Ochotona princeps (American pika): 101532623
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Entry
101532623 CDS
T07609
Symbol
CNOT10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101532623 (CNOT10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101532623 (CNOT10)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101532623 (CNOT10)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_14
ARM_TT21_N
TPR_12
TPR_8
TPR_19
ARM_TT21
TPR_7
TPR_MalT
DUF6058
BLOC1_2
SCAF11-like_C
TPR_17
COMPASS-Shg1
Motif
Other DBs
NCBI-GeneID:
101532623
NCBI-ProteinID:
XP_004588305
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Position
14A:complement(5915503..5969225)
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AA seq
804 aa
AA seq
DB search
MKSIGLKNVKVCGTKSSVRPEGQPCSVGQSRRKVKLMDERSYTLSIGNGDYFWTNKDTLW
NYVQSLSDQGAEKHEGSGQSSGLTDQEKEFSTNAYQAFTSGNYDACLQHLACLQDINKDD
YKIILNTAVAEFFKSNQTTTDNLRQTLNQLKNQVHSAVEEMDGLDDVENSVLYYNQAVIL
YHLRQYTEAISVGEKLYQFIEPFEEKFAQAVCFLLVDLYILTYQAEKALHLLAVLEKMIS
QGSNNKNGKNETGNNSNKDGSNHKAESGALIEAAKSKIHQYKVRAYIQMKSLKACKREIK
SVMNTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGFMKTGECLRCMFWNNLG
CIHFAMSKHNLGIFYFKKALQENDNVCAQLSAGSTDPGKKFSGRPMCTLLTTKRYELLYN
CGIQLLHVGRPLAAFECLIEAVQVYHANPRLWLRLAECCIAANKGTSEQETKGLPSKKGI
VQSIVGQGYHRKIVLASQSVQNTVYNDGQSSAIPVASMEFAAICLRNALLLLPEEQQDPK
QENGSKSSSQLGGDTEGSESSEACSSKSHDGDQFIPAPPSSPLRKQELENLKCSILACSA
YVALALGDNLMALNHADKLLQQPKLSGSLKFLGHLYAAEALISLDRISDAITHLNPENVT
DVSLGVSSNEQDQGSDKGENEAMESSGKRAPQCYPSSVSSARTVMLFNLGSAYCLRSEYD
KARKCLHQAASVIHPKEVPPEAILLAVYLELQNGNTQLALQIIKRNQLLPAVKVHSEMRK
KAVCPPTHPMPPIQMPAFTTVQRK
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgaagtccattggcttaaagaatgtcaaggtgtgtgggacaaagagctctgttcgcccg
gaaggtcagccctgctcggtgggccagagcagaaggaaagtgaagcttatggatgagcgg
tcatacactctgtcaattggcaatggagattacttttggacaaataaagacactttgtgg
aattatgtgcagtctctatctgatcagggggcagagaaacatgaagggtcaggtcagtcc
tctggcctcacggatcaagagaaggagttctccaccaatgcctaccaagcgttcacatct
ggaaattacgacgcctgtctgcagcaccttgcctgtctacaagatataaacaaagacgat
tacaaaataattttgaacacagcagtagctgaattttttaaaagtaaccaaacaacaaca
gataatttgaggcagacgcttaaccagctgaagaatcaggtgcactctgctgtggaagag
atggatggcttggatgacgtggagaacagtgtgctgtactataaccaggctgtcattctg
taccacctgcggcagtacacggaagccatctccgtgggcgagaagctttaccagttcata
gaacctttcgaagaaaaattcgcccaggccgtctgttttttgcttgtagacctgtacata
ttaacctaccaagctgagaaagctttgcatcttcttgcggtgctggaaaaaatgatttcc
cagggcagcaacaataaaaatgggaagaatgagacaggtaataatagcaacaaagacgga
tcaaaccataaagctgagagcggcgctctgatagaagctgcgaagtcaaagatacatcag
tacaaagtaagagcttacatccagatgaagtccttgaaagcctgcaagagggaaatcaag
tcggtcatgaacacggctggaaattcggcaccctctctgtttcttaaaagcaattttgag
tatttaaggggcaattaccgaaaagctgtgaagcttctgaatagctctaacattgctgag
cacccaggattcatgaaaacaggtgaatgcttgaggtgcatgttctggaataatcttggt
tgcatccactttgctatgagcaagcacaatttgggcattttctactttaaaaaggcgcta
caggagaatgacaatgtctgtgcccagctcagcgcagggagcactgacccaggcaaaaaa
ttctcgggaaggcccatgtgtacgttgctcaccaccaagaggtatgagctgctgtataac
tgcggaattcagctgctgcacgtcgggaggcccctggctgcctttgagtgtctgatcgaa
gccgtgcaggtctaccacgccaaccctcgcctgtggctgcggctggccgagtgctgcatt
gctgccaataaggggacttctgaacaagaaactaaagggcttccaagcaaaaagggaatt
gttcagtccatcgttggtcaaggctatcatcgtaaaatagttctggcttcacagtctgta
cagaacactgtatataatgatgggcagtcttcagctatccccgtagccagcatggagttt
gcagccatctgtctcagaaatgccttgttgctgttacctgaggaacagcaagacccaaag
caggaaaatggctctaaaagcagtagccagttaggcggggacaccgagggcagtgagagc
agtgaagcctgcagcagtaaaagccacgatggagatcagttcattcccgccccgccttca
tcaccactgagaaagcaagaactagaaaacttaaagtgctccatcctggcttgcagtgct
tacgtggccctggctctgggtgacaacctgatggctttgaatcatgcagataaacttctt
cagcagcccaagctatcaggatctctcaagtttttgggccatctctatgctgcagaagcc
ctcatctctctcgacagaatatctgatgccatcactcacctgaacccggagaatgtcact
gatgtctcgttaggggtctcttcaaatgagcaggaccaaggatcagacaaaggtgaaaat
gaagcaatggaatcctccgggaagcgggctccccagtgctaccccagctccgtcagctcc
gccaggaccgtaatgctcttcaacctgggcagtgcgtactgcctgaggagcgagtacgac
aaagcccgcaagtgtctgcaccaggcggcatcagtgatccaccctaaggaggtgccaccc
gaagccatcctgctagctgtctatctggagctgcagaacggtaacacccagctggccttg
cagatcatcaaaaggaatcagctgctcccggcggtgaaggtgcattccgagatgagaaag
aaggcagtgtgcccgcccacccacccgatgccgcccatccagatgccagcttttaccact
gtgcagagaaagtga
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