggcttccacagaaaagaagcgttcccacaagcaggttgagcgctat
ttcacaaagaaaaatgtgggcttgatgaacttggatggtgtcgccattaccagtaagact
ctacccccctccactgagcccgacttgtttatcccggtgaaggacgcgggtgacgtggct
cctcctgttgcaagctggctgaatcctctggggatttatgatcagtcaaccacgcagtgg
ttacacggacagggtccctcagagccagagtcgaagcagcccgactcacaggcggacaga
gagagctctgctctcaaggccaaggttgaggagttcaacaggaaaattcgggagaacccc
cgggatattcagctgtggatggcttttgttgctttccaggatgaggtaatcaggagtccc
ggcctgtatgccatcgaggaaggcgagcaggagaagcggagaaagtccctgaagctgctc
ctggagaagaagctggctgtcctggagcgggccatcgagagcaacccaagcagtgtggag
ctcaagctggcaaagctgcagctctgtgccgagttctgggagccccctgctctggtcaaa
gagtggcagaagctcatcttcttacaccccaataacgcagccctttggcagaagtacctt
ctgttttgccagagccagttcagcaccttttcggtgtcgaagattcacagtctttatgga
aagtgcctgagtactttgtctgctgtgaaggacggcagtgtcttgtctcacccggcgttg
cctggcacggaagaggccatgtttgcactctttgttcagcagtgccacttcctgcggcag
gctggccactcggagaaggccacctctttgtttcaggccatgatcgacttcaccttcttc
aaacctgacagtgtgcgagacgtgcccaccaaagtgcaggtagaattcttcgagcccttc
tgggatagcggcgagccccgagctggggagaagggagcccggggctggagggcgtggatg
caccagcaggagcgcggtggctgggtggtcatcagcccagatgaggatgatgatgaacca
gaagaggatgaccaggagatacgagataagactctgcccaggtggcagatctggcttgct
gctgagcgcacccgagagcagaggcattggcagccctggcgccctgataagaccaagaag
caaacggaggaagactgtgaggaccctgagaggcaggtgttgtttgatgatattggacag
tccctgatcagactttgcagtcccgatcttcagttccggctcatcgaggcctttctccag
ttcctgggcgtaccctctggctttgtgcctcctgcctcctgcctttacctggctatggat
gagaacagcatctttgaccatggacttcatgatgcaaagcccttgacgttcctcagctct
ccgttttccggcgtcagctgtgttggccacatggacccgctgggtggccgtcgatggacc
cgtggtcacagtcgtgacggggaggactttatccgcaacatcttccacctcgtgctgccc
ttgttttcaggcaaggagaagtctgagctgtgtagctcctggctgcagtacgagactgcc
aaggtcatttggtgcctgcacaccaaaaataagaagaggttgaaatcacagggaaggaac
tgcaaaaaactagccaagaatctacttaaggagccagagaaccgcaacaacttttgcctc
tggaagcagtacgcacatctggagtggctgcttggcaacacggaggatgccagaaaagtt
tttgatacagccctgagcctggtgggaagcaaagagctgaggaaccatgaaccctgcgag
cttagcctgctgtacgcccagctggaggtggaggcagagctctcggctgagtcgcgcggg
tccgccgcggcccgggctgtgcacgtgctaacccgactgactgagagcagtccctacagc
ccctacggcgggcaggtcttggccgtgcacatcctgaaggctcggaaggcttacgagcat
gctctagaggacagtctgggggaggtgtgtgcctccactccagctgctgctgcttccgtc
gcctgcctcgtcagcgtggccagatgctttatgctcttccagtacctgactgtagggatc
gaggctgctgtgcggatctatgagcaggtgcttgtcaaactgaagcgctctgtgtttcca
gaaggctctggcctggaggacagggcgggcctcctgggaccgagcagagttcttgaagcc
gtcacgctgatgcacacgggtctgctgcgattccacatgcgagtcagtgtgtaccccctg
gcgcccctgcgagaggccctcatggaggccctcacgctgtatcccggcaacgaggtgctt
tggaggtcattcgtgcagattcagaataagtcccacagcgccagcaagaccagaagattc
tttgctgccatcaccaggtcggccaagcccttggagccttggctgttcgcaattgaagct
gagcaaatgaggcggaagctggtggagactgtgcatagggtggatggcagggaggtccat
gccacgattcctgaaacgggcctgacacaccggctcactgccctgttcgagaacgcactg
cggcgggacgatggcagccagtgtcccctgctgtggaggatgtatttgagttttttggtt
tccttgggaaataaagaccgaagcaaaggtgtgttctacaaagcgcttcagaagtgcccg
tgggccaaggccctgtacctggacgctgtggagtacttccccgatgccctgcaggaggtg
ctggacctcatgacggagaaggagctgcgtgtgcgcctgccgctggaagagctcgagctc
ctgctggagggttag
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