Ochotona princeps (American pika): 101532823
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Entry
101532823 CDS
T07609
Symbol
TRIM38
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM38
KO
K12014
tripartite motif-containing protein 38 [EC:
2.3.2.27
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101532823 (TRIM38)
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101532823 (TRIM38)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101532823 (TRIM38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-B_box
zf-C3HC4_4
zf-C3HC4
zf-RING_UBOX
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_2
CorA
U-box
Fib_alpha
RDM
Zn_ribbon_CSL
FliD_C
Motif
Other DBs
NCBI-GeneID:
101532823
NCBI-ProteinID:
XP_004598454
LinkDB
All DBs
Position
12:26260398..26268231
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AA seq
465 aa
AA seq
DB search
MASAPSTKRMREEATCSICLNLMMDPMSVTCGHSYCCRCITDFLNNLRQLQHLQKVFPCP
QCRALCSMESLRPNKQLGNLIEAIKEMEQGISCGEHGEQLQLFCEDDGQLICWRCERTSY
HQGHTTALVEDVCHGYREKIQKAVAQLKKLEEECMDQKKFMTMQITKWKEKIETRRQKIR
CDFEALQMFLQKEQTSYLWRLEKEEKQLLRKLRDGEASLEKQSQELRNHIQGLEERCQGP
PQTLLKDVKDTLDKSWAVKLEAPETFVLEVLTTCNVSELYFDVKKMLKSNQVSVTLDPAT
AHRELTLSEDRRQVTRGWPQENIEPSPRRFSTLPCVLGYEGFSSGKHFFEVDVGEGTGWD
LGVCVESVPRGSGIKQKPQCGFWAIRLCRRRGYIALTYPPTPLFLNPQPLVVGVFLDCEA
GLVSFYNMTTGVHIFTFPKTSFSDTVRPYFQVYHCSPLFLPPPGE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcctcagcccccagcaccaagaggatgagggaggaagccacctgctccatctgcctg
aacctaatgatggatccaatgagtgtcacctgtggacacagctactgctgcagatgcatc
acagatttccttaataacctgaggcagctccaacatctgcagaaggtattcccttgcccc
cagtgtcgagccctgtgttccatggaaagtctccggcccaacaagcagctgggaaacctc
attgaagccatcaaggagatggaacaggggatatcatgtggtgagcacggggagcagctg
cagctgttctgtgaggacgatggccagcttatctgctggcgctgtgagcggacatcatat
caccaagggcacaccacagccttggtggaggacgtgtgccatggctacagggaaaagatc
cagaaagctgtggcacagttaaagaaactcgaagaggagtgtatggatcagaagaaattc
atgaccatgcaaataactaaatggaaggagaagatagagactcgaagacagaagatccgg
tgtgatttcgaggctctccagatgtttcttcaaaaagagcagacatcttacctctggagg
ctggagaaagaggaaaagcagcttttgaggaagctgcgggatggggaagccagtctggag
aagcagagccaggaactcaggaaccacatccaggggctggaggaaagatgtcagggtcca
ccccagacactgctgaaggatgtgaaagatactctggacaagagctgggctgtgaagctg
gaagcaccagagaccttcgttttggaggtccttactacgtgcaatgtttctgagctttac
tttgatgtgaagaaaatgttaaagagcaatcaagtcagtgtgactctggatccagctaca
gctcatcgtgaactgactctgtctgaagaccggagacaagtgacccgcggatggccccag
gagaatatcgagccctctcccaggagatttagtaccttaccctgtgtcctgggctacgag
ggcttcagctctggaaagcacttctttgaagtggatgtcggagaaggaacagggtgggat
ttgggagtctgtgtggaaagtgtgccgaggggttctggcataaagcagaagcctcagtgt
ggattctgggccatcaggttgtgcagaaggagaggctatattgcacttacctatccccca
acccctctttttctgaatcctcagcccttggtggtgggagtttttctggattgtgaggcc
ggccttgtatctttttacaatatgactacaggcgtgcacatcttcaccttccccaagacc
tccttctctgatactgtccgaccctatttccaggtgtatcactgttctcctttgttcctg
cctcccccaggtgaatag
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