Ochotona princeps (American pika): 101532771
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Entry
101532771 CDS
T07609
Symbol
RBM39
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
opi03041
]
101532771 (RBM39)
Spliceosome [BR:
opi03041
]
Common components
Common spliceosomal components
General mRNP proteins
101532771 (RBM39)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
POP1_C
IHO1
Motif
Other DBs
NCBI-GeneID:
101532771
NCBI-ProteinID:
XP_004585828
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All DBs
Position
4A:complement(22383346..22419810)
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AA seq
530 aa
AA seq
DB search
MADDIDIEAMLEAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRD
RERKKSKSRERKRSRSKERRRSRSRSRDRRFRGRYRSPYSGPKFNSAIRGKIGLPHSIKL
SRRRSRSKSPFRKDKSPVREPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVR
DVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMAN
NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD
SECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDELERTGIDLGTTGRLQLM
ARLAEGTGLQIPPAAQQALQMSGSLAFGAVAEFSFVIDLQTRLSQQTEASALAAAASVQP
LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPS
IAAAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSRR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgatattgatattgaagccatgcttgaggctccctacaagaaggatgagaat
aagttgagcagtgcaaacggccatgaagaacgtagcaaaaagaggaaaaaaagcaagagc
aggagtcgtagtcatgaacggaagagaagcaaaagtaaggagcggaagagaagcagagat
agagaaaggaaaaagagcaaaagtcgggaaaggaagcgaagtagaagcaaagaaaggaga
cggagccgatcaagaagtcgagaccgcagattccgaggccgttacagaagcccttactcc
ggaccaaaatttaacagtgccatccgaggaaagattgggttgcctcatagcatcaaatta
agcagacgacgttcccgaagcaaaagtcccttcagaaaagacaagagcccagtgagagag
cctatagataatctaactcctgaggaaagagatgctcggacagtattctgtatgcagttg
gcagcaagaattcgaccacgggatttggaagaattcttttctacagtaggaaaggttcga
gatgtgcggatgatttctgatagaaattcaagacgttccaagggaattgcttatgtggag
tttgtcgatgtgagctcagtgcctctagcaataggactaaccggccagcgagttttagga
gtgccaatcatagtacaagcttcacaggcagagaaaaacagagctgcagcaatggcgaac
aatttacaaaaagggagtgctggacctatgagactttatgtgggctcattacactttaac
ataacggaagacatgcttagaggaatctttgagccttttggaaggattgaaagtatacag
ctcatgatggatagtgaaacaggtcgttcgaaaggatatggatttattacattttctgat
tcagaatgtgccaaaaaggctttagaacagctgaatggatttgaactagcaggaaggccg
atgaaggttggtcatgttactgagcgtactgatgcttccagtgctagttcatttttggat
agtgatgaactggaaaggactggaattgacttgggaacaactggtcgtctgcagttaatg
gcaagacttgcagagggtactggtttgcagattcctccagcagcacagcaagcactgcaa
atgagtggttctttggcatttggtgctgtggcagaattctcttttgttatagatttgcaa
acaagactttcccaacagactgaagcttccgctttagctgctgctgcctctgttcaacca
cttgcaacacagtgtttccagctctctaatatgtttaacccgcaaacagaagaagaagtt
ggatgggatacagagattaaggatgatgtgattgaagaatgtaataagcatggaggagta
attcatatttatgttgacaagaattcagctcagggcaacgtgtatgtgaagtgcccatca
attgctgcagctattgctgctgtgaatgcattgcatggcaggtggtttgctgggaaaatg
ataacagcagcatatgtacctcttccaacttatcacaacctgtttcccgattctatgacg
gcaacacaactactagtgccaagtagacgatga
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