Ochotona princeps (American pika): 101533616
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Entry
101533616 CDS
T07609
Symbol
PMS2
Name
(RefSeq) mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03430
Mismatch repair
opi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
101533616 (PMS2)
03460 Fanconi anemia pathway
101533616 (PMS2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opi03400
]
101533616 (PMS2)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
101533616 (PMS2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
HATPase_c_3
DNA_mis_repair
HATPase_c
Motif
Other DBs
NCBI-GeneID:
101533616
NCBI-ProteinID:
XP_036348842
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Position
6:complement(5400353..5431756)
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AA seq
827 aa
AA seq
DB search
MERAEGCSTELAKAIRPIDRKSVHQICSGQVVLSLSTAVKELIENSVDAGATNIELRLKD
YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQDFADLTHVSTFGFRGEALSSLCALSDV
SISTCHSSTQVGTRLVFDHNGKILQKTPCPRPRGTTVSVQQLFYPLPVRHKEFQRNIKKE
YAKMVQVLHAYCIISTGIRVSCTNQLGQGKRQPVACTSGSSSVKENIASVFGQKQLQSLL
PFVQLPPSDPVCEEYGLSCSETLHNLFHISGFISQCTHGAGRSSTDRQFFFINRRPCDPA
KDLDQKTKGPLEPPSLRLTGSAPTTQVGVVDFTQCVSFCTSECVDVNVTPDKRQILLQEE
KLLLAILKTSLMGMFDRDVNKLSVSQQPLLDMEGNFIKAHTVDVERPGPEKQASSPSAST
PGGEQRRSVSVSRLREAFSLRPASQSPEPPAPGGEQDPWVEAVSRSKSACDRVGEAGRED
VLVPSSTPADSGGRPSSPDRTASSLEDGLLQETVSQHAEASESHEKCHEQRKRLRVPSAP
AGLLSPSAKRGKLDGAPLCRGPQDRPVAQPDVAVSIRKRVVSLDFSMSSLAKRVRRLLQQ
EPSSRGEAGYRRFRARICPGENQAAEEELRKEISKTMFAEMEIIGQFNLGFIITKLQEDL
FIVDQHATDEKYNFEMLQQHTVLQGQRLIAPQPLHLTAVNEAVLLENLEVFRKNGFEFVI
DEGAPVTQRAKLVSLPTSKNWTFGPQDIDELLFMLSDSPGVMCRPSRVRQMFASRACRKS
VMIGTALSPSEMKQLVTRMGQMEHPWNCPHGRPTLRHVANLAVLSQQ
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atggagcgagctgaaggctgcagcacagagcttgccaaggccatccgacccatcgaccgg
aagtcagtccatcagatttgctctgggcaggtggtactgagcctcagcacggccgtgaag
gagctgatagaaaacagcgtggacgcaggcgccaccaacatcgagctaagactgaaagac
tacggggtggatctcattgaagtttcagacaacggatgtggagtggaagaagaaaacttc
gaaggcctaaccctgaagcaccacacttctaagattcaagacttcgctgacctcacacac
gtctcgaccttcggcttccggggggaagctctgagctcgctctgcgccctgagtgacgtg
agcatctccacctgccactcgtcgacacaggttggcacccgcctggtatttgaccacaat
gggaaaatcctccagaaaacgccctgtccacgaccccgagggaccacagtcagcgtgcag
caactgttctatccgctgcctgtgcgccacaaggaatttcagaggaatattaagaaggag
tatgccaaaatggtccaggtcctccacgcgtactgcatcatttcaacgggcatccgtgtc
agctgcaccaaccagctgggacaaggcaagcgacagcctgtggcgtgcaccagtggcagc
tccagcgtgaaggagaacatcgcgtctgtgtttgggcagaagcagttacaaagcctcctg
cccttcgtgcagctgccccctagcgaccccgtctgtgaggagtacggcctcagctgctct
gagacgctgcacaacctcttccatatctcaggtttcatatcccagtgcacccacggtgct
ggaaggagctcaaccgacagacagtttttcttcatcaatcgacggccttgtgacccagcc
aaggacctggaccagaagaccaaaggcccactggaacccccatccctgaggctcacgggt
tcagcacccaccacacaggtgggcgtggtggacttcacacagtgcgtttccttctgcacc
tcagaatgtgtcgacgtgaatgtgaccccagacaaaagacagatcttactgcaagaggag
aagcttctgttggccattttgaagacctctctgatggggatgtttgacagagacgtgaac
aaactcagtgtcagccagcagcctctgttggatatggaaggcaacttcataaaagcacac
acggtggacgtggagagacctggcccagagaagcaggccagctccccttcggccagcacc
ccgggcggggagcagaggaggtcagtgtctgtctccaggctgagagaggccttctcgctc
cgtccggcatctcagagcccagagcctcctgcgcctggaggcgagcaggacccttgggtg
gaggccgtgagtcgcagcaagagtgcctgtgaccgtgtgggtgaggcaggcagagaggat
gtcttggtgcctagcagcaccccagctgactcggggggcaggcccagcagcccggaccgt
acagcaagttccctggaagacggactcttgcaggaaaccgtgtcacagcacgcagaggcc
tcagagtcccacgagaagtgccacgaacaacgaaaacgcctccgagtcccatctgcacct
gctggcctcttgtctccaagcgccaagcgtgggaagctggacggtgctcccctctgcagg
ggcccgcaggacagaccggtggctcagcctgacgtggccgtgagcatccggaagcgtgtc
gtgtccctggacttctccatgagctccttggctaagcgggtgaggcgcttgctgcagcag
gaaccgtcgagccgaggcgaagccggctaccggaggttccgcgccaggatctgccccggg
gagaaccaggctgccgaggaggagctgaggaaggagatcagtaaaacgatgttcgcggag
atggaaatcatcggtcagttcaacttggggttcatcatcaccaaactgcaagaggacctc
ttcatagtggaccagcacgccacagacgagaagtacaacttcgaaatgctgcagcagcac
acggtgctccagggccagcggctcatagcgccgcagcccctgcacctgaccgctgtcaac
gaggccgttctcctggagaacctggaggtcttccgcaagaacggctttgagttcgtgatc
gatgaaggcgctccggtcacccaaagggctaagctggtgtctctgccgaccagtaagaac
tggacctttgggccgcaagacatagatgagctgctcttcatgctgagcgacagccctgga
gtcatgtgtcggccgtcgcgcgtccgccagatgtttgcctccagagcctgccgcaagtct
gtgatgattggcaccgcgctgagccccagcgagatgaagcagctggtcacccgcatgggg
cagatggagcacccctggaactgtccccacggaaggcccacgctgcggcacgtcgccaac
ctagccgtcctttctcagcagtga
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