Ochotona princeps (American pika): 101531502
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Entry
101531502 CDS
T07609
Symbol
ERCC6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
101531502 (ERCC6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101531502 (ERCC6)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101531502 (ERCC6)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101531502 (ERCC6)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
101531502 (ERCC6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
101531502
NCBI-ProteinID:
XP_004583378
LinkDB
All DBs
Position
18:complement(66144044..66211209)
Genome browser
AA seq
1493 aa
AA seq
DB search
MSDGGLAHSSPTLERDCLQNEHVQKDGGAAVREKDSGETEVDLGVEGRLPSCSSSEGPST
SAEGSVPNAARRGPALLHIDRHQIQAVEPSAQAVELQGLGVDVYDQDVLEQGVLQQVDSA
IHKASHAAQLADAEKEYGSVLDDLASCTTSLRQINKIIEQLSPQAATNKDISRKLDSVKR
QKYNKEQQLRKITAKQKRLQAILGGAEVRVELDHARLEEEEDAEPGPSSLGSMLMPAQES
AWEELIRTGQMTPFGTQIQPKPEKQPRKIMLDEASGFEKYLAEQAKLSFERRKRVRGKRA
ARQAPTPVTAVSVPAAGEGKPKPGSQTLSKADRRLQKHMRKLQKRAAQFQGKVVPRPRRK
PLEAEVQPRAAGHSEGEESEYIPTEEEDEEEDEEEAAAGVDLSGDGTDYELKPLPCGRRR
QKKAAAQQVDEDFFPSSEEDVDAPAAGPGKGRKAMRCRDDGDESYYRQRLRRWNKLRLQD
RKERAQAEADSEESDAEFDEGFRVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMG
LGKTIQIIAFLASLSYSKIRTRGSNYRFEGLGPALIVCPTTVMHQWVKEFHTWWPPFRVA
ILHETGSYTHKKEKLVRDIAHCHGILITSYSYIRLMQDDISRHNWHYVILDEGHKIRNPN
AAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGG
YSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKV
YQNFIDSKEVYAILNGEMQIFSGLIALRKICNHPDLFSGGPKNCSSLPYDGLEEEQFGYW
KRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLHILEAFLRARKYSYLKMDGTTTVASRQ
PLITQFNEDASIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKK
QVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDAAQS
TETSAIFAGTGSDVQTPRRPLKRKSRPALGTDQDAPKCRTFLRPSPLPEGAALPAEKPAG
TGAEVHTVASDEGGSAKGDPHTSASVTPCGDRMAEEGLVASGPEDSEVGSGSGKHQNALG
SSQTSSGLCAEGSGDTKSDLSSKTKGSQAELLWENERPETVFSKHKSKTKHQTGAAEETP
EQHETPKPKAKSHRPHRDAKFEGTRISHLVKQRRYHQQDDGDTDEAAHRSTDDYVLEKLF
RKSGGVHSVMRHDAIMDGASPDYVLVEAEANRVAQDALKALRLSRQRCLGAGSGVPTWTG
HRGASGAPAGVRSRFGQKRNSHLPVQRAVEKCQDGVTVPEGKDRGSGHFSGHGEEVESSS
VAPSSSSLLAKMRARNHLIVPERLESEDRHVPGAAAPAPSATEHDELLVEVRNFVAFQAR
VDGQASTQEILREFESRLSASQSCVFRELLRNLCTFHRTPGGEGIWKLKPQYC
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgggggactcgcccactcaagtccgaccctggagcgagactgtctacaaaat
gagcacgtccagaaggatggaggagcagcagtgcgggagaaggacagcggggagacggag
gtggacttgggtgtggagggacgcctgccctcctgctcctccagtgagggcccctccacc
tctgccgaggggagcgtgccgaacgctgcacggagagggccggccctgctgcacatcgac
agacatcagatccaggcggtggagcccagcgcgcaggccgtggagctgcagggcctgggg
gtggacgtctacgaccaggatgtgctggagcaaggcgtgctgcagcaggtggacagcgcc
atccacaaggccagccacgcggcccaactcgctgacgctgagaaggagtacggctcggtc
ctggatgacctcgcgtcctgcacaacatccctaaggcaaatcaataaaattattgaacaa
cttagccctcaagctgccaccaacaaagacatcagcaggaaactagattctgtcaagcga
cagaagtataataaggagcagcaactgaggaagatcacggccaaacaaaagcgtttgcag
gccatcctaggaggcgctgaggtcagagttgagctggatcacgccaggctggaggaggag
gaggatgcagagccggggccgtccagcctgggcagcatgctcatgcctgcgcaggagagc
gcctgggaggagctcatccgcactggccagatgacgccatttggcacccagatccagccg
aagccggagaagcagccccggaagatcatgctcgacgaggcgtcaggcttcgagaagtac
ctggccgagcaagcgaagctgtcctttgagaggaggaagcgagtgcggggcaaacgggca
gcccgacaggccccaaccccggtcactgcggtctcggtcccagcggccggcgaagggaag
cccaagccggggagccaaacgctgtccaaggcggacaggcgcctgcagaagcacatgaga
aagctgcagaagcgggccgcgcaattccagggcaaggtggtgccgcggccgcggaggaag
ccgctggaggccgaggtgcagccccgagcagcgggccactcagagggagaggagtccgag
tacatccccaccgaggaggaggacgaggaggaggacgaggaggaggcggcggcaggggtg
gacctgtctggagacggcactgactacgagctgaagcccctgccctgcggccgtaggcgg
cagaagaaagccgcagcgcagcaggtggacgaggacttcttccccagttccgaggaggac
gtggatgccccagcagcgggcccagggaaaggtcgcaaggcgatgaggtgccgcgacgat
ggcgacgaaagttactaccggcagcggttaaggagatggaacaaactgaggctgcaggac
agaaaggagcgtgcgcaggccgaggccgactccgaggagagcgacgccgagtttgacgag
ggcttccgcgtgccgggctttctgttcaagaagctgttcaagtaccagcagacaggtgtt
cggtggctgtgggaattgcactgccagcaggcaggaggaattctgggagacgagatggga
ttgggcaagaccatccagataattgccttcttggcaagtctgagctacagcaagatcagg
actcgcggttccaattacaggtttgaggggctgggtccagcactcatcgtgtgcccgacg
acagtgatgcaccagtgggtgaaggagttccacacgtggtggcctccgttccgagtggcg
attctgcatgaaacgggctcctacacccacaaaaaggagaaactagttcgagatattgct
cactgtcatgggattctgatcacttcttactcctacatccgactgatgcaagatgatatt
agcaggcacaactggcactatgtgatcttggatgaaggacacaaaattcggaatccaaac
gccgctgtcacccttgcctgcaagcagttccgcaccccacaccgcatcatcctgtccggc
tcgccaatgcagaacaacctccgggagctgtggtccctcttcgacttcatcttccccggg
aagctgggcaccctgcctgtgttcatggagcagttctcagtgcccatcaccatggggggc
tactccaatgcctccccagtgcaggtgaaaactgcttacaagtgcgcctgtgtcttacga
gacaccatcaacccgtacctgctgcggaggatgaaatcagatgtcaagatgagcctttct
ttgccagacaaaaacgaacaggtcttattttgccgtctcacagatgagcaacataaagtc
taccagaattttatcgattccaaagaagtgtacgccatccttaatggagagatgcagatc
ttctctggactcatcgccctccgcaaaatctgcaaccaccctgatctcttctcggggggc
cccaagaactgcagcagtctcccgtatgacggacttgaggaagagcagttcgggtactgg
aaacgctctgggaagatgattgttgttgagtcgttgttgaaaatctggcacaagcagggc
cagcgagtgttgctattctcccagtcaagacagatgttgcacatcctcgaggcattcctc
agagcccggaagtattcctatctcaagatggatggtaccacgactgtggcgtcgagacaa
cccttgattacccagttcaatgaggatgcgtccatatttgtgtttcttttgacgacgcgc
gtgggcgggctgggcgtcaacctgactggagccaacagagtcatcatctacgacccagac
tggaacccgagcaccgacacgcaggcccgggagcgtgcctggagaataggccagaagaag
caggtgaccgtgtaccggctgctgactgctggcaccattgaagagaagatctaccaccgg
caaatcttcaagcagtttctgacgaacagagtgctgaaggacccgaagcaaaggcggttc
ttcaagtccaacgacctgtatgagctgttcaccctgagcagtcccgacgcggcccagagc
accgagacgagcgccatctttgcaggaaccggttcagacgtgcagacccccaggcgcccc
ttaaaacgcaagagtcggccagccttggggacagaccaggacgcccccaaatgcagaacg
ttcctgcggcccagtccattgccagagggtgctgcgttgcccgcagagaagcctgcaggg
actggggcagaagtgcacaccgtggcttccgatgagggcgggtcagcgaaaggtgacccg
cacaccagtgccagcgtaactccctgtggtgacaggatggcagaagaggggcttgtggcg
tctggaccagaggactctgaggtgggcagcggcagtgggaaacatcagaatgctctggga
agcagccagacctcctccgggctgtgcgccgaggggagtggagacaccaagtcggacctg
tcctccaaaaccaaaggctctcaggctgagctgctgtgggagaacgaaagaccagaaact
gttttctctaagcacaagtcaaaaaccaagcatcagactggggcagcagaggagaccccc
gagcaacatgagacgccaaagccgaaggcgaagagccacaggccccaccgggacgccaag
ttcgagggcactcggatctcccacctggtgaagcagaggcgctaccaccagcaggacgat
ggcgacacggatgaggctgcgcaccgcagcactgacgactacgtgctggagaagctcttc
aggaagtcagggggtgtacacagtgtcatgaggcatgatgccatcatggacggggccagc
cccgactacgtgctggtggaggccgaagccaaccgggtggcccaggacgccctcaaagcc
ctgaggctctcccggcagcggtgtctgggtgctgggtcaggggttcccacctggaccggc
cacaggggagcgtcaggggcaccggcaggagtaaggagcaggtttggacagaagaggaat
tctcacctacctgtgcagcgtgccgtggagaaatgccaggatggtgtcacagtgccggag
gggaaggaccgaggctctggacacttcagcggacatggagaggaagtcgagtcttcctcc
gttgcgccttcctcatcttcactgttggccaagatgcgagcgagaaaccacctaattgtg
ccggagcggctggagagcgaggacagacatgtcccgggtgccgccgccccggcccccagc
gccacggagcacgatgagctgctggtggaggtgaggaacttcgtggccttccaggcccgc
gtggacggccaggccagcactcaggagatcctgagggagtttgaatccaggctgtcggca
tcgcagtcctgtgtcttccgggaactgctgagaaatctctgcactttccatcgaacgccg
ggaggcgagggcatttggaagctcaagccccagtactgctga
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integrated database retrieval system
