Ochotona princeps (American pika): 101530245
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Entry
101530245 CDS
T07609
Symbol
CIC
Name
(RefSeq) protein capicua homolog isoform X5
KO
K20225
capicua transcriptional repressor
Organism
opi
Ochotona princeps (American pika)
Pathway
opi05017
Spinocerebellar ataxia
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05017 Spinocerebellar ataxia
101530245 (CIC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101530245 (CIC)
Transcription factors [BR:
opi03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
101530245 (CIC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
101530245
NCBI-ProteinID:
XP_004598042
LinkDB
All DBs
Position
5:6005290..6027484
Genome browser
AA seq
1598 aa
AA seq
DB search
MYSAHRPVMPASGAASRGLGMFVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQ
PASHPVASSQSKEPAESAAVAHEQPPGGTGNADPGRPPGATCPESPGPGPLHTLGVVEPG
KGPPPATEEETSVPPGEPRLDSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKE
RDSSSEKDGRSPNKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYA
LGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSEAKPTSLGLAGGHKETRERSM
SETGTAAAPGVSSELLSVAAQTLLSSDTKASGNSSCGPDRLHTVGGSGSARPRAFSHSGV
HGLDGGEDSQALQELTQMVSGPTSYSGPKPSTQYGAPGSFTAPGEAGALAASGRPPLLPT
RTSRSQRAASEDMTSDEERMVICEEEGDDDVIADDGFSTTDIDLKCKERVTDSESGDSSG
EDPDGNKSFGRKVFSPVIRSSFTHCRPTLDPEPPGPPDPPTAFSKGYCPAPSSSSAASST
SAAASYSLGSGTFKAQEPGQGSAAGPLRPPPPGTGGPSTPSKAARFLPADPAPFRRKRPE
SVGGLEPPGPSVIAAPPSGGGSILQTLALPPGKEEREGSGARVPSAPAPSLGYGAPAAPL
SRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAETSPADTAGTRTEMSTGSRVPGGSPLG
VSLVYSDKKAAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPAPPAVQFIAQG
TPGGGTTAGSGAGAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAPAP
TPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTPGIPILQSVPSAPPPKAQSVS
PVQAPPPSGSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSPPFSVPVQNGAQPPSKII
QLTPVSVSTPSGLGPPVSPAPLPGPTSQPQKVLLPSSTRITYVQSAGSHALPLGTSSGSS
QAGAVTSYGPSSSVALGFTSLGPSGPAFVQPLLSGQAPLLAPGQVGVSPVPSPQLPPACT
APGGPVITAFYPGSPVPTSSAPLAQPSQAPPSLVYTVATSTTPPAATILPKGPSAPATAT
PAPSSPFPSATAGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFEAGASGRPGPAPR
QPLEPGPPREPTTLESELEGQPTQPAPPPPPETWTPTARSSPPPTEERPGTKGPETTASK
FPSSSSDWRVPGQGLESRGEPPTPPSPAPAAASGSSSEGSSGRVAGDTPERKEVASAGKK
VKVRPPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSY
RKKRKNSTDLDSAPEDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTGTETEDVL
GELEYDKVPYSSLRRTLDQRRALVMQLFQDHGFFPSAQATAAFQARYADIFPSKVCLQLK
IREVRQKIMQAATPTEQPPGTEAPLPVPPPAGTAAAPAPTPSPAGGPDPSSPGSDSGTAQ
AAPQLPPPPEPGPGQPGWEGPPQSSPPPSGPSTAAAGR
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atgtattcggcccacaggcccgtgatgcccgcgtccggcgcggcttcgcgtggtctcggc
atgttcgtgtggacgaatgtggaacctcgctctgtggccgtgtttccctggcactcctta
gtacccttcctggcacccagccagcctgacccctctgtgcagccaagtgaggcccagcaa
cctgccagccacccggtagcttccagccagagcaaagaacctgctgagtcggcagctgtt
gctcacgagcagccaccaggtgggacaggaaatgctgaccctgggcggccccctggagcc
acgtgccctgagagtccagggcctggacccctgcacactttgggggtggtggaacccggc
aagggtccccctcctgccactgaggaggagacctctgtcccccctggagagcctcggctg
gacagcgagacggaaagtgaccatgatgatgccttcctctccatcatgtctcctgagatc
cagttgcctctgccacccggcaaacgccggacccagtcactcagcgctctgcccaaggag
cgggactcatcctctgagaaggatggacggagccccaataagcgagagaaggaccacatc
cggcggcccatgaacgccttcatgatcttcagcaaacggcaccgggccctggtccaccag
cgccacccgaaccaggacaaccggaccgtcagcaagatccttggcgagtggtggtacgcc
ctggggcccaaggagaagcagaagtaccatgatctggccttccaggtgaaggaagcccac
ttcaaggcccacccagattggaagtggtgcaacaaggaccgaaagaagtccagctcggag
gccaagcccacgagtctggggctggcaggagggcacaaggagacgcgggagcggagcatg
tcggagacgggcactgccgctgcccccggggtgtcatctgaactgctgtctgtcgcagcc
cagacgctcctgagctcggacaccaaggcttcaggcaacagctcttgtgggccggaccgt
ctgcacactgttggggggtctggctcggcccggccccgagccttctcccacagtggggtg
catggcctagacggcggggaagacagtcaggcgctgcaggagctgactcagatggtgtct
ggccctacatcatactctggcccaaagccttccactcagtatggcgctccaggctccttc
acagcccctggggaagcaggggccttggcagccagtggacggcctccactactgcccacc
cgaacctcgcgttcccagcgtgcggccagtgaggacatgaccagtgatgaggagcgcatg
gtcatctgtgaagaggaaggggatgatgatgtcattgctgatgatggcttcagcaccact
gacattgatctcaagtgcaaggagcgggtgaccgacagtgagagtggagacagctctggg
gaagacccagatggcaacaagagctttggtcggaaggtgttctcgcctgtgatccgctcc
tcttttacccactgccgtcccacgctggaccctgagccccccgggcccccagatccaccc
accgccttcagcaaaggctactgtcccgccccatcctcttcctcggctgcctcatcaacc
tcagcagctgcatcctattctctgggctcaggaaccttcaaagcgcaggagccgggtcag
ggcagtgcggcaggcccactccggcctccaccccctgggactgggggcccatcgactcct
tccaaggctgcccgattcctcccagcggatcctgcccccttccggagaaagagacctgag
agtgtagggggcctggagccaccaggtccctcagtcattgcagcgcctcccagtggagga
gggagcattctgcagaccctggccctgccccccggcaaggaagagcgggaaggcagtgga
gcccgagtaccctcagccccagccccctcattaggttatggggccccagcagcccctctg
tcccgtcctgctgccaccatggtcaccaacgtggtgcggccggtcagtagcactcctgtg
cccattgcttctaagcccttccccacctctggccgggctgagacatctccagctgacacg
gcaggtaccaggactgaaatgagcaccgggtccagggtgcctggaggctccccgctgggg
gtcagtttagtgtattcagacaaaaaggcagcggcagccacctcaccagccccacacttg
gtggctggacccctactgggcactgtggggaaggcacctgccactgttaccaacctgttg
gtgggcaccccgggctatggggcccctgcacccccagctgttcagttcattgcccagggg
acccctggtggtgggaccactgcaggctcaggagcaggtgctgggagtggccctaatggg
ccagttcccctgggcatcctgcaaccaggtgccctgggcaaggctgggggcatcacccag
gtgcagtacatcctgcccacgctgccccagcagcttcaagtggcacctgccccagcacca
acccctgggactaaggcagcggctcccagcggccctgcacccaccaccagcatccgtttc
accctcccgccgggcacctccaccaacggcaaggtcctggccgccactgcacccactcct
ggcatccctatcctgcagtctgtaccctccgccccaccccccaaagcccagtcagtttct
cccgtgcaggccccgcccccaagtggctcagcccaactgctccctgggaaggtcctagtg
cccctggccgccccgagcatgtcagtgcggggtggcggggctggccagccactgcccctg
gtgagcccacccttttcagtccctgtgcagaacggcgcccagccacccagcaagatcatc
cagctaaccccagtgtcagtgagcacgcccagcggcttggggccccccgtgagcccagct
ccacttcctgggcccacctcgcagccccagaaggtcctgctgccttcttccacaagaatc
acctatgtgcagtcggcgggtagccatgcgctgcctctgggcaccagctctggctctagc
caagctggagcagtcacctcgtacgggccctcgagctctgtggctctgggcttcacctcg
cttgggcccagtggccctgcctttgtgcagcccctgctctcaggccaagccccactactg
gctcctggccaggtgggcgtgtcacctgtgcccagcccccagctgcctcccgcctgcaca
gcccccggaggtcctgtcatcacagcattttaccccggcagccctgtacccacctcctca
gcacccctggcccagccatcccaggcacccccaagcctggtctacactgtggccaccagt
accaccccaccggctgccaccattctgcccaagggcccgtcagctcccgccactgccacc
cctgctccttcgagtcctttccctagtgccacagcaggttccatgacgtacagcctagtg
gcccccaaggcccagcggcccagccccaaggccccccagaaagtgaaggccgccattgcc
agcattcccgtgggctcctttgaggcaggtgcctctggacggcctggccctgcaccccga
cagcctctggagcctggcccaccccgtgaaccgaccacactcgagtctgagctcgagggg
cagcccacccaaccagcccctccaccacccccagagacctggactcccacagcccggagc
agccccccacccactgaggagcggcctggcaccaagggccctgagaccacggccagcaag
ttccccagttcatcttcagactggcgcgtccctgggcagggcctggagagtcgtggcgag
cctcccaccccgcccagccccgcccctgccgcagcctccgggagcagcagtgaaggaagc
agtgggagggtagctggggacacccctgagcgaaaggaagtggccagtgctggcaagaag
gtgaaggtgcggccccccccactcaagaagacatttgactccgtggacaacagggtcctg
tcagaggtggattttgaggagcgctttgctgagcttccagagtttcggcctgaagaggtg
ctgccctcgcccacgctgcagtccctggccacctcaccccgggccatcctgggctcatac
cgcaagaagaggaaaaactccactgatctggattcggcccctgaggaccccacctcgccc
aagcgcaagatgagaagacgctccagctgcagctcggagcccaacacccccaagagtgcc
aagtgtgagggggacatcttcaccttcgaccgcacaggcacagaaaccgaagatgtgctt
ggggagctggagtatgacaaggtgccatactcgtcgctgcgccgcaccctggaccaacgc
cgggccctggtcatgcagctcttccaggaccacggcttcttcccatcggcccaggccacg
gcagccttccaggcccgctatgcagacatcttcccctccaaggtctgtctacagctgaag
atccgtgaggtgcgccagaagatcatgcaggcggccacgcccacagagcagcctcctggg
actgaggcccccctccctgtcccgccccctgctggcactgctgctgcccctgcccccact
cccagcccagctgggggccctgacccctcctcacctggctcggactcgggcacagcccaa
gctgccccgcaactgcctccacccccagagccagggcctggacagcctggctgggagggg
cccccgcagtcctctccgcctccttcaggcccctccacagctgctgcaggcaggtga
DBGET
integrated database retrieval system
