Ochotona princeps (American pika): 101532362
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Entry
101532362 CDS
T07609
Symbol
COL1A2
Name
(RefSeq) collagen alpha-2(I) chain
KO
K06236
collagen type I alpha
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04151
PI3K-Akt signaling pathway
opi04510
Focal adhesion
opi04512
ECM-receptor interaction
opi04611
Platelet activation
opi04820
Cytoskeleton in muscle cells
opi04926
Relaxin signaling pathway
opi04933
AGE-RAGE signaling pathway in diabetic complications
opi04974
Protein digestion and absorption
opi05146
Amoebiasis
opi05165
Human papillomavirus infection
opi05205
Proteoglycans in cancer
opi05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101532362 (COL1A2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101532362 (COL1A2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101532362 (COL1A2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101532362 (COL1A2)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
101532362 (COL1A2)
09152 Endocrine system
04926 Relaxin signaling pathway
101532362 (COL1A2)
09154 Digestive system
04974 Protein digestion and absorption
101532362 (COL1A2)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
101532362 (COL1A2)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101532362 (COL1A2)
09174 Infectious disease: parasitic
05146 Amoebiasis
101532362 (COL1A2)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
101532362 (COL1A2)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101532362 (COL1A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
opi00536
]
101532362 (COL1A2)
Glycosaminoglycan binding proteins [BR:
opi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101532362 (COL1A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
RNPP_C
Motif
Other DBs
NCBI-GeneID:
101532362
NCBI-ProteinID:
XP_004582363
LinkDB
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Position
10:complement(32785053..32820772)
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AA seq
1365 aa
AA seq
DB search
MLSFVDTRTLLLLAAASCLATCQSLQEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPPG
PAGPPGPPGPPGLGGNFAAQYDGKGVGMGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEP
GEPGQTGPAGARGPPGAPGKAGEDGHPGKPGRPGERGIMGPQGARGFPGTPGLPGFKGIR
GHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSV
GPVGPAGPIGSAGPPGFPGAPGPKGEIGPVGNPGPSGPAGPRGEVGLPGVSGPVGPPGNP
GTNGLTGAKGAAGLPGVAGAPGLPGPRGLPGPVGAAGATGARGLVGEPGPAGSKGESGNK
GEPGSAGPQGPPGPSGEEGKRGSTGEPGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPP
GSRGSTGPAGVRGPNGDSGRPGEPGLVGPRGLPGSPGNVGPAGKEGPVGLPGIDGRPGPI
GPAGARGEPGNIGFPGPKGPSGDAGKSGDKGHPGLAGARGAPGPDGNNGAQGPPGPQGVQ
GGKGEQGPAGPPGFQGLPGPSGPAGEVGKPGERGLPGEFGLPGPAGARGERGPPGESGAA
GPPGPIGSRGPSGPPGPDGNKGEPGAVGAPGNAGASGPGGLPGERGAAGIPGGKGEKGET
GLRGEVGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPA
GPNGFAGPAGAAGQPGAKGERGTKGPKGENGVVGPTGPVGAAGPSGPNGPPGPVGGRGDG
GPPGMTGFPGAAGRTGPPGPSGITGPPGPPGAAGKEGLRGPRGDQGPVGRTGEPGAAGPP
GFAGEKGPSGEAGTAGPPGTPGPQGLLGPPGILGLPGTRGERGLPGVAGALGEPGPLGVA
GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGSDGPPGRDGQPGHKGERGYPGNAGPAGAA
GAPGPQGSVGPTGKHGNRGEPGPAGSVGPVGAVGPRGPSGPQGIRGDKGEPGDKGPRGLP
GLKGHNGLQGLPGLAGQHGDQGAPGAVGPAGPRGPAGPTGPAGKDGRSGHPGTVGPAGVR
GSQGSQGPAGPPGPPGPPGPPGASGGGYDFGYDGDFYRADQPRSPPSLRPKDYEVDATLK
SLNNQIETLLTPEGSRKNPARTCRDLRLSHPEWSSGYYWIDPNQGCTMDAIKVYCDFSSG
ETCIQAQPDSVAVKNWYKNSKPKKHVWLGEINGGTQFEYNTEGVTSKEMATQLAFMRLLA
NHASQNITYHCKNSIAYMDAETGSLNKAVILQGSNDVELVAEGNSRFTYTVLVDGCSKKT
NEWGKTIIEYKTNKPSRLPFLDIAPLDIGGSDQELYVDIGPVCFK
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgctcagctttgtggacacgcggaccctgctgctgctcgcagcggcgtcgtgcctagca
acctgccagtctttacaagaggaaacggtaagaaagggcccagctggagatagaggacca
cgtggagaaaggggtccaccaggccccccaggcagagacggtgaagatggtccccctgga
cctgctggcccacctggtcctcccggcccccctggtctcggcgggaactttgctgctcag
tatgatggaaaaggagttggaatgggcccaggaccaatgggtttaatgggacccagaggc
cctcctggtgcagctggagcccctggaccccaaggtttccaaggacctgctggagagcct
ggtgaacctggtcagactggccccgcaggagcccgaggtccacctggagcccctggcaag
gctggagaggatggtcaccctggaaaacccggaagacctggtgagagaggaattatggga
ccacagggtgctcgcggcttccctggaactcctggacttcctggcttcaagggcattagg
ggacacaatggtctggatggattgaaaggacagcctggtgctcctggtgtgaagggtgaa
cctggtgcccctggtgaaaatggaactccaggtcaaacaggagcccgggggcttcctggt
gagcgaggacgtgttggtgcccctggcccagctggagcccgtggcagcgatggcagtgtt
ggtcctgtgggtcctgctggtcccattgggtcggctggccctccaggcttcccaggtgcc
cctggtcccaagggtgaaattggacctgttggtaaccctggcccttctggccctgcgggt
ccccgtggtgaagtgggtcttccaggtgtttctggccctgttggacctcctggtaaccct
ggaacaaacggccttactggtgccaagggtgcagctggccttcctggtgtcgctggggct
cctggtctccctggccctcgtggtctccctggccctgtgggtgctgctggtgctactggt
gcccgaggacttgttggtgagcctggtccagccggctccaaaggagagagtggtaacaag
ggtgagcctggttctgctggtccccaaggtccccctgggcccagtggagaagaaggaaag
agaggtagcactggagaacctggctctgcaggccccccaggacctcccgggctgaggggt
agtcctggttctcgcggccttcccggtgctgatggcagagctggtgtgatgggccctcct
ggtagccgtggttcaactggccctgctggagtccgaggccccaatggagattccggtcgt
cctggggagcctggtctcgtgggacccagaggtcttcccggctcccctggaaacgttggc
ccagccggcaaagaagggcctgtgggcctccctggtattgatggcaggcctggtccaatt
ggccccgctggagcaagaggagagcctggtaacatcggattccctggacccaaaggcccc
agtggtgatgctggaaaaagcggtgacaagggccatcccggtcttgctggtgctcggggt
gctccaggtcctgacggaaacaatggtgctcagggccctcctggaccacagggtgtgcaa
ggtggaaaaggtgaacagggtcctgccggtcccccaggcttccagggtctgcctggcccc
tcgggtccagctggtgaggttggcaagccaggagaaaggggtctccctggtgaatttggc
ctccctggtcccgctggtgctagaggggagcgcggtcctcctggggagagcggtgctgct
ggtcctcctggtcctattgggagccggggtccttctggacctccagggcctgatggaaac
aagggtgaacctggtgcggttggtgctccgggcaatgctggtgcatctgggcctggtggc
ctcccaggagagaggggtgctgctggcattcctggaggcaagggagaaaagggtgaaacc
ggactcagaggtgaagttggtaaccctggtagagatggtgctcggggtgctcctggtgct
gttggcgcccctggtcctgctggagccactggtgatcggggtgaagctggtgctgctggc
cctgctggtcctgccggtcctcggggtagtcctggtgaacgtggtgaggttggtcccgct
ggcccgaatggatttgctggtcccgctggtgctgctggtcaacctggtgctaaaggagag
agaggaaccaaaggtcccaagggtgaaaatggtgttgtcggtcccactggccctgttgga
gcggctggcccatccggtccaaatggccctcctggtcctgttggaggtcgtggtgatgga
ggccctcctggtatgactggtttccctggtgctgctggacggaccggaccccctggaccc
tctggtatcactggccctcctggccctcctggtgctgctggtaaagaaggccttcgtggt
cctcgtggtgaccaaggtccagtcggccgaactggagaaccaggtgcagctggtccccct
ggctttgctggtgagaagggtccttctggagaggctggtactgctggaccccctggcacc
ccaggtcctcagggtcttcttggtccacctggcattctgggtctccctggcaccagaggt
gaacgtggtctcccaggcgtggctggagctttgggtgaacctggtcctcttggcgtggct
ggtcctcctggcgcccgtggaccccccggtgctgtgggcagtcctggggtcaatggcgct
cctggtgaagcgggtcgtgatggcaaccctgggagtgatggtcctccaggtcgtgatggt
cagcctggacacaagggagagcgtggttaccctggcaacgctggccctgctggcgctgca
ggtgctcctggtcctcaaggctccgtgggccccactggcaaacacggaaaccgtggtgaa
cctggtcctgctggttctgttggtcctgttggtgctgttggtcccagaggtcctagtggc
ccacaaggcatccgtggtgacaagggagagcctggtgacaagggtcccagaggtctgcct
ggcttaaagggacacaatggcttgcagggtcttcctggtctcgctggtcaacacggtgac
caaggtgctcctggtgctgtgggtcctgctggtcccaggggccctgctggtcccactggc
cctgctggtaaagatggtcgctctggacatcccggcacagttggccctgctggcgttcga
ggctcccagggtagccaaggtcctgctggccctccaggtccccccggacctcctggtcct
cctggtgcaagcggtggtggttatgacttcggctatgatggagacttctacagggctgat
cagcctcgctcaccgccttctctcagacccaaggactatgaagtcgatgccactctgaaa
tctctcaacaaccagattgagaccctcctcactcctgaaggctccaggaagaaccccgct
cgcacctgccgtgacctgagactcagccaccccgagtggagcagtggttactactggatt
gatcctaaccaaggctgcactatggatgccatcaaagtatattgtgatttctcctccggg
gagacctgcatccaggcccagcctgacagtgtcgcagtcaagaactggtataagaactcc
aagcccaagaagcatgtctggttaggagaaatcaatggtggtacgcagtttgaatacaac
acagaaggtgtaacctccaaggagatggccacccaactcgcctttatgcgcctgctggcc
aatcatgcctctcagaacatcacctaccactgcaagaacagcatcgcgtacatggatgcg
gagactggtagtctgaacaaggccgtcattctgcagggctccaacgatgttgaacttgtt
gctgagggcaacagcaggttcacttatactgttcttgtggatggctgctcgaaaaagaca
aacgaatggggaaagacaatcattgaatacaaaacaaacaagccatcccgcttacccttc
ctggacatcgcacctttggacattggtggttctgaccaagaactctatgtggacattggc
ccggtctgtttcaaataa
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