Ochotona princeps (American pika): 101532932
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Entry
101532932 CDS
T07609
Symbol
NPAS3
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X3
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101532932 (NPAS3)
Transcription factors [BR:
opi03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
101532932 (NPAS3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_9
PAS_4
HLH
bHLH_NPAS4
DUF7510
Motif
Other DBs
NCBI-GeneID:
101532932
NCBI-ProteinID:
XP_004584802
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Position
17:complement(35232624..36072985)
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AA seq
995 aa
AA seq
DB search
MIRIFPDFSVQVTAAXXXXXXXGVPAGAGMGRAGAAANGTPQNVQGITSYQQRITAQHPL
PNQSECRKIYRYDGIYCESTYQNLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAI
TSQLDKASIIRLTISYLKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVF
EAHLGSHILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVELTGSSVFDYVHPGDHVEM
AEQLGMKLPPGRGLLSQGTTEDGASSASSSSQSETPEPVESTSPSLLTTDNTLERSFFIR
MKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLVVVAHALPPPTINEV
RIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSHLDLL
NKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIA
QLPHLPEKTSESSETSDSESDSKDTSGTAEDNENSKSDEKGNQSENSEDPEPDRKKSGNT
CDNDMNCNDDGHSSSNPDSRDSDDSFEHSDFENPKATEDGFGALGPMHIKVERYVESESD
LRLQNCESLTSDSAKDSDSAGEAGAQASSKLQKRKKRRKRQKGGSASRRRLSSTSSPGGL
DAAAAGLDAAAAGLVEPPRLLSSPHSASVLKIKTEISEPINFDNDSSIWNYPPNREISRN
ESPYSMTKPPNSEHFPSPQGGSGGGGGNGAGGGAGGGSGGLHVAIPDSVLTPPGTDGAAA
RKTQFGTSATTGGAATAALAPVTSDPLSPPLSASPRDKHPGGGGSGGGSNGGGGGGGGGP
GASNSLLYTGDLEALQRLQAGNVVLPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTL
AMQGNLLPNAHAVNFVDVNSPGFGLDPKTPMEMLYHHVHRLNMSGPFGSAGGATGLTQMP
GGNVFTTAEGLFSTLPFPVYSNSIHAAQTLERKED
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgatccgaatctttccggatttcagcgtgcaggtgacggccgcnnnnnnnnnnnnnnnn
nnnncgggggtgccggccggcgcgggcatggggcgggctggcgccgcggccaacggcacc
ccgcagaacgtccagggcatcacgtcctaccagcagcgaataactgcccagcatcctctg
cccaaccagtcagaatgtaggaaaatctacagatatgacggaatctactgtgaatctacc
taccagaatttacaagcattgagaaaagagaaatccagagatgccgcacgctcccgccgg
ggaaaagaaaactttgagttctatgaattggccaagttgttgcctctgcccgcagccatc
accagccagcttgacaaggcgtccatcatcaggcttacaattagctacttgaagatgagg
gacttcgctaatcagggagaccccccgtggaacttgcggatggaaggccctccacccaac
acgtcagtgaaaggtgcacaacgaaggagaagccccagtgcactagccattgaagtattt
gaagcacatttgggaagtcacattttacagtcactggatggctttgtatttgcactaaat
caagaaggaaaatttttgtacatatctgaaacagtctccatctacctaggtctctcacaa
gtggagctgacaggcagcagcgtctttgactatgtccatcctggggaccacgtggagatg
gctgagcagctgggcatgaagctcccacccgggcggggtctgctctcacagggcaccacg
gaggatggagccagctcagcatcttcctcctctcagtcagagacccctgaaccagtggag
tccaccagccccagtctgctaaccactgacaacacccttgagcgttcctttttcatccga
atgaaatctacgctgaccaaacgtggcgtgcacatcaaatcatcaggatacaaggtgatt
cacatcacaggacggctccgcctcagagtgtcgctgtcccatgggaggaccgtccccagc
caaatcatgggtctcgtggttgtggctcatgccttgcctcccccaacgatcaatgaagtc
agaattgactgccatatgttcgtcactcgagtaaatatggacctcaatatcatttactgt
gaaaataggattagtgattacatggatctgacccccgtggacattgtggggaagagatgc
taccacttcatccatgccgaggacgtggagggcatcaggcacagccacctggacttgcta
aacaagggtcagtgtgtgacgaagtactatcgttggatgcagaagaatggaggatatatc
tggatacagtctagtgccaccatagctattaatgccaagaatgcaaatgaaaagaatatc
atctgggtgaattatctgcttagcaatcctgagtacaaggacaccccgatggatatagca
cagctcccccacctaccggagaagacctcagaatcctcagagacctcggactccgaatct
gactctaaagacacctcaggtactgcagaggacaacgagaactccaagtcggatgagaag
ggcaaccagtcagagaacagcgaagacccggagcccgaccggaagaagtccggcaacaca
tgcgacaacgacatgaactgcaacgatgacggccacagctccagtaaccccgacagccga
gacagcgatgacagcttcgaacactcggactttgagaaccccaaggcgaccgaggacggc
ttcggcgctctgggccccatgcacatcaaggtggagcgctacgtggagagcgagtcggac
ctgcggctgcagaactgtgagtcgctcacgtcggacagtgccaaggactcggacagcgcc
ggcgaggcgggtgcgcaggcgtccagcaagctccagaagcgcaagaagaggcggaaacgg
cagaagggcggcagtgccagccgccggcgcctgtccagcacctcaagccccggcggcctg
gatgcggctgccgccggcctggatgcggccgccgccggcctggtggagccgccacggctg
ctgtcctccccgcacagtgcctcggtgctcaagatcaagacggagatctcggaacccatc
aactttgacaacgacagcagcatctggaactacccgcccaaccgggagatctccaggaac
gagtccccctacagcatgaccaagccccccaactccgagcacttcccgtccccgcagggt
ggcagtggcggcgggggtggcaacggtgctggcggtggggctggaggtggcagcgggggg
ctgcacgtggccatccccgactcagtcctcaccccgccgggcaccgacggcgcagccgcc
cgcaagactcaatttggcacctctgccaccaccggcggcgctgccactgcggccctggcc
ccggtcacttccgacccgctatcgcccccgctgtcagcgtccccgcgggacaagcaccca
ggcgggggtggcagcggtggcggcagcaatgggggtggcggtggtggtggtggtggccct
ggcgcatccaactccttgctgtacactggggacctggaggcgctgcagaggttgcaggcg
ggcaacgtagtgctgccgctggtgcaccgggtgaccgggaccctggccgccaccagcaca
gctgcgcagagggtctacaccacaggcaccatccgctacgcgcccgctgaggtgaccctg
gccatgcagggcaacctgctgcccaacgcgcacgctgttaacttcgtggacgttaacagc
cccggcttcggccttgaccccaagacgcctatggagatgctgtaccaccacgtgcaccgg
ctcaacatgtcaggaccgttcggcagcgcgggaggcgcaaccggcctcacgcagatgccg
ggcggcaacgtgttcaccaccgccgagggactcttctccacgctgcccttccccgtgtac
agcaacagcatccacgcggcacagactctggagcgcaaggaggactga
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