Ochotona princeps (American pika): 101533878 Help Entry 101533878         CDS       T07609                                  Symbol COL7A1 Name (RefSeq) collagen alpha-1(VII) chain   KO K16628   collagen type VII alpha Organism opi  Ochotona princeps (American pika) Pathway opi04382   Cornified envelope formation opi04974   Protein digestion and absorption Brite KEGG Orthology (KO) [BR:opi00001]  09150 Organismal Systems   09154 Digestive system    04974 Protein digestion and absorption     101533878 (COL7A1)   09158 Development and regeneration    04382 Cornified envelope formation     101533878 (COL7A1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen fn3 VWA Pur_ac_phosph_N VWA_2 Kunitz_BPTI Ig_DSCAM-DSCAML_C DUF4992 FN3_Tor_3rd Motif Other DBs NCBI-GeneID:  101533878 NCBI-ProteinID:  XP_004581802 LinkDB All DBs Position 9A:complement(17055380..17084591) Genome browser AA seq 2931 aa AA seqDB search MRLWPLVATLCAGILAGAPRVQAQARERVTCTRLYAADIVFLLDGSSSIGRNNFREVRAF LEGLVLPFSGAAGAQGVRFAIVQYSDDPRTEFGLDALGSGGDVIRAIRELSYKGGNTRTG AAILHVADHIFLPQLARPGIPKVCILITDGKSQDQVDVAAQRLKGQGVRLFAVGIKNADP EELQRVASQPATDFFFFVNDFSILRTLLPLVSRRVCTTAGGIPVTLPTDDSTSGPRDLVL SEPGSQSLKVQWMAASGPVTGYKIQYTPLTGLGQPRASERREVNVPAGETSTWLQGLRPL TEYQVTVVALYANSIGESVSGTARTTALEGPELTIQNTTAHSILVAWRSVPGATGYRVTW RDLHGGAPQQQELGPGQGSVLLRDLEPGTNYEVTVSTLLGRSVGPATSLTARTGPSVEQI LRPVILSPTSILLSWNLVPEARGYRLEWQRERGSEPPQRVLLPSDVTRHQLDGLQPGTEY RLTLYTLLEGREVATPATVVPTGQEQPVGPVTNLKATELPGQRMQVSWSPVPGATEYRVT VRSTHGVERSLLLPGSQTEFDLDDIRPGLSYTVRVSARVGARDGSASVLTVRREPETPLA VPGLRVVASDMMRVRVTWGPVPGASGFRISWRTGSGPESSRTLPADSTVADLAGLQPGTT YQVAVLALRGRDEGPPAVIVARTDPLGAVRTVHVTQAGSSSITIAWSRVPGATGYRVSWH SDRGPERSQLVSGEATVAELDGLEPDTEYTVHVRAHAVGVDGAPASVVVRTVPEPVGSVS KLQILNASSDVLRITWVGVSGATAYRLAWGRSEGGPMTHEMLPGNTESAEIRGLQGGVSY SVRVTALVGDREGSPVSIVVTTPPEAPTPLETLRVVQRGEHSLRLLWEPVHGAHGFRLRW RPEGGQEQFRLLGPDLNSYLLDGLEPATQYRIWLSVLGPAGEGPAREVTTRTELPRVPST ELRVVDTSIDSVTLAWIPVSGASSYILSWRLLRGSGQEVAAAPQTLPGTSGSQRVTELEP GHTYVFSLTPVREGVRGPESSITQSPGCPRGLADVVFLVHATRDNVHRAGAVRRVLERLV SALGPLGPQAVQVGLLSYSHRPSPLFPLNSSHEPSVLLQKIQDIPYMDPSGNNLGTAVVT THRYLLAPDAPGRRPQVPGVMVLLVDEALRGDVFSSIREAQAAGLQVVMLGLAGADPEQL RRLVPGMDPIQTFLAVDDGASLDRAVSDLAVALCQVSMLTQPQPEDCSVHCPKGQKGEPG QTGLPGHAGPPGPPGLPGRTGAPGPQGPPGRTNAKGERGFPGVDGLPGSPGHPGTPGAPG LPGPKGSSGPRGEPGEPGPRGSKGEPGEPGRVIGTGRLGLPGQKGDAGPSGPPGPRGPSG DPGPRGPPGLPGAVVKGDKGDRGERGPPGPGLGDTLSGEPGLPGLPGSPGPQGPVGPVGE KGEKGDCEDGMPGLPGQAGAPGERGPRGPPGVIGPKGDRGLPGALGETGEKGERGPPGLA GPQGLPGLVGRPGAEGPEGPPGPPGRRGEKGEPGQPGDPAVVGPGSDGVKGEKGDVGPTG PRGAAGVKGERGPPGLALPGDPGPKGDSGDRGPIGLTGRAGPPGDMGPSGEKGDPGRPGP AGPVGPRGRDGEAGEKGDEGPPGDPGLPGKAGERGLRGPPGVRGPAGEKGDQGDPGEDGR NGSPGPSGPKGDRGEPGPPGPPGRLVDAGLGAREKGEPGDRGQEGPRGPKGDPGPPGVPG ERGADGLRGPPGPQGDTGVRGPVGEKGDRGPPGLDGRSGLDGKPGSPGPPGLNGAVGKTG DPGRDGLPGLRGEHGPPGPPGSPGALGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDPG TPGREGRDGLKGERGAAGSPGPQGPPGLPGQVGPPGQGFPGVPGSVGLKGDRGETGSKGE QGLPGERGPRGEPGSMVNVERLLETAGIKPSALREIVESWDESSGGFLPIPERRRGPKGD PGERGPSGKEGPIGFPGERGLKGERGDPGPQGPPGLALGERGPPGPPGLAGEPGKPGIPG LPGQTGTAGEAGRPGERGERGEKGAPGEQGRDGPPGPPGPPGPPGPKVPMDESGPRASGE QGPPGLKGAKGEPGSDGDRGPKGDRGMPGTKGEQGDPGQRGHNGIPGLPGERGVAGPEGK PGSQGLRGPPGTAGNHGDPGPPGAPGLAGPPGPQGPSGLKGEPGETGPPGRGLPGPTGAV GLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGTNGKDGDRGNPGVPGSPGLPGPV GPKGEPGPVGAPGQVVVGPPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGR AGEPGDPGEDGQKGAPGLKGHKGDPGVGLQGSPGPAGPPGIKGDLGPQGPPGAPGVVGFP GQPGPRGEMGQPGPVGERGLAGPPGREGAPGLLGPPGSPGSAGVPGAAGVKGDKGDPGAG PPGPRGERGEPGIRGEDGRPGQEGPRGLMGPPGNRGERGEKGDAGTAGLKGDKGDSAVAV GPPGPPGAKGDMGERGPRGMDGDKGPRGDSGDPGDKGSKGEPGAKGSAGLLGARGLTGPK GEPGAAGLPGEPGSPGKDGVPGVRGDKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEA GHPGRPGLAGHKGEMGEPGMPGQTGAPGKEGLIGPKGDRGFDGQPGPKGDQGEKGERGPP GVGGFPGPRGNEGSPGLPGPPGSVGPKGPEGLQGQKGERGPPGESVVGAPGAPGTPGERG EQGRPGPTGPRGQKGEAALTEGDIRAFVRQEMSQHCACQGQFSASGSRPLPSYAADTADH QLHPVPVLRVSHVEEEAQRPPEDDEYSEYSEYSVEEYQDPEVPWDASDPCSLPLDEGSCT AYTLRWYHRAGLDGTEACRPFVYGGCGGNANRFGTLEACKRRCQPHVTRGP NT seq 8796 nt NT seq  +upstreamnt  +downstreamnt atgaggctgtggcctctagtggccacgctctgtgctgggatcctggcaggggcgccgcga gtgcaagcccaggctagggagagagtgacctgcacgcgcctttacgccgcggacatcgtg ttcctgctggacggctcctcatccattggccgcaacaacttccgcgaagtgcgggccttc ctcgaaggattagtgctgcctttctcgggggcagccggggcgcagggcgtgcgcttcgcc atagtgcagtacagcgatgacccgcggacagagtttggcctggatgccctggggtctgga ggcgacgttatccgtgccatccgtgagctcagctacaagggcggcaacactcgtacaggg gctgcgatcctgcatgtggctgatcacatcttcttgccccagctggcccggcctggcatc cccaaggtgtgcatcctcatcacagatggcaagtcccaggaccaggtggatgtggctgcc cagaggctgaaggggcagggggtcaggctgtttgctgtagggatcaagaacgccgaccct gaggagctgcaacgagtagcctcacagcccgccaccgacttcttcttcttcgtcaatgac ttcagcatcttacggaccctgctgccgctcgtctcacggagggtgtgcacaacagctggt ggcatcccagtgacactccccacggatgactcaacatcgggtccacgggacctggtgctg tccgagccaggcagccagtccttgaaagtgcagtggatggcagccagtggccctgtgact ggctacaagatccagtacacccctctgacagggctgggacagccgcgggccagcgagcgg cgggaggtgaatgttccagccggtgagactagcacgtggcttcaaggcctccgaccactg accgagtaccaagtgaccgtggttgccctgtatgccaacagcatcggggagtctgtgagt gggacggctcggaccactgccctggaaggcccagagctgaccatccagaacaccacagcc catagcatcctggtggcctggcggagcgtgccaggtgccactggctaccgtgtgacctgg cgggacctccatggtggagccccccagcaacaggagctgggccccgggcaggggtcagtg ttactgcgggacctggagcctggcaccaactacgaggtgaccgtgagcaccctgcttggc cgtagtgtggggcctgccacttccctgacagcccgaactggcccctccgttgagcagatc ctgcgccctgtcatcctgagccccacatccattctcctatcctggaacttggtacccgag gcccgaggctaccgtctggagtggcagcgtgagaggggctcagagccgccacagagggtg cttctgccctctgatgtgactcgccaccagctggatgggctgcagccaggcaccgaatac cgcctcaccctctacactctgctggaaggccgcgaagtggccacccccgccaccgtggtt cccactgggcaggagcagcctgtgggtcctgtgacaaacctgaaggccactgagctgcct gggcagcgaatgcaagtgtcctggagccctgtccctggggccaccgagtaccgagtcact gtgcgcagcactcacggggttgagcggtccctgttgctccctggaagtcagacagagttt gacctagatgacatccggcctggactcagctacacggtgcgggtgtctgctcgtgtgggt gcccgtgatggcagtgccagtgtgctcacggtccgccgtgaaccagaaaccccacttgcc gtaccagggctgcgtgtggtagcatcagacatgatgcgagtgcgggtgacctggggaccg gttcccggagccagcggtttccggatcagctggaggacaggcagtggtccggagtccagc cggacgctgcctgcagactccactgtggctgacctcgcggggctgcagcctggcaccaca taccaggtggctgtgttggcactgcgcgggagagatgagggcccaccggcagtcattgtg gctcgaactgacccactgggtgctgtgaggacggtccatgtgactcaggctggcagctct tccatcaccattgcttggagcagggttcctggtgccacaggatacagggtgtcctggcac tcagaccgtggccctgagcgttctcagctggtgtctggggaggccacggtggctgagctg gatgggctagagccagacacggagtatacagtgcatgtgagggcccatgcagtgggcgtg gatggggcccctgcctctgtggtcgtgagaacagtccctgaaccggtgggcagtgtgtcc aagctgcagatcctcaatgcttccagtgacgttctgcggatcacctgggtgggagtcagt ggagccacagcctacagactggcctggggtcggagtgaaggtggccccatgacacacgag atgctcccaggaaacacagagtctgcagagatccgaggtctccaaggaggagtcagctac tccgtgcgagtgaccgcgctggttggggaccgagaaggctcacctgtctccattgtagtc accacgccaccggaggctcccacacccctggagactcttcgtgttgtgcagcgtggggag cactcgctgagattgctctgggagccggtgcatggcgcgcacggcttccgtctgcgctgg cgacccgaaggtggtcaggagcagttccggcttctgggacccgacctgaacagctacctg ctggatgggttggagccagcgacgcagtaccgcatctggctgagtgtgctggggccagct ggggaaggccctgccagggaggttacgacgcgcacagagttaccccgggtccccagcacc gaactacgagtggtggacacgtcgattgactcggtgacactggcctggataccagtgtcc ggagcctccagctatatcctctcctggaggctgctccgaggctcaggccaagaagtggcc gcagcgccccagacacttcctgggacctcgggctcccagcgtgtgacagaactggagccg gggcacacctacgtcttctccctcacgcctgttcgggagggcgtgcggggtcctgagagc tccatcacacagagcccagggtgtcctcgtggcctggcagatgtggtcttcttggtgcat gccacgcgggacaatgttcatcgcgcaggggccgtgaggcgggtcctagagcgtctggtg tctgcattgggacctctggggccacaggcagtccaggttggcctgctgtcctatagtcat cggccctccccgctctttccgctgaacagctcccatgagcccagtgtcctcttgcaaaag atccaggacatcccctacatggacccaagtgggaacaacctgggcacggctgtggtcacc acgcacaggtacctgctggcgccagatgctcctgggcgccgtccacaggtgccaggagtg atggttctgctcgtggatgaggccctgagaggcgacgtcttcagctccatccgagaggcc caggcagctggtctccaggtggtgatgctgggcctggcaggagctgacccagagcagctg cgtcgcttggtaccaggcatggaccccatccagaccttcctggctgtggatgatggtgcg agcctggaccgagcagtcagtgatctggcagtagccctgtgccaggtgtctatgctcact cagccacaaccagaggattgctcggtgcattgcccgaagggccagaagggggagcctgga cagacgggcctgccaggacacgctgggcctcccggcccccccggcctcccgggcaggacc ggtgctcctggcccccaggggcccccgggaaggaccaacgccaagggcgagaggggcttc cctggagtggatgggcttccaggcagccctggccaccctgggactcctggagcccccggc ttgcctgggccaaaggggtcatccggtccccgaggggaaccgggagagccagggcctcga ggctcgaaaggagagccgggagagccaggacgagtaattggaaccggaagactggggctg cctggccaaaaaggcgacgctggaccttctggcccccctggaccccgtggcccatcaggc gacccaggaccccgtggtcccccaggacttcctggagcagtggtgaagggtgacaaaggt gatcgtggggaacggggtccccctggaccaggtctgggtgacactctttctggggagcct gggctgccgggacttcctggaagcccaggaccccaaggcccagtggggcccgtgggagag aaaggagaaaagggtgactgtgaagatggcatgccaggcctcccaggacaagctggggcc ccaggagagcggggcccaaggggacctcctggagtcattggccccaaaggcgatcgaggg ctgccaggggccctgggtgagactggagagaaaggcgagcgtggaccccccggcctagca ggacctcagggactgccggggctggtaggccggcctggagctgagggtcctgaaggacca ccaggacccccgggccgccgaggagagaagggagaacctggtcagccaggagaccctgca gtggtgggacctggcagtgatggagtcaaaggagagaagggagatgtggggcccactggg cccagaggagctgctggagtgaaaggggaacggggcccacctggattggcgctccctgga gaccctggccccaaaggagactctggagaccggggccccattggcctcactggcagagca ggaccccccggtgacatggggccttctggggaaaaaggagaccctgggcgacctggccct gcaggacctgtcgggccacgaggacgagatggtgaagctggggagaaaggtgacgagggc cccccgggagacccaggtttgcccggcaaagcaggagagcgaggccttcgggggccgcct ggagttcgggggcctgcgggtgagaagggagatcagggagatcctggagaagatggccgc aatggcagccctggaccatccgggcccaagggtgaccgaggggagccgggccccccagga cctcctggacggctggtggacgcaggacttggagccagagagaagggagagcctggtgac cgtggacaggaaggtcctcgaggacctaagggtgatcccggccctcctggagtccctggg gagaggggtgccgacgggctccgggggcccccaggaccacagggagacacaggtgtcaga ggcccagtaggagagaagggagaccgaggccccccaggactagatggccggagtggactg gatggcaaaccaggatcccctgggcccccggggctgaatggtgctgtgggcaaaactggg gacccagggagagacgggcttccaggcctccgaggagagcatggacctcctggccctcct gggtcccccggagccctgggaaagccaggcgaggatggcaagcctggcctaaacgggaaa aatggagaacctggggaccctggagaagacgggagaaagggagaaaagggagatccaggc acccctgggagagaaggtcgcgatggcctcaagggtgaacgtggagctgcaggtagcccc ggtcctcagggtcctccaggcctccccggacaagtcggccctcctggccagggttttcct ggcgtcccaggcagtgtgggcctcaagggtgaccgtggagagactggatccaaaggggag cagggccttcctggagagcgcggcccccgaggagaacctgggagtatggtgaatgtggaa cggctgctggaaacagctggcatcaagccgtctgccctgcgggagatcgtggagagctgg gatgagagttctggtggcttcctgcccataccggagcggcgccgtggccccaagggggac ccgggtgaacgaggtccctcgggcaaggagggccccattggcttcccaggagaacgtggg ctgaagggagagcgcggagaccctgggcctcaggggccaccaggcctggcccttggtgag agaggccccccggggccacctggccttgccggagagcctggaaagcctgggattcctggg ctcccaggccagactgggactgcaggagaggcaggaaggccaggagagaggggagaacgg ggtgagaagggggcccctggagagcagggcagagacggccctcctggacctcctggacca cctggccctcctgggcccaaggtacctatggacgagtcaggtcccagagcctctggagag caaggacccccgggactcaagggcgccaagggggagcctggcagcgatggtgaccgaggc ccaaaaggagacaggggtatgccaggcaccaagggagagcagggagatcctggacagagg gggcacaatggcatcccgggtctgccaggagagcgaggagtggctgggcctgaggggaag ccgggttcgcagggtctgagggggcctcctggaacagctggtaatcatggagaccctgga ccccctggtgccccgggtctcgctggtcctccgggacctcagggaccttctggcctgaag ggggagcctggagagacggggcccccaggacggggcttgcctggacccactggagctgtg ggacttcctggccccccaggcccttcaggccttgtgggtccacaaggttccccaggtttg cctggacaagtgggggagacagggaagcctggagctccaggtcgagatggcaccaatgga aaagatggggaccgaggaaaccctggggtcccagggtcaccaggtctgcctggccccgtg ggacctaaaggagaacctgggcctgtgggagcccctggacaggttgtggtcgggccccca ggagccaagggagagaagggagcccctggaggccttgccggagacctggtgggggaaccg ggagccaaaggtgatcgaggactgccagggccacggggcgagaagggggaagctggccgt gcaggggaacccggagaccctggagaagatggtcagaaaggagctccagggctgaaaggt cacaagggtgacccaggagttgggctccaaggctcccctgggccagctggtcctcccggc atcaagggagatctcgggccccagggcccccccggtgctcctggtgttgtggggttccct gggcagccaggccctcgtggggagatgggtcagcctggtccagtcggagagcggggtcta gcaggccctccaggcagagaaggtgccccgggcctcttgggtccacctggatcaccaggg tctgcgggtgtgcctggggctgccggtgtcaaaggagacaagggagaccctggagcaggg ccacccgggccccgaggcgagcgaggcgaaccaggcatccggggtgaagatggccgccct ggccaggagggaccccgtggactcatggggccccccggcaaccggggcgagcgtggggag aagggggatgcgggcactgctgggctaaagggtgacaagggtgactcagctgtggccgtt gggcctccgggtccaccaggagccaagggggacatgggtgaacgagggcctcggggcatg gatggtgacaaaggacctcggggcgacagtggggaccctggtgacaagggcagcaaggga gagcctggagccaagggttcagctgggttgctgggagctcgtggactgacaggacccaag ggtgaacctggtgctgcagggctccctggcgagccgggatctccaggaaaggatggagtc cctggtgtcagaggtgacaagggcgatgttggcttcatgggtccccggggcctcaagggt gaacggggagtaaagggagcctgtggcctggatggcgagaagggggacaagggagaagcc ggtcaccctggccggcctgggctggcaggacacaagggagagatgggggagcctggcatg cctggccagactggagcccccggcaaggagggcctgatcggtcccaagggtgaccggggc tttgatgggcagcctggccctaagggtgaccaaggagagaaaggggagcgggggccccca ggagttgggggcttcccaggcccaaggggcaatgaaggctctccaggtctccctgggcca cctgggagtgttggtcccaaaggccccgaaggactccagggccagaagggtgaacgaggt cctcctggagagagtgtggtgggggctcccggggcacctgggaccccaggggagagaggt gagcaggggcggccagggcctaccggccctcgtggccagaagggagaagctgctctgaca gagggtgacatccgggcctttgtgcgtcaggagatgagtcagcattgtgcctgccagggc cagtttagtgcgtctggatcacgacccctccctagttatgctgcagacactgccgaccac cagctacaccctgtgcctgtactacgggtctctcatgtggaggaggaagcccagaggccc cctgaggatgatgagtactctgagtactcagagtattctgtggaggagtaccaggaccct gaggtgccctgggatgccagtgacccctgttcgctgcccctggatgaaggctcctgtact gcttacaccctgcgctggtaccaccgcgctgggctcgatggcactgaggcctgtcggccc tttgtttacggaggctgtggaggaaatgccaaccgctttgggactcttgaggcctgtaag cggcgctgccaaccccatgtgacccggggcccctga

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