Ochotona princeps (American pika): 101533583
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Entry
101533583 CDS
T07609
Symbol
RXRB
Name
(RefSeq) retinoic acid receptor RXR-beta isoform X1
KO
K08525
retinoid X receptor beta
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03320
PPAR signaling pathway
opi04659
Th17 cell differentiation
opi04919
Thyroid hormone signaling pathway
opi04920
Adipocytokine signaling pathway
opi04928
Parathyroid hormone synthesis, secretion and action
opi05200
Pathways in cancer
opi05202
Transcriptional misregulation in cancer
opi05207
Chemical carcinogenesis - receptor activation
opi05216
Thyroid cancer
opi05222
Small cell lung cancer
opi05223
Non-small cell lung cancer
opi05226
Gastric cancer
opi05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
101533583 (RXRB)
09152 Endocrine system
04920 Adipocytokine signaling pathway
101533583 (RXRB)
03320 PPAR signaling pathway
101533583 (RXRB)
04919 Thyroid hormone signaling pathway
101533583 (RXRB)
04928 Parathyroid hormone synthesis, secretion and action
101533583 (RXRB)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101533583 (RXRB)
05202 Transcriptional misregulation in cancer
101533583 (RXRB)
05207 Chemical carcinogenesis - receptor activation
101533583 (RXRB)
09162 Cancer: specific types
05226 Gastric cancer
101533583 (RXRB)
05216 Thyroid cancer
101533583 (RXRB)
05222 Small cell lung cancer
101533583 (RXRB)
05223 Non-small cell lung cancer
101533583 (RXRB)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
101533583 (RXRB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
opi03000
]
101533583 (RXRB)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
opi03310
]
101533583 (RXRB)
Transcription factors [BR:
opi03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
101533583 (RXRB)
Nuclear receptors [BR:
opi03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
101533583 (RXRB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
101533583
NCBI-ProteinID:
XP_004590316
LinkDB
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Position
12:complement(31441966..31447278)
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AA seq
538 aa
AA seq
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MSWAARPPFLPERHAAGQCGPVGVRKEMHCGVASRWRRRRPWLDPAAAAAAAAAAAGEQQ
SPEPEPGEAGRDGMGDSGRDSRSPDSSSPNPLTQGIPPPSPPGPPLPASAAPSLGGSGAP
PPPPMPPPPLGSPFPVISSSMGSPGLPPPAPPGFSGPVSSPQINSTVSLPGGGAGPPEDV
KPPVLGVRGLHCPPPPGGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTY
SCRDNKDCTVDKRQRNRCQYCRYQKCLATGMKREAVQEERQRGKDKDGDGEGAGGAPEEM
PVDRILEAELAVEQKSDQGVEGPGGTGGSGSSPNDPVTNICQAADKQLFTLVEWAKRIPH
FSSLPLDDQVILLRAGWNELLIASFSHRSIDVRDGILLATGLHVHRNSAHSAGVGAIFDR
SLSRVLTELVSKMRDMRMDKTELGCLRAIILFNPDAKGLSNPSEVEVLREKVYASLETYC
KQKYPEQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLA
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggccgctcgcccgcccttcctccccgagcggcatgccgcggggcagtgtggg
ccggtgggggtgcgaaaagaaatgcattgtggggtcgcgtcccggtggcggcggcgacgg
ccctggctggacccggcggcggcggcggcggcagcggcggcggcggccggagagcaacaa
agcccggagccggagccgggggaggctggacgggacgggatgggcgacagcgggcgggac
tcccgaagcccagatagctcctccccaaaccccctgacacaggggatccctcctccttct
cctcctgggccacccctgcccgcttcagcagctccatcccttgggggctctggggctcca
cccccgcctccaatgccaccccctccgctgggctctcccttccctgtcatcagttcttcc
atgggctcccctggcctgccccctccagctcccccaggattctccgggcctgtcagcagc
ccccagattaactccacagtgtcgctccctgggggtggggctggcccccctgaagatgtg
aagccacctgtcttaggggtccggggcctgcactgtccaccccctccaggtggccctgga
gctggcaaacggctttgtgcaatctgcggggacagaagttcaggcaaacactatggggtg
tacagctgtgagggctgcaaaggcttctttaaacgcaccatccgcaaggacctgacctat
tcgtgtcgcgacaacaaggactgcacggtggacaagcgccaacggaaccgctgccagtac
tgccgctaccagaaatgcctggccacaggcatgaagagggaggcggtacaggaggagcgt
cagcgggggaaggacaaggatggggatggggagggggctgggggagcccccgaggagatg
cccgtggacaggatcctggaggcagagcttgctgtggagcagaagagtgaccagggcgtg
gagggccctgggggaaccgggggtagcggcagcagtccaaatgatcctgtgactaacatc
tgccaggcggctgacaagcagctgttcacactggttgagtgggcgaagaggatcccacac
ttttcctccttgcctctggatgaccaggtcatattgctacgggcaggctggaatgaactc
ctcattgcttctttctcccaccggtctatcgatgtccgagatggcatcctcctggccaca
ggtcttcatgtgcatcgcaactcagcccattctgcaggcgtgggagccatctttgatcgg
tccctctccagggtgctgacagagctagtgtccaaaatgcgtgacatgaggatggacaag
acagagcttggctgcctgagggcaatcattctgtttaatccagatgccaagggcctctcc
aacccgagcgaggtggaggtcctgcgggagaaggtgtacgcgtccctggagacctactgc
aaacagaagtaccctgagcagcagggacggtttgccaagttgctgctacgtcttcctgcc
ctccgctccattggccttaagtgtctagaacatctgtttttctttaagctcattggtgac
acccccattgacaccttcctcatggagatgcttgaagctccccaccagctggcctga
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