Ochotona princeps (American pika): 101530438
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Entry
101530438 CDS
T07609
Symbol
CALCOCO1
Name
(RefSeq) LOW QUALITY PROTEIN: calcium-binding and coiled-coil domain-containing protein 1
KO
K25828
calcium-binding and coiled-coil domain-containing protein 1
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101530438 (CALCOCO1)
04131 Membrane trafficking [BR:
opi04131
]
101530438 (CALCOCO1)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
Others
101530438 (CALCOCO1)
Membrane trafficking [BR:
opi04131
]
Autophagy
ER-phagy
ER-phagy recepters
101530438 (CALCOCO1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CALCOCO1
SKICH
Zn-C2H2_12
DUF3450
Mod_r
APG6_N
ACBP4_C
Pox_A8
LPP
DUF3287
Pox_A_type_inc
zf-Tbcl_FmdE
Motif
Other DBs
NCBI-GeneID:
101530438
NCBI-ProteinID:
XP_004583218
LinkDB
All DBs
Position
4:53662027..53679269
Genome browser
AA seq
690 aa
AA seq
DB search
MQESSLSRAPSRGGVSFLNVARTYIPNTKVECHYTLPPGTIPSASDWIGIFKVEAACVRD
YHTFVWSSVPENPASGSPIHASVQFQASYLPKPGAQLYQFRYVNRQGRVCGQSPPFQFRE
PRPMDELVTLEEADGGSDILLVVPKATVLQNQLDESQQERNDLMQRKLHLEGQVTELRSR
VQELESALATARQEHAELLEQYKGLSRSHGELTEERDVLSRQQGDHVARILELEDDIQTI
SEKVLTKEVELDRXGDLPTRSFSSFLMTSLFQLPVASRHHSQAELQVTQEESRRLGLELQ
EAKGRQEELGAQVQRLKDKVVQMKDALSQAQQRVAELEPLKEQLRGAQELAASSQQKAAL
LGEELASAAGARDRTISELHRSRLEVAEVNGRLAELSLHLKEEKCQWSTERAGLLQSVEA
EKDKILKLSAEVLRLEKALQEERAQNQVCKTELAREKDSSLVQLSESKRELTELRSALRV
LQKEKEQLQEEKQELLEYMRKLEARLEKVADEKWSEDAATEDEEATAGLSCPTALTDSEE
DESPEDMRLPAYRLCERGDPGSPAGPGEASPLVVISQPAPITPHLSAPAEDSSSDSEAED
EKSVLMAAVQSGGEEANLLLPELGSAFYDMASGFSVSSLTEASAGGSATPPWKECPICKE
RFPAESDKDALEDHMDGHFFFSTQDPFTFE
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagtcctctctcagccgggctccttcccggggtggtgtcagcttcctgaatgtc
gcccggacctacatccccaacaccaaggtggaatgtcactacacccttcctccaggcacc
atacccagtgccagtgactggattggcatcttcaaggtggaggctgcgtgcgtccgggat
taccacacattcgtatggtcatcggtgcctgagaatccagctagtggttctcccatccat
gccagtgtccagttccaagccagctacctgcccaaaccgggagcccagctctaccagttc
cgctacgtgaaccgccagggccgagtgtgcgggcagagcccccctttccagttccgagag
ccaaggcccatggatgagctggtgaccctggaggaggctgacggaggctctgacatcctg
ctggttgtgcccaaggccactgtcctgcagaaccagctggatgagagccaacaagaacgg
aatgacctgatgcagcggaagctgcacctggaggggcaggtgacggagctgaggagccgc
gtgcaggagctcgagtcggcgttggcgacagccagacaggagcatgcggagctgctggag
cagtacaagggcctttcgcggtcccatggggagctcacagaggagagggacgtgctcagc
cggcagcagggagaccacgtggcgcgcatcctggagctggaggacgacatccagaccatc
agtgagaaagtgctgaccaaggaggtggagctggacaggtgaggggacctccccacccgc
tccttctcttcctttcttatgacctccttgttccagcttcctgtggcaagcagacaccac
tcccaagctgagctccaagtaacacaagaggagagccggcgcctcggcttggagctgcag
gaagccaagggccggcaggaggagctgggtgcacaggtgcagcgcctgaaggacaaggtg
gtgcagatgaaggatgccctcagccaggcccagcagcgcgtggctgagctggagcctctg
aaagagcagcttcgaggggcccaggagctggcagcctcgagtcagcagaaggctgcactt
ctcggggaggagctggccagcgctgcgggagcccgggaccgcaccatctccgagctgcac
cgcagccgcctggaggtggctgaagtcaatgggcggctggcggagctcagcctgcacctg
aaggaggagaagtgccagtggagcacggagcgggcagggctgctgcagagtgtggaggcc
gagaaggacaagatcctgaagctgagcgcagaggtccttcgcctggagaaggcgctgcag
gaggagagggcccagaaccaagtgtgcaagacagaactggcccgggagaaagattccagc
ctggtgcagctgtcagagagcaagcgggagctgacagagctgcgctcagccctgcgtgtg
ctgcagaaggagaaggagcagctgcaggaggagaagcaggagctgctggagtacatgagg
aagctggaggcccgcctagagaaggtggctgatgagaagtggagcgaagatgcggctact
gaggacgaggaggccactgcggggctgagctgcccgactgcactgacagactccgaagaa
gacgagtcaccagaagacatgcgcctccctgcctaccgcctgtgcgagcgtggagaccca
ggctctcctgccgggccgggagaagcatcgcccctagttgtcatcagccagccggcccct
atcactccccacctctcagcgcctgctgaggacagtagctcggattcggaggctgaagat
gagaagtcagtcctgatggcagctgtgcagagtgggggcgaagaggccaacctgctgctt
cctgaactgggcagtgctttctacgacatggccagtggcttctcagtgagttccctaacc
gaggctagcgcggggggcagcgccacacccccctggaaggagtgtcccatctgcaaggaa
cgcttccctgccgagagcgacaaggatgccctggaggaccacatggatggacacttcttt
ttcagcacccaggaccccttcaccttcgagtga
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