Ochotona princeps (American pika): 101532435
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Entry
101532435 CDS
T07609
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opi03009
]
101532435 (PDCD11)
Ribosome biogenesis [BR:
opi03009
]
Eukaryotic type
90S particles
Other 90S particles
101532435 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_Syf1_CNRKL1_N
OB_RRP5
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
Suf
TPR_14
OB_RRP5_4th
TPR_19
TPR_CcmH_CycH
ARM_TT21
UTP6_C
TPR_12
DUF7017
TPR_6
NRDE-2
ARM_TT21_5th
DUF2110
ARM_TT21_C
TPR_7
TPR_1
PPR
Motif
Other DBs
NCBI-GeneID:
101532435
NCBI-ProteinID:
XP_004580287
LinkDB
All DBs
Position
18:complement(22134233..22187221)
Genome browser
AA seq
1852 aa
AA seq
DB search
MAALEENFPRGGTRKKSDHKSEKSFQQAAEQDNLFDVSNEEKSSKRKKSQKEPAITKKFK
TEEREKNKCVTEKFEILSVESLCEGMRILGCVKEVNELELVISLPNGLQGYVQVTEICNA
YTEKLTEQMAQEEPLKDLPRLPELFSPGMLVRCVVSSLAVTEKGKKSIKLSLNPKNVNRV
LSAEALKPGMLLTGTVSSLEDHGYLMDIGVSGTRAFLPLQKAQEYIRQKNKGANLKVGHY
LHCIIEEVKGDGGVVSLSVGNTEVSTAIASEEQSWTLNNLLPGLVVKAQVQKVTRFGLTL
NFLTFFTGTVDFMHLDPKKVGTYFSNQAVRACILWVHPQSRVVRLSLRPIFLQPGRPLSR
LSCQHLGAVLDDVPVQGFFIKAGATFTLKDGALAFARLNHLSDSKKVFRPEAFKPGNTHK
CRIIDYSPLDELILLSLRTNGTVLTIKPYGILLKVGEQIRGLVPANHLADVFMKNPEKKY
HVGEELKCRVLLCDPEAKKLIMTLKKTLVESKLPAITCYDDAKPGLQTHGVITRVKDYGC
LVKFYNDVQGLVPKHELSAEYIPDPENIFYSGQVVKVVVLNCEPSKERMLLSFKLLSNTE
QKKEHMAQKKGQSINVGQLVDVKVLEKTKDGLEVAVLPHNIPAFLPTAHLSDHVANGPLL
HHWLQAGDILHGVLCLSQSEKHILLCRKPALVSTVEGGQSPKNFSEIHPGMLLIGFVKSI
KDYGVFVQFPSGLSGLAPKAIMSDKFVTTPSDHFVEGQTVVAKVTNVDEEKQRMLLSLRL
SDCMLGSVASTSLLLLSQCLEELQGVRSLMSNQDSVLIQTLAKMTPGMILDLAVQEVLED
GSVLFSEGPVPGLVLRASKYHRAGQKVKSGQKKKVVVLNVDMLKLEVHVSLFQNLVERKA
KKLKRGSEHQAIVEHLEESFAIASLVGTGHLAAFSLTSHLNDTFRFDSEKLQVGQGVSLT
LKTTEPGVTGFLLAVEGPAAKRTMRQSRKDSETVDEDEEMDPALTVGCLKKHTLSIGNKV
TGTVKAVKATHVVVTLEDGIIGCIHASHILDDVPVGTSPTSTLKVGKTVTARVIGGRDVK
TFKFLPISHPRFIRTIPELSVRPSELAKDGHTALNTYSDSPVEKIKQYQAGQTVTCFLKK
YNMVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKRPDKKFQVGQALKATVVGPDSSKAFLC
LSLIGPHKLEEGAVAMGRVVKVTPNKGLIVSFPFGRKGRVSMFHVSDSYSETPLQDFTPR
KVVRCYILSAEKPVLALSLRLSRTNPETKSKVEDPEIDSIRDVREGQLLRGYVRSVQASG
VFLGLGPSVMGFADYPHVSQYEPSEKDLYDKYLPEGKLLTAKVLRLNYQQDLVELSFLPG
DTGKPDIFPASLELPLLKQGKRRKAEEKCQKREGKEQKNQTTKQKNLQGQQEAQLPSKEP
GELPRPPGKGQGKRERRESGNEQERGNKKPKKAGPSEESDSGVEVYYREGEEELEEADVL
PKKPTRPAEVPRLQLSSGFAWNVGLDSLTPALPPQGDSSDSEEDEKPRPTTKKSKKEREL
EKQKAEKELSRIEEALMDPGRQPESADEFDRLVLSSPNSSILWLQYMAFHLQATEIEKAR
AVAERALKTISFREEQEKLNVWVALLNLENMYGSRESLDKVFERALQYNEPLKVFLHLAD
IYTKSEKFQEATELYNRMLKRFRQEKSVWIKYGAFLLRRSQAGASHRALQRALECLPSKD
HVDVIVKFAQLEFQLGDAERAKAMFENTLSTYPKRTDVWSVYIDMTIKHSSQKEVRDIFE
RVIHLSLAPKRMKFFFKRYLDYEKQNGTEKDVQAVKAKALEYVEARSSVMED
NT seq
5559 nt
NT seq
+upstream
nt +downstream
nt
atggcagccctggaagaaaacttccctcgagggggtacaagaaagaaatccgatcacaag
tcagagaaatcattccagcaagccgctgaacaagacaatttatttgatgtttccaatgaa
gaaaaatcctccaaaaggaagaagagccagaaagagccagcaataacaaaaaagttcaaa
actgaagagagagaaaaaaacaagtgtgtaacggagaagtttgaaatccttagtgttgag
tccttatgtgagggaatgcggattttgggttgtgtgaaagaggtgaatgaactggaactg
gtgatcagtctccccaatggcctccagggatatgtgcaagtgactgagatctgtaatgcc
tatactgaaaaactaactgaacagatggcccaggaagaacctctgaaggacctaccccgt
ttgcctgaactcttctcacctggaatgctggtgaggtgtgtggtgagcagcctggctgtc
acagagaagggcaagaagagtatcaagctgtctctgaaccccaaaaatgtcaacagagtg
ctaagtgcagaggccctgaagcctggcatgcttctcacaggcactgtgtccagcctggaa
gaccatggctacctcatggacattggcgtcagtggtaccagagcttttctgccactacag
aaagcccaggagtacatccgacagaaaaacaaaggtgctaacctgaaggtgggtcactac
ctgcactgcatcattgaagaggtgaagggagatggtggtgttgtcagtctgtctgtgggc
aacacggaggtttcaactgccattgcttctgaggagcaaagctggaccctcaataacctg
ttaccgggactggtggtcaaagcccaggtacagaaggtgactcggtttggcctaacgcta
aactttctcacattcttcacgggcacagttgactttatgcacctggatcccaagaaagtt
ggcacgtatttctcaaatcaagcagtcagagcctgcatcctctgggtccatccccagagc
agagtggtacgcctgagcctgcgtcccatcttcctccaacctgggcggcccctctcacgc
ctctcttgccagcacctgggagccgtgctggatgacgttcctgtccagggttttttcatc
aaggctggagccaccttcaccctaaaggatggagctctggcttttgcccggctcaaccat
ctctctgattccaagaaagtcttcagacctgaggccttcaagccagggaacactcacaag
tgcagaatcatcgactacagcccattggatgaactgatcttactctctttgcgaacgaat
ggcacagtgctgaccataaagccctatgggattctactgaaggtgggcgagcagattcgg
ggcctggtacctgccaatcacctggctgatgttttcatgaagaacccagagaagaaatac
cacgttggggaggagctcaagtgtcgggttttactttgtgaccctgaagccaagaagctg
ataatgaccctcaagaaaaccttggttgaatctaagctccctgccattacctgctatgat
gacgccaaacctggcctgcagacacacggcgtcatcaccagggtcaaggactatggctgc
cttgtcaagttctacaacgatgtgcagggattggtgcccaagcatgagctcagtgccgag
tatatcccagacccagagaacatattttatagcggccaggtagtgaaggtggtggtgttg
aactgtgagccatccaaagagaggatgcttctgtccttcaagctgttgagcaacacagaa
cagaagaaagagcacatggcacagaagaaaggacaaagcatcaacgtagggcagttggtg
gatgtgaaggttttggagaagaccaaagatggactggaggtggctgtcctgccccacaat
attcctgctttccttccaacggctcacctgtcggaccatgtcgccaatggcccactgcta
catcactggctccaagcaggggacatccttcatggcgtcctttgtctgagtcagagcgag
aagcacattcttctttgtaggaagccagccttagtgtccacagtggaaggtggccagagt
cccaagaacttctcagaaatccatcctggaatgctgctcattggttttgtgaagagcatc
aaggactacggcgtgtttgtccagttcccctcgggtctcagtggactggcccctaaagct
atcatgagtgacaaatttgtgactaccccaagtgaccactttgtcgaagggcagacagtt
gtcgccaaggtgaccaatgtggatgaggagaagcagcggatgctgctgtccctgcggctg
tcagactgcatgctgggcagtgtggccagcaccagcctcctcctcctgagccagtgcctg
gaggagctgcagggcgtccgcagcctcatgagcaaccaagactctgtgttgatccagaca
ctagccaagatgaccccagggatgatccttgacctagcagtgcaggaggtgctggaagat
ggctctgtgctgttcagtgagggcccagtgcctggcctggtcctgagagccagcaagtac
catcgagccgggcagaaggtgaagtccggacaaaagaagaaggttgttgtcttaaatgta
gacatgttaaagctggaagtgcatgtttcccttttccagaacttggtggagaggaaagct
aaaaagctgaagagaggcagcgagcaccaggcgattgtggagcacctggaggagtcattt
gccatagcttccttggtaggcactggccacctggctgccttctccctgacatctcacctc
aatgacaccttccgcttcgattcagagaaactgcaggtggggcagggtgtctcattaaca
ctcaagaccacggagccgggagtgactggctttctcctggctgtggaaggcccagctgct
aagaggaccatgagacagagccggaaggactctgagacagttgatgaggatgaggaaatg
gatccagcactcaccgtggggtgtctgaaaaagcataccctgtccatcgggaacaaggtc
accgggactgtcaaggctgtgaaggccacccacgtggttgtgactctggaggatggcatc
attggctgtatccatgcctcccacattctggatgatgttccagtgggcacctctccgact
tccacgctgaaagttgggaagacagtcacagcccgagtgattggtggacgagacgtgaag
acgttcaagtttctcccgataagtcatcccaggtttatccgaacgatcccagaattgagt
gttcggccaagcgagctggcaaaggatggccacactgctcttaacacttactctgatagc
cctgtggagaaaatcaaacagtaccaggccgggcaaactgtgacttgcttcttaaagaag
tacaacatggttaagaaatggcttgaagtggagattgcaccagacatccgggggagaatc
cccttgttgctcacctctctcagcttcaaggttctgaaacgtccagacaagaagttccag
gttggccaagccctgaaggccaccgtggttggtccagattcctccaaggccttcttgtgc
ctctcactcataggtcctcacaagcttgaggaaggggcagtggctatgggccgagtggtg
aaggtgactcccaacaagggcctgattgtctccttcccctttgggaggaagggacgagtc
agtatgtttcatgtgagtgactcctactctgagacccccctacaggacttcaccccccgg
aaggtggtcagatgttacatcctgtctgctgagaagccggtgctggctttatcactgcgg
ttgtccagaacaaacccagagacaaaaagcaaagtagaagatccagagattgactccatc
cgggatgttagagaagggcagctcctgaggggctacgtgaggtcggtccaggccagcggc
gtgttcctgggcctggggccctccgttatgggttttgctgactacccacatgtgtcccag
tatgagccatctgagaaagacctttatgacaaatacctgcctgaagggaagctgctcact
gccaaggtcctaaggctgaactaccagcaggacctggttgagctgtcgttcctcccgggg
gacacggggaaacccgacattttccctgcctccctggagctgccgctgctgaagcaaggg
aagaggagaaaagccgaggaaaaatgccagaaaagagaagggaaggagcagaagaatcag
acaacgaaacagaagaatttacaggggcagcaggaggcacagctgcccagcaaggagccg
ggagagctcccacggcctccggggaaggggcagggcaagcgggagcgccgggagtccggc
aatgagcaggaacgaggcaacaagaagcctaagaaggccggcccgtcagaggagagtgac
agtggtgtggaagtgtattaccgggaaggagaggaggaactggaggaggcggacgtgctg
cctaagaagccgaccaggcccgcagaagtgccccggctacagctgtcgtcaggctttgcg
tggaatgtggggctcgactctctgaccccggccttgccgcctcaaggagacagttccgac
agtgaagaagacgagaagccacgccccacaacgaaaaagagcaagaaggagagggaactg
gagaaacagaaggctgagaaggagctgtcgcgtattgaagaggcgctgatggatcctggg
cggcagccagagtcggcagatgagtttgaccgcctcgtgctgagctcccccaacagctcc
atcctgtggctgcagtacatggctttccacctgcaggccacagagatcgagaaggcccgg
gccgtcgcagagagggccctcaaaaccatctccttcagggaggaacaagagaagctgaac
gtgtgggtggcgctgctgaacctggagaacatgtatggctcccgggagtccctggacaag
gtcttcgagcgggcgctgcagtacaacgagccgctcaaggtcttcctccacctggctgac
atctacaccaagtcagagaaattccaggaagctactgagctatacaaccgcatgctgaag
cgtttccggcaggagaagtccgtctggatcaagtatggtgccttcctcttgcggaggagc
caggctggggcaagccaccgcgcgctacagcgggccctcgagtgcttgccttccaaggat
catgtggatgtgattgtcaagtttgcccagctggagttccagctgggggacgcagagcgg
gccaaagccatgtttgagaacacgctgagcacctaccccaagcgtacggacgtctggtcg
gtctacatcgacatgaccatcaagcacagcagccagaaggaagtccgggacatcttcgag
cgtgttattcatctgagtctggcccccaagaggatgaaattcttcttcaaacgctacctg
gactatgagaagcaaaacggcacagagaaggatgttcaagccgttaaggccaaggccctg
gaatatgtggaggccaggagctcggtaatggaggactag
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integrated database retrieval system
