Ochotona princeps (American pika): 101532632
Help
Entry
101532632 CDS
T07609
Name
(RefSeq) putative short transient receptor potential channel 2-like protein
KO
K04965
transient receptor potential cation channel subfamily C member 2
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
opi04040
]
101532632
Ion channels [BR:
opi04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
101532632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRCC1_N
TRP_2
Ion_trans
PKD_channel
Ank_2
YVC1_C
Ank
Motif
Other DBs
NCBI-GeneID:
101532632
NCBI-ProteinID:
XP_036348325
LinkDB
All DBs
Position
1:59735754..59763781
Genome browser
AA seq
1263 aa
AA seq
DB search
MAPVKISHVVSFSSQDPKYPVENLLNPDSQKGPWLSCPQDKSGQLKVELQLERAVSIGYI
DVGNSGCAFLQIDVGRSSWSLDKPFVTLLPATMLMSRTDSKQGKNRSGVRMFKNDDFLAA
ASGESWDRLRLTCSQPFTRQQSFGLAFLRVRSSLDSSDDSGTDPIATGNSELSQVSSEDP
AVDHSPWLANPSIRRTFFPDPQMNTKEMTKLHDLLKQLQPGALGRSAHMVLSAARKAPPA
RVASPQSHRSDPGPSHMDSTEPRAEEQCSENDEGRRKRRKVRHPRPQSTSNPKLNRKGTA
KAGARKQHLSEAQHSGTQESGQCPLCAGSFSIELLPLHAATCGETTPPRPASPSSSSSSS
PSVGAAMDPLTPQPNWTEIVNKKLKFPPLLLGAIQEGRLGLVQQLLESGAEAAGGGPGGP
PRNVEEAEDRSWREALNLAIRLGHEAITDVLLANVKFDFRQVHEALLVAVDTNQPAVVRR
LLARLEREKGRKVDTRSFSLAFFDSSIDGSRFAPGVTPLTLACQKDLYEIAQLLMDQGHT
IARPHPVSCACLECSNARRYDLLKFSLSRINTYRGIASRAHLSLASEDAMLAAFQLSREL
RRLARKEPEFKPEYIALESLCQDYGFELLGMCRNQSEVTAVLNDLGEDSDAEPEAEGLGQ
AFEEGIPNLARLRLAVNYNQKRFVAHPICQQVLSSIWCGNLAGWRGSTTIWKLFVAFLIF
LTMPFLCLGYWLAPKSQLGRLLKIPVLKFLLHSASYLWFLIFLLGESLVMETQLSTFRGR
SQSVWETSLHMIWVAGFLWFECKEVWIEGLRSYLLDWWNFLDVVILSLYLAAFALRLLLA
GLAYLHCRDASDGAACRYFTSAERDEWRTEDPQFLAEVLFAVTSMLSFTRLAYILPAHES
LGTLQISIGRMIDDMIRFMFILMIILTAFLCGLNNIYVPYQETERLGNFNETFQFLFWTM
FGMEEHSVVDMPQFLVPEFVGRALYGIFTIVMVIVLLNMLIAMITNSFQKIEDDADVEWK
FARSKLYLSYFREGLTLPVPFNILPSPKAIFYLLRRIFQFICCCCSGCKAKKPEYPPIPS
FANPGAGPGPAEGERGSYRLRVIKALVQRYIETARREFEETRRKDLGNRLTELTKTVSRL
QSEVAGVQRTLADGGTRRPPDGASILSRYITRVRNSFQNLGPPIPETPELTKPGMVDIQP
SSETGPQDAGGPAAPAALEPGFSSPAHVLVHREQEAEGPGDLPLEEGLGAKEGTPNCGLT
QCG
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgtgaagatcagccatgtggtgtcattttcctctcaggatcccaaatatcct
gtggagaacttgctgaacccagacagtcagaagggaccttggctcagctgccctcaggac
aagagtggacagctcaaagtagaactgcagctggagagggccgtgtccattggctacatc
gatgtggggaacagtggctgtgccttcctgcaaattgacgtgggtcggtcttcctggtct
ctggacaaaccttttgtcacactgctccctgccaccatgctgatgtcccgaactgattca
aagcaagggaagaaccgctcaggagtgcgcatgttcaagaatgatgacttcttggctgca
gcctcaggggagtcctgggatcggcttcgcctgacctgctctcagcccttcacacgccaa
cagtcctttggcctggccttcctgcgggtgcggtcgtctctggactcctcagatgacagt
gggacggatcccatagccacggggaactctgagctgagccaggtctcttctgaggaccct
gccgtggaccacagcccctggctggctaatccttccatccggaggactttcttcccagat
ccccagatgaacaccaaggaaatgacaaagctgcatgatctcctaaagcagctgcagcca
ggggccctgggacggtcagcccacatggtgctctcggcagcgcgaaaggcacctccagcc
cgagtggcaagcccacagagccaccgctcagacccagggcccagtcacatggacagtaca
gagcccagagcagaggagcaatgctcagagaatgacgagggcagaaggaagaggcggaaa
gtacggcatccacggcctcaatccacctcgaaccctaagctcaacaggaagggcacggca
aaggcaggagcaagaaaacagcacctgtccgaggcccagcacagtggtacccaggagagt
ggacagtgcccgctttgtgcaggctccttcagcattgagcttctccctctgcacgcggcc
acttgtggagagaccaccccacctcgcccggcttctccctcatcgtcatcatcttcatcg
ccatctgtgggtgcagccatggacccactcacgcctcaacccaactggactgagatcgtg
aataagaagctcaagttcccacctttactcctgggagctatccaggaggggcgactgggc
cttgtgcagcagctgctggagtcaggggcagaggccgccggtggtggccccggaggccca
ccgcgcaatgtagaggaggctgaggaccgctcctggagggaagccctcaacctggccatc
cgcctgggccacgaggccatcactgacgtgctgctggccaatgtcaagtttgacttccgg
caggtccacgaagccctgctagtggcagtggacaccaaccagccggctgtggtgcgtcgc
ctgttggcccggctggagcgggagaagggtcgcaaagtggacacccggtctttctccctg
gctttctttgattcatccattgatggctctcgctttgcgcccggggtcactccactcaca
ctggcctgccagaaggacctgtatgagattgcccagctgctcatggaccagggccacacc
attgcccggccccatccagtctcctgtgcttgccttgagtgcagcaatgcccgccgctat
gacctgctcaagttctccctgtcccgcatcaacacctaccgcggcatcgccagcagggcc
cacctgtcactcgccagtgaggacgccatgctggctgccttccagctgagccgtgagctc
aggcgtctggcacgcaaggagcctgagtttaagcctgagtacattgcactggagtcactg
tgccaggactacggctttgagctgctgggcatgtgccggaaccagagcgaggtcactgca
gtgctcaatgacctgggagaggacagcgacgcagagcccgaggctgagggcctgggccag
gcctttgaggaaggcatccccaacctggcgaggctgcgactggctgtgaactacaaccag
aaacggtttgtagcacaccccatctgtcagcaagtgctgtcctccatctggtgtgggaac
ctggccggctggcgtggaagcaccaccatctggaagctctttgtcgccttcctcatcttc
ctcaccatgcccttcctctgcctcggctactggctggcacccaagtcccagctgggccgc
ctgctgaagatcccagtgctgaagttcctgctgcactcagcctcctacctgtggttcctc
atcttcctgctgggagagtccctggtcatggaaacgcagctgagcaccttccggggccgc
agccagagcgtgtgggagacatcgctgcacatgatctgggtggcaggcttcctgtggttt
gagtgtaaagaagtgtggattgaaggcctgcgcagctacctcctggactggtggaacttc
ctggatgtggtcatcctgtccctgtacctggcggccttcgccctgcgcctcctgctggcc
ggcctcgcctacttgcactgccgggatgcctctgatggggctgcctgccgctacttcacc
tcagccgagcgagatgagtggcgcaccgaggatccccagttcttggcagaggtactcttt
gctgtcaccagcatgctcagcttcacccgcctggcctacattctgccagcccacgagtcg
ctgggtaccctgcagatctccattggcaggatgatcgatgacatgatccggttcatgttc
atcctcatgatcatcctgaccgccttcctctgtggcctcaacaatatctacgtgccttat
caggagacggaacggctgggcaacttcaatgaaacattccagttcctgttctggaccatg
tttggcatggaagagcacagtgtggtggacatgccccagtttctggtgcctgaatttgtg
ggccgggccctttacggtatcttcaccattgtcatggtcatcgtgctgctcaacatgctc
attgccatgatcaccaactccttccagaagattgaggacgatgctgatgtggagtggaag
tttgctcgctccaagctctacctgtcctacttccgcgagggcctgacgctccctgtgccc
ttcaacatcctgccctcccccaaggccatcttctaccttctcaggagaatcttccagttc
atttgctgctgctgctctggctgcaaagccaagaagcccgagtaccccccgatcccatca
tttgccaaccctggagcaggaccagggccagcagaaggcgagcgcggctcctaccgcctg
cgtgtcatcaaggctctggtccagcgctacattgagactgcccggcgtgagttcgaggag
acccggcggaaagacttgggcaacagactgacggagctgaccaagactgtgtcgcggctg
cagagtgaggtggctggtgtacagcgaaccttggcagatgggggaacacgccggcctcct
gatggtgccagcattctcagccggtacatcacccgggtacgcaacagcttccagaacctg
ggcccccccatccctgagaccccagagctgacaaagccagggatggtggacattcagcca
tcttcagaaactgggcctcaggatgctggtggcccagcagctccagctgccctggagcct
ggcttctcctccccagctcatgtgctggtacacagagagcaggaagccgaggggcctggg
gacctgcccctggaggagggtttgggggccaaagagggcaccccaaactgtggtctgacg
cagtgtggctga
DBGET
integrated database retrieval system
