Ochotona princeps (American pika): 101530044
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Entry
101530044 CDS
T07609
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
opi
Ochotona princeps (American pika)
Pathway
opi01524
Platinum drug resistance
opi03430
Mismatch repair
opi05200
Pathways in cancer
opi05210
Colorectal cancer
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101530044 (MSH6)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101530044 (MSH6)
09162 Cancer: specific types
05210 Colorectal cancer
101530044 (MSH6)
09176 Drug resistance: antineoplastic
01524 Platinum drug resistance
101530044 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opi03400
]
101530044 (MSH6)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
101530044 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
WPP
CorA
Motif
Other DBs
NCBI-GeneID:
101530044
NCBI-ProteinID:
XP_004590719
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All DBs
Position
2:complement(59618047..59638749)
Genome browser
AA seq
1357 aa
AA seq
DB search
MSRQSTLFSFFPKSPVLSKPPARASREGGDARAGTGASASPGGDAASSEAGGPGRGPAAD
SASPPRTRSFNGGLRRAAAPAAAPVSCDFSPGDLVWAKMEGYPWWPCLVYNHPFDGTFIR
QKGKSVRIHVQFFDDTPTRGWVAKRLLKPYTGSKSKDAQKGGHFYSSKPEILRAMQRADE
AMSKDKNKRLELAVCDEPSEPEEEEEMEVAAGNASEKSEEDNVIESDEEMQPKVQGSRRS
SRQIKKRRVISDSESDAGGSDVEFKPDAKEEGSSDEISSGVCDSESEGLDSPIKAAPKRK
RMATGNGSLKRKSSKKEVSLTTKRAPGIATETKSTLSAFSAQNCESQSQAGGAADDSGRP
ATWYHETLEWLKKEKRRDAYRRRPDHPDFDASTLHVPEDFLNSCTPGMRKWWQIKAQNFD
LVIFYKVGKFYELYHMDALIGVNELGLVFMKGNWAHSGFPEIAFGRYSDSLVQKGYKVAR
VEQTETPEMMEARCRKMAHISKHDKVVRREICRIITKGTQTYSVLEGDPSENYSKYLLSL
KEKEADSSGHTRVYGVCFVDASLGKFFLGQFSDDRHCSRLRTLVAHYPPVQVLFEKGNLS
METKSVLKGSLSSCLQEALIPGSQFWDAGKTLRTLLEEGYFTEKVNVDSGVMLPQVLKGM
TSESDSIGLTPGENSELTLSALGGCVFYLKKCLIDQELLSMCNFEEYIPLDSDVVSTARP
DAIFKPSQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERIDSCCTPFGKRLLKHWLCAPLC
NPYAISDRLDAIEDLMAVPEKVSEVVDLLKKLPDLERLLSKIHNVGSLLKSQNHPDSRAI
MYEETTYSKKMIIDFLSALEGFKVMCKIIEIMEDAVSDFKSNLLKQVITLQTKNPAARFP
DLTAELHRWDTAFDHDKARKTGLITPKAGFDSDYDQALADIKENEQSLLEYLEKQRSRIG
CRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLASLINAEE
RRDVSLKDCMRRLFRNFDKNYKNWHSAVECIAVLDVLVCLANYSRGGDGPMCRPVILLPG
EDTLPFLELKGSRHPCITKTFFGDDFIPNNILIGCEEDEENHKAYCVLVTGPNMGGKSTL
MRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILKH
ATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNNAVR
LGHMACMVENECEDPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREF
EKMTQSLRLFREIYLATERPTVDAESLRKLLTLTKEL
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atgtcacggcagagcaccctgttcagcttcttccccaaatctccggtgctgagcaagccc
ccggccagggcctcacgcgaaggcggtgacgcccgggcaggcacgggggcctccgcttcc
cccggcggggacgcggcctcgagcgaggctggtgggcctgggcgcgggcccgcggcggac
tcggcgtcgccaccgagaacgagaagcttcaacggaggacttcggagggcagcggcgccc
gctgctgcgcctgtcagttgtgacttttcacctggtgacttggtttgggccaagatggag
ggctacccctggtggccttgtctggtgtacaaccacccctttgatggaacattcatccgc
cagaaggggaaatcggttcgtatccatgtacagttttttgatgacactccaacaagaggc
tgggttgccaagaggctattaaagccgtacacaggttcaaaatcaaaggacgcccagaag
ggaggtcatttttatagttcaaagcctgaaattctaagagcaatgcaacgcgcagatgaa
gccatgagtaaagacaaaaataagaggcttgagttggctgtgtgtgatgagccctcagag
ccagaagaggaggaagagatggaggtagctgcaggtaacgcatcagagaagagtgaagaa
gataatgtaattgagagtgacgaggaaatgcagcctaaggtgcaaggatctaggcgaagc
agccgccaaataaagaaacgaagggtcatttcagactctgagagtgacgctggtggctct
gatgtggaattcaagccagatgctaaggaggaagggagcagtgatgaaatcagcagcggg
gtgtgtgacagtgaaagtgaaggcctggacagccccatcaaagctgcacccaagcgaaag
agaatggcgacgggcaatgggtctcttaaaaggaaaagttcaaagaaagaagtatcgtta
accaccaagcgagcacctggcattgcaacagaaaccaagagcactcttagtgctttttct
gctcagaattgcgaatcccagtcccaggctggcggagcagctgatgatagtggtcgtcct
gctacctggtaccatgaaactttagaatggcttaagaaggagaagagaagagacgcatac
aggaggcggcctgaccaccctgactttgatgcatccacgcttcatgtgcccgaagatttc
cttaattcctgtactcctggcatgaggaagtggtggcagattaaggctcagaactttgat
cttgtcatcttttataaggtggggaagttttatgaactgtatcatatggatgctcttatt
ggtgtgaatgaacttgggctggtattcatgaaaggcaactgggcccattctggctttcct
gaaattgcatttggccgttattcagattccctggtgcagaagggatataaagtagcacga
gttgaacagactgaaaccccagaaatgatggaagcaagatgccgaaagatggcacacata
tctaagcatgataaagtggtcaggagggagatctgtagaatcatcaccaagggtacacag
acctacagtgtgctggaaggtgatccttctgagaactacagtaagtatcttcttagtctg
aaggaaaaagaagcagattcttctggccacactcgtgtgtatggtgtgtgcttcgttgat
gcttcattggggaagtttttcctaggtcagttttcagatgatcgccattgttccagattg
aggactctagtggcacactaccctccagtacaagtcttgtttgagaaaggaaatctctcc
atggaaactaagtcagtcctgaagggttcattatcctcttgtcttcaggaagcgctcatc
ccaggctcccaattttgggatgcaggcaaaactctgaggactctccttgaagaagggtat
tttacagaaaaggtaaacgtggatagtggggtgatgctaccccaggtgcttaagggcatg
acctcagagtctgattccattgggctcacaccaggagagaacagtgagttgaccctctct
gctcttggtggttgtgtcttttacctcaaaaaatgccttattgatcaggagctcttatca
atgtgtaattttgaagaatatattcctttagactctgatgtggtcagtactgccagacct
gatgctatctttaagcccagtcaacggatggtgctagacgcagtgaccttaaacaacttg
gagatttttctgaacgggacaaacggctctactgaagggaccctgttagagaggatcgat
tcttgctgtactccctttggtaagcggctcctcaagcactggctttgtgccccactctgt
aacccttacgctatcagtgatcgtctagatgccatagaagacctcatggctgtgcctgag
aaagtctctgaagttgtagaccttttgaagaagctcccagatcttgaaaggctgctgagt
aaaatccataatgttggctctcttctgaagagccagaaccaccctgacagcagggccata
atgtatgaagaaacgacttacagcaaaaagatgatcatcgatttcctttctgctctggaa
ggatttaaagtcatgtgtaaaatcatagagattatggaagatgctgtcagtgactttaag
tctaacctcctgaagcaggtcattactctgcagaccaaaaatcctgcagcccgctttcct
gacttgactgcagagctgcaccggtgggacacagcttttgaccacgacaaagcacgcaag
actggactgattactcctaaagcaggctttgacagtgactatgaccaagctcttgccgac
ataaaagaaaatgaacagagcctcctggaatacttggagaagcaacgcagtcgaatcggt
tgtaggactatagtttactgggggatcggcaggaatcgttaccagctggaaatcccagag
aatttcactacacgaaacctgccagaagaatatgaattgaaatctaccaagaagggctgt
aaacgatactggaccaaaactattgagaagaagttggccagtctgatcaatgctgaagaa
cggagagatgtatccctgaaggactgcatgcggcgactcttccgtaactttgataaaaac
tacaagaactggcattctgctgtagagtgcatcgccgtgttggatgtcttagtgtgcctg
gctaattatagtcgagggggtgatggccccatgtgccgcccagtaattctgttgccagga
gaagacactcttcccttcttagagctcaaaggatcacgccacccctgcattaccaagaca
ttttttggagatgactttattcctaataacattctgataggctgtgaggaagatgaggaa
aatcacaaagcctactgtgtgcttgttactggaccaaatatgggcggcaagtctaccctc
atgagacaggctggcctattagctgtaatggcccagatgggttgttatgtacctgctgaa
gtgtgtaggctcacaccaattgatagagtgtttactagacttggtgcctcagatagaata
atgtcaggtgaaagcacattttttgttgaactgagtgagacggccagcattcttaagcat
gcaacagcacattctctggttcttgtagatgaattaggaaggggtactgcaacctttgat
gggacagcaatagcaaatgcagttgttaaagaacttgctgaaaccattaagtgtcgtact
ttgttttctactcactatcattcattagtagaagattattctcaaaataacgctgtgcgt
ctaggacatatggcatgcatggtggaaaatgagtgtgaagaccccagtcaggagactatt
acctttctctataaattcattaagggagcttgtcctaagagttatggctttaatgcagca
aggcttgctaatcttccagaggaggtcattcaaaagggacatagaaaagcaagagaattt
gagaaaatgactcagtcactacgattatttagggaaatttacctggctactgagaggcca
actgtagatgctgaatctctccgtaagttgctgactttgactaaagaattatag
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