Ochotona princeps (American pika): 101533885
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Entry
101533885 CDS
T07609
Symbol
CHD8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
101533885 (CHD8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101533885 (CHD8)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101533885 (CHD8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_CHD1_Hrp3
MUN
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
101533885
NCBI-ProteinID:
XP_004584719
LinkDB
All DBs
Position
17:45445382..45490684
Genome browser
AA seq
2581 aa
AA seq
DB search
MADPIMDLFDDPNLFGLDSLTDDSFNQVTQDPIEEALGLPSSLDSLDQMNQDGGGGDVGN
PSASDLVPPPEETAPTDLPKESTAPAPESLTLHDYTTQPASQEQPAQPVLQTSTPAPGLL
QVSQSQEILSQGNPFMGVSAAAVSSSSTGGQPPQSAPKIVILKAPPTSSVTGAHVAQIQA
QGITSTAQPLVAGTANGGKVTFTKVLTGTPIRQGVSIVSGNTVLAAKVPGNQAAVQRIVQ
PSRPVKQLVLQPVKGAAPASNPGATGPPLKPAVTLTSTPTQGESKRITLVLQQPQSGGPQ
GHRHVVLGSLPGKIVLQGNQLAALTQAKNAQGQPAKVVTIQLQVQQPQQKIQIVPQAPSS
QPQPQQPPSTQPLTLSSVQQAQIMGPGQSPGQRLSVPLKMVLQPQAGSSQGASSGLSVVK
VLSASEVAALSSPANAAPHAGKTGLEENRRLEHQKKQEKANRIVAEAIARARARGEQNIP
RVLNEDELPSVRPEEEGEKKRRKKSGGERLKEEKPKKSKTSGTSKTKGKSKLNTITPVVG
KKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEE
VDVTGPIKPEPILPEPVQEPDSETLPSMQFFVENPSEEDAAIVDKVLSMRVVKKELPSGQ
YTEAEEFFVKYKNYSYLHCEWATISQLEKDKRIHQKLKRFKTKMAQMRHFFHEDEEPFNP
DYVEVDRILDESHSIDKDNGEPVIYYLVKWCSLPYEDSTWELKEDVDEGKIREFKRIQSR
HPELKRVNRPQASAWKKLELSHEYKNRNQLREYQLEGVNWLLFNWYNRQNCILADEMGLG
KTIQSIAFLQEVYNVGIHGPFLVIAPLSTITNWEREFNTWTEMNTIVYHGSLASRQMIQQ
YEMYCKDSRGRLIPGAYKFDALITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLL
DSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFLKDFGDLKTEEQVQKL
QAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLSKGAGHTNM
PNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKL
LPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSD
RFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRN
SYEREMFDKASLKLGLDKAVLQSMSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDE
GSKFCEEDIDQILLRRTTTITIESEGKGSTFAKASFVASENRTDISLDDPNFWQKWAKKA
DLDMDLLNSKNNLVIDTPRVRKQTRHFSTLKDDDLVEFSDLESEDDERPRSRRHDRHHAY
GRTDCFRVEKHLLVYGWGRWRDILSHGRFKRRMTERDVETICRAILVYCLLHYRGDENIK
GFIWDLISPAENGKTKELQNHSGLSIPVPRGRKGKKVKSQSTFDIHKADWIRKYNPDTLF
QDESYKKHLKHQCNKVLLRVRMLYYLRQEVIGDQAEKVLGGAIASEIDIWFPVVDQLEVP
TTWWDSEADKSLLIGVFKHGYEKYNTMRADPALCFLEKAGRPDDKAIAAEHRVLDNFSDI
VEGVDFDKDCEDPEYKPLQGPPKDQDDEGDPLMMMDEEISVIDGDEAQVTQQPGHLFWPP
GSALTARLRRLVTAYQRSYKREQMKIEAAERGDRRRRRCEAAFKLKEIARREKQQRWTRR
EQTDFYRVVSTFGVEYDPDTMQFHWDRFRTFARLDKKTDESLTKYFHGFVAMCRQVCRLP
PAAGDEPPDPNLFIEPITEERASRTLYRIELLRRLREQVLCHPLLEDRLALCQPPGPELP
KWWEPVRHDGELLRGAARHGVSQTDCNIMQDPDFSFLAARMNYMQNHQAGAPAPSLSRCS
TPLLHQQYTSRTASPLSLRPDAPVEKSPEETAAQVPSLESLTLKLEHEVVARSQPTPQDY
EVRVAPSDTTPLVPRSIPPVKLEDEDDSDSELDLSKLSPSSSSSSSSSSSSSSTDESEDE
KEEKLTADHSRSKLYDEESLLSLTMSQDGFPNEDGEQMTPELLLLQERQRASEWPKDRVL
INRIDLVCQAVLSGKWPSSRRNQEAIAGGMLGPGNHLLDSPSLTPGEYGDSPVPTPRSSS
AASMAEEDTSAVTTAAAQFTKLRRGMDEKEFTVQIKDEEGLKLTFQKHKLMANGVIGDGH
PLFHKKKGNRKKLMELEVECMEEPNHLDVDLETRIPVINKVDGTLLVGEDAPRRAELEMW
LQGHPEFAVDPRFLAYMEDRRKQKWQRCKKNNKADLNCLGMEPVQTANSRNGKKGHHAET
VFNRVLPGPVAPESSKKRTRRMRPDLSKMMALMQGGSTGSLPLHNTFQHGSSGLPSVSSL
GHSSATSASLPFMPFVMGGAASSPHVDSNTMLHHHHHHPHPHHHHHHHPGLRATGYPSSP
ATTTSGTALRLPPLQPEEDEEEDEEEDDDLSQGYDSSERDFSLIDDPMMPANSDSSEDAD
D
NT seq
7746 nt
NT seq
+upstream
nt +downstream
nt
atggctgaccccatcatggatctgtttgatgacccgaatttgtttggcctggattctctg
actgatgacagttttaaccaggtcacccaagaccccatcgaggaagcacttggattgcca
agctctctggactccttggatcagatgaaccaagatggtggaggtggtgatgtggggaat
ccttcagcaagtgacctggtccccccaccagaggaaacagcccccacagaccttcccaaa
gaatccacagctccagctcctgaatccttaaccttgcatgattataccactcagcctgcc
agccaggagcagccagcccaacctgtcctacagacgtcgacgccagcaccaggactttta
caggtctcccagagccaggagatcctgagccaagggaatcctttcatgggagtctctgct
gcagctgtttcctccagtagcactggaggacaaccacctcaatccgcccctaagattgtt
atccttaaggccccaccaacttcctcagtcactggtgcccacgtggcacaaattcaggcc
caaggtatcaccagcacagcccagcccctggtggctggcacagccaatggtggaaaagtc
actttcaccaaagtgctaaccggcacacccattcgacaaggtgtttccattgtctctggt
aatacagtgttggccgccaaggtccctgggaaccaggctgctgttcagcgcattgtccag
cccagccgaccagtaaagcagctggtcctccagccagttaagggtgcagctcctgctagc
aaccctggggccacagggccccccctgaagcctgcagttacactgacctctacacctacg
cagggtgaatcaaagcgcatcaccctggtcctccagcagccacagtctggaggtccccaa
ggacatcggcatgttgtgctagggagcctaccaggcaagatagtattacagggcaaccag
ttggcagccctgactcaagccaagaatgcccaggggcagcctgccaaagtagtaactatc
cagctgcaggtgcaacagccacagcaaaaaatccagattgtaccacaagctccatcgtca
cagccccagccccagcagccaccttcaacccaaccacttactctatcctccgtgcagcag
gctcagataatgggaccaggacaaagtccaggacaaagactttcagtaccactgaaaatg
gtactgcagccacaggctggctcttcccaaggggcctcttctggtctctctgtggttaaa
gttctaagcgccagtgaagtggcagctctgtcatcaccagcaaatgctgctcctcacgcg
ggaaagacaggattggaggaaaaccgaaggttggagcaccagaagaagcaagagaaggct
aaccggattgtggcagaggccatcgccagagctcgtgcccggggggagcagaacatacct
cgcgtcctgaatgaggatgagttgcccagtgttcggccagaggaggaaggtgagaagaaa
cgtaggaagaagagcggtggggagaggctgaaggaggaaaagccaaagaaaagcaaaaca
tctggaacctccaaaactaagggcaagagtaaactcaacaccattacacccgtagtaggt
aagaagagaaaacgtaatacctcatctgataattctgatgtggaagtcatgcctgcacaa
tcaccccgggaagatgaagaaagcagcattcagaaaagacgctcaaatcgccaagtaaag
cgaaaaaaatacactgaggacctagatataaaaatcacagatgatgaagaagaagaagag
gtagatgtaactggaccaataaaacctgagcctatcctccctgaacctgtccaagaacca
gacagcgagactttgccttccatgcagttctttgtggagaatcctagtgaagaagatgca
gccattgtagacaaagtgctttctatgcgggttgtgaagaaggagcttccttctggacaa
tacactgaagccgaagaattctttgtcaagtacaagaactactcctatctgcactgtgaa
tgggctactatctcccaactagagaaagataagaggattcaccagaaactaaagcgcttc
aaaaccaaaatggcacagatgagacacttcttccatgaggatgaagagccctttaatcca
gactacgtagaggtggataggatattagatgagtctcacagcattgacaaggacaatgga
gagcctgtaatttactacctagtgaaatggtgctctctgccttatgaagatagtacatgg
gaactgaaagaggatgttgatgaaggcaagattagagaatttaaacggatccaatcaagg
cacccagaactcaaaagagtgaatcgccctcaggcaagtgcctggaagaagttggagcta
tctcatgaatataaaaacagaaaccagttacgggaatatcagttggaaggggtcaattgg
ctactttttaattggtataacaggcagaactgcatcttggctgatgagatgggattgggt
aaaactattcagtccattgccttcttacaggaggtatataatgtgggcatccatggccct
ttcttagttattgccccactgtcaacaattaccaactgggagcgagaattcaatacatgg
actgagatgaacacaattgtgtatcatggcagtctggccagtcggcagatgattcagcaa
tatgaaatgtactgcaaggattcacgggggcgcctcataccaggtgcatacaagtttgat
gccctcatcaccacttttgagatgattctgtcagactgtcctgagcttcgtgagattgag
tggcgttgtgtcattattgatgaggcccatcgactgaagaaccgtaactgcaagctgctg
gatagtctcaagcacatggacctggaacataaagtgttactcacaggaacaccattgcag
aatactgtggaggaactgtttagtttgcttcatttcttggaaccttcacagttcccatca
gaatcagaattcctcaaggactttggagacctgaagacagaggaacaggttcaaaaacta
caggccattctcaagccaatgatgctaagaagacttaaagaagatgttgaaaaaaacttg
gcacccaagcaggaaaccattattgaggtagaactgactaacatccagaagaaatactac
agggctattttggaaaagaatttctccttcctttccaagggggcaggtcacaccaacatg
ccgaatcttctcaacacaatgatggagttgcgcaaatgctgcaaccacccatatctcatc
aatggtgcagaagaaaaaatcctaactgaatttcgagaagcttgccacattatacctcat
gacttccatctgcaggccatggttcgttctgctggcaaattggttcttattgacaagtta
cttccaaaacttaaagctggcggccataaagtgctgatcttctcccagatggtacgctgc
ctagatatcctagaggattatctaatccagaggaggtacttatatgaacgtattgatggg
cgggttagaggcaaccttcggcaggctgctattgaccggttcagcaagcctgactcagac
cgttttgtcttcttattgtgcacacgtgctggtggacttggtattaatcttactgctgct
gacacatgcatcatttttgattctgactggaacccacaaaatgaccttcaggcccaagca
cgatgtcatcgaattgggcagagcaaagctgtgaaagtgtatcgtctcatcacgcgtaat
tcgtatgagcgagagatgtttgataaggctagcctcaagttgggattggataaggctgta
cttcagtctatgagtggtcgagatggcaacatcactggaatccaacaattttctaagaaa
gaaattgaagatctcttaagaaaaggggcatacgcagccataatggaagaagatgatgag
ggctccaagttttgtgaagaagatattgaccaaattttgttaagacgaactacaaccatt
accattgaatctgaaggaaaaggttcaaccttcgctaaggcaagctttgttgcttctgaa
aatagaacagacatttctctagatgaccccaacttttggcagaagtgggccaaaaaggca
gacctagacatggatctgctgaatagcaagaacaacttagtgattgacacacctagagta
cgaaaacagacccgtcacttcagcacactgaaagatgatgacctggtagagttttctgat
ctggaaagtgaagacgatgagcgaccacgctcccgaagacatgaccgtcatcatgcctat
gggcgcactgattgctttcgggtggaaaaacacctgctggtgtatggttggggacggtgg
cgagatattttgtctcatggacgctttaagcgacgcatgactgaacgagatgtggagaca
atttgccgagccatccttgtctactgtcttctgcactaccgtggagatgaaaatatcaaa
ggcttcatttgggacttgattagccctgctgagaatggcaagacaaaagaattgcagaat
cattcaggtctgtctatccctgtgccccgtggacgcaaaggaaaaaaagtaaaatcacaa
agcacatttgatatccataaagcagattggatacggaagtataaccctgacactttgttc
caagatgagagttacaaaaagcacttgaagcatcagtgtaacaaggtactgttgcgtgta
cgaatgttgtactacctgaggcaagaggttattggagaccaggcagagaaagtgttaggg
ggtgccattgccagtgagattgacatatggttcccagtagtggatcagctggaggttcca
acaacatggtgggacagtgaagctgacaaatccctcctcattggagtctttaaacatggc
tatgagaaatacaataccatgagggcagacccagccttatgctttctagaaaaggctggc
cggccagatgataaagcaattgcagcagaacatcgagtgttggataatttttctgacata
gtagaaggggttgactttgataaggattgtgaggatcctgaatataaacccctccagggt
ccaccgaaggatcaagatgatgagggtgatcccttgatgatgatggatgaggagatctca
gtgattgatggagatgaagcccaggtgacccaacagccaggccatctattctggcctcca
ggctctgccctcactgctaggctcaggcgcctggtaacagcctaccagcgcagctacaag
agagagcagatgaagatagaggctgccgaacgtggggatcggcgacggcggcgttgtgaa
gcagccttcaagcttaaagaaatagcacggcgtgagaagcagcaacgatggacaaggcgt
gaacaaactgatttctatcgagtagtatctacctttggtgtggaatatgaccctgacacc
atgcagttccattgggatcgcttccgcacttttgcccgactagacaaaaaaacagatgaa
agccttaccaagtacttccatggctttgtggccatgtgtcgtcaagtgtgccgcctgccc
ccagcagctggagatgaaccccccgaccctaatctgttcattgagcccatcactgaggag
agggcctcacggactctttaccgtattgagttgcttcgacgcttaagggaacaagtttta
tgtcaccctcttttggaagatcggctggcattgtgtcagcctccaggtcctgaattgccc
aaatggtgggagcctgttcggcatgatggggagctactacgaggggcagcccgccatggg
gtgagccaaacagactgcaacatcatgcaggacccagacttctcttttcttgctgcccga
atgaattacatgcagaaccatcaggcaggagcaccagctccatccctgtcacgctgctct
actccactgctccaccagcagtatacctcgcgcactgcctcaccattgtccctgcgccca
gatgctcctgttgaaaagtcaccagaggagacagctgcccaggtccccagtctggagagt
ctgactttaaagctagagcatgaggtggtggccaggagccaaccaaccccacaagactat
gaagtgcgcgtagccccctctgataccacccctctggttccccgaagtattccaccagtc
aaactggaagatgaggatgattcagactctgagctggacttgagcaagctgtcaccatca
tcctcttcttcctcatcctcatccagctccagctccagcactgatgagagtgaggacgag
aaggaagaaaagctaactgctgaccattcccgctcaaagctctatgatgaagagagtctc
ctgtcccttactatgtcccaagatggattcccaaatgaagatggagaacaaatgacccct
gagcttttgctgctgcaggaaagacaaagagcttctgagtggcccaaggatcgtgtcctg
ataaaccgtattgacctcgtctgccaggccgtactctcagggaagtggccttcgagccgc
aggaaccaggaagcaatagcaggaggcatgttggggccaggcaaccacttattagatagt
ccctcattgacccctggagaatacggtgattctccagtgcccacaccccgaagtagcagt
gcagcctccatggcagaggaggacacgtccgccgtcaccacagcagcagcccagttcacc
aagctccgccgaggcatggatgagaaggagtttaccgttcagatcaaagatgaggaagga
ttaaaattaacattccagaagcacaagttgatggctaatggagtcatcggagatggacat
ccgctgtttcacaagaagaaggggaatagaaagaagctaatggaactggaggtggaatgc
atggaagagcctaatcaccttgatgtggacctggagacccggatccctgtcatcaataag
gtggatggtactttgctggtgggtgaggatgcccctcgccgggctgaactggagatgtgg
ttacagggtcatccagagtttgctgttgatccccgatttctagcgtacatggaggatcgc
agaaaacagaaatggcagagatgtaaaaaaaataataaggctgacttgaactgtttggga
atggaaccagtccagacagctaactctaggaatggcaaaaagggtcaccatgctgaaact
gtgttcaaccgggttttgccagggccggttgccccagagagcagcaagaagcggacccgc
aggatgcgaccagacctttctaagatgatggccctgatgcagggaggaagcactgggtcc
ttacctctgcataacacgttccagcacggcagcagtggcctaccgtctgtgtcatctctg
ggtcacagcagtgccacttctgcatctttgccttttatgccatttgtgatgggcggtgca
gcatcatcccctcatgtagactccaacaccatgcttcatcaccaccaccaccacccccac
ccccaccatcaccaccatcaccatccaggcttgagagccactggctacccctcttcacca
gcgactaccacctctggtactgccttgcggttgccacccctgcagccggaggaggacgaa
gaggaggatgaggaagaggatgacgacttatctcagggctatgatagctcagaaagggac
ttctcactcattgatgatcctatgatgccagccaactcagactccagtgaagatgctgac
gactga
DBGET
integrated database retrieval system
