Ochotona princeps (American pika): 101533916
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Entry
101533916 CDS
T07609
Symbol
CARMIL1
Name
(RefSeq) F-actin-uncapping protein LRRC16A isoform X1
KO
K20493
leucine-rich repeat-containing protein 16
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
opi04131
]
101533916 (CARMIL1)
Membrane trafficking [BR:
opi04131
]
Others
Actin-binding proteins
Nucleation-promoting factors (NPFs)
101533916 (CARMIL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARMIL_C
Carm_PH
LRR_6
IL34
Muted
Spectrin_5
Cep57_CLD
Motif
Other DBs
NCBI-GeneID:
101533916
NCBI-ProteinID:
XP_004593141
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All DBs
Position
12:25514852..25850697
Genome browser
AA seq
1371 aa
AA seq
DB search
MSEESNDVPRELIESIKDVIGRKIKIAVKKKVKLEVKGDKVENRVLVLTSCRAFLLTARI
PTKLELTFSYLEIQGVICNKPAQMVVETEKCTISLKMASLEDGNDVLAHIGTCLRKIFPG
LSPVRIMKKVCMEPSERLASLQALWDSQTVAEQGPCGGFSQMYACVCDWLGFSYREEVQW
DVDTIYLTQDTRELNLQDFSHLDHRDLIPIIAALEYNQWFTKLSSKDLKLSADVCEQILR
VVSRSNRLEELVLENAGLRTDFAQKLASALAHNPNSGLHTINLAGNALEDRGVSSLSVQF
AKLPKGLKHLNLSKTSLSPKGVNSLCQSLSANPLTASTLTHLDLSGNILRGDDLSHMYNF
LAQPNAIAHLDLSNTECSLDMVCGALLRGCLQYLAVLNLSRVVFSHRKGKEVPPSFKQFF
SSSLALVHINLSGTKLSPEPLKALLLGLACNHSLKGVSLDLSSCELRSGGAQVLEGCIAE
IHNITSLDISDNGLESDLSTLIVWLSKNRSIQHLALGKNFNNMKSKNLTPVLDNLVQMIQ
DEESPLQSLSLADSKLKTEASIIINALGSNTSLTKVDISGNAMGDMGAKMLAKALQINTK
LRTVIWDKNNITAQGFQDIAVAMEKNYTLRFMPIPMYDASQALKANPEKTEEALQKIENY
LLRNHETRKYLQEQAYRLQQGIVTSTTQQMIDRICVKVQDHLNSLRNCGGEAIQEDLKSA
ERLMRDAKNSKTLLPNLYHVGGASWAGASGMSSSTIQETLESMAGEVTRVVDEQLKAALE
SMVDAAENLCPNVMKKAHIRQDLIRASTEKISIPRTFVKNVLLEQSGIDILNKISEVKLT
VASFLSDRIVDEILDALSRCHHKLADHFSRRGQTLAQQDSFEMEVAEEKPVKRSTLTVED
LTEVERLEDLDTCMMTPKSKRKSIHSRMLRPVSRAFEMEFDLDKALEEVPIHIEDPPFPC
VRPEKRSSAFISELPSEEGRKLEHFTKLRPKRNKKQQPTQAAVCAASVVPQDGEQNGLMG
RVDEGVDEFFTKKVTKMDSKKWSSRGSESHELGEGDEKKKRDSRKSGFLNLIKSRSKPER
PPTMLMAEEPSSPKGAGRSAAVDITRKDVRAAEHNGTPERTEEIKTPDSLEEGQGEETAR
AERSDSRSSPQGGRRYGVQVMGSGLLAEMKAKQERRAASAKKLGNDAFSQEPSSPAFSST
ERLDGAGAAPKLHPGLPENRFGSGTPERNPRAEPRAEMGPRSRSLSGTPTSPKPLLQSPK
PSLAARPTIPQKPRSSSRPEDIPDSPSGPSSPKVALLPPVLKKVPSDKERDGQSSPQPSP
RTFSQEVSRRSWGQQPQEHQEQKQRPSSRDGRHGSKSSDSGEEAEKEFIFV
NT seq
4116 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggagagcaacgacgtccccagggagctgatagaaagcataaaggatgttatt
ggaagaaagataaaaattgcagtcaagaagaaagtaaagttggaagttaaaggagacaaa
gttgaaaaccgagtgctggtgctcacatcatgccgggccttcctgctgactgcacgtatc
cctaccaagctcgagttaaccttcagctacttggagatccaaggtgttatttgcaacaag
cctgctcagatggttgtggaaacggagaagtgcaccatctccctgaagatggcatcgctg
gaggacgggaatgacgtgctggcgcacatcggcacctgcttgcgaaagatatttcctggc
ctttctccagtgaggatcatgaagaaggtctgcatggagccgtctgagcgcctggccagt
ctccaggccctgtgggacagccagaccgtggctgagcagggcccctgcggtggattttct
caaatgtacgcctgtgtctgtgactggctggggttttcatacagggaagaagtgcagtgg
gatgtggataccatttatctgacgcaagacaccagggagttgaacttacaagacttcagt
catctggaccacagagacctcatccccatcattgctgctttggagtacaaccagtggttc
accaagctgtcctccaaggatctgaaactctctgcggatgtctgcgaacagatccttagg
gtggtgagtagatccaatcgactggaagaattggtgttggaaaatgctggacttagaaca
gattttgcacaaaaactggccagtgcgctcgctcataatcccaactcaggactccacacg
attaaccttgctggcaacgcactggaggatagaggtgtgtcctctttaagtgttcaattt
gccaaactccccaagggattaaaacatttaaatttgtccaaaacctcattatcacctaaa
ggggtgaatagcctttgtcagtcactcagtgccaatcctctgaccgcctccaccctcacc
catctagacctctcagggaacatccttcgcggagacgacctctcgcacatgtataatttt
ttggctcagccaaatgccatcgctcatctggatttatccaacacagaatgttccctggac
atggtctgtggagctcttctccgtggatgccttcaatatttagctgttctcaatctctcc
agagtcgtcttctctcaccggaaaggaaaagaagtacccccatctttcaagcagtttttt
agcagttctctggctttggtgcacatcaacctttcaggcacaaaactgtctcctgagccc
ttaaaagcgttgctgttgggcctggcttgtaatcatagtctgaagggggtttctcttgac
ctcagcagctgtgagctgaggtcaggaggcgctcaagtcttagaagggtgtattgctgaa
atccacaacatcaccagcttagacatctctgacaacggtctggaatctgacctctctacc
ttaatagtgtggctcagtaaaaacagatctatccaacatctggccttaggcaaaaatttt
aacaatatgaaatccaaaaatctgacacctgtattggacaacttagtacagatgattcaa
gatgaagaatcccctctgcagtccttgtccctggctgactcgaaactcaagactgaggcc
agcatcatcatcaatgccctgggaagcaacacctcgctgaccaaagtggacatcagtggg
aatgcaatgggagacatgggagcgaagatgctagcgaaagccctgcagatcaataccaag
ctcaggactgtaatctgggacaagaacaacatcactgcacaaggcttccaagatatagct
gttgctatggaaaagaactacacactgcgatttatgcccattcccatgtacgatgcttcc
caggccctaaaagcaaaccctgagaaaacagaagaagctctgcaaaagatagaaaactat
ttgctacggaatcacgagaccagaaaataccttcaggagcaggcctaccgcctacagcag
ggtattgtcaccagcaccacccagcagatgattgacaggatatgtgtgaaagttcaagat
cacctcaactccttacggaactgtgggggagaagccatccaggaagacttgaaatctgca
gaacggctcatgcgtgatgctaagaactccaagacgctgttaccaaacttataccatgtt
ggcggtgcgtcctgggcaggagccagtggcatgtcgtccagtacaatccaggagaccctg
gaatccatggctggagaggtcacgagagttgtggatgaacaactaaaggctgcgcttgaa
tccatggtggacgctgccgagaacctttgtcccaatgtgatgaaaaaggcccacatacga
caagacctgattcgtgccagcactgaaaagatctccattccacgtacctttgttaaaaat
gtcctgttggagcaatctggaattgatatccttaacaaaattagtgaggtgaagctgact
gtggcctccttcctgtctgatcgaattgtggacgaaatcctggacgcactctcacgttgt
catcataaactggctgaccatttcagcaggcgtggccagaccctcgcccagcaagactcc
tttgagatggaggtggctgaggagaagccagtgaagcgctccaccctcacagtggaggac
ctgactgaggtggagcgcctggaagatctggatacctgcatgatgactcctaaatccaaa
aggaagagtatccacagccgaatgctgcgacccgtatccagggccttcgaaatggagttt
gatctggataaagccctggaagaggtgcccatccacatcgaagacccgcctttcccatgc
gttaggccagagaagcgcagctcggctttcatctctgagctgccctcggaggagggcagg
aagctggagcattttaccaagttaaggcccaagcggaataagaagcagcagcccacccaa
gctgcggtctgtgctgccagtgtggtcccccaggatggtgaacagaacggtcttatgggg
agagtcgatgaaggtgtagatgagtttttcaccaagaaggtgaccaaaatggattccaag
aaatggtcgagcagaggatctgagtcccatgagcttggtgaaggcgatgaaaagaagaag
cgagattctcgaaaaagtggctttctcaacttaatcaaatcccggtccaaacccgaaagg
cctcctaccatgctaatggcggaagagccctcctcccccaagggggcaggtcgaagtgcg
gccgtggacatcacacggaaggacgtcagggcggcggagcacaacggcactccagagcgg
acggaagagatcaagaccccggattccctggaagaaggtcaaggggaagaaacagcaagg
gcggagcgcagcgacagcaggagcagcccgcagggcgggcggaggtacggcgtgcaggtg
atgggcagcgggctgctggccgagatgaaagccaagcaggagaggagagccgcctcggcg
aagaaacttggaaacgacgccttctcccaggagccttccagtccagccttcagcagcaca
gagcggttggatggagccggagccgcgcctaaactgcacccaggtcttccagaaaaccgc
ttcggttcgggaacaccggaaaggaacccgcgagccgagcccagggcagagatgggcccg
aggtctcgcagcctgtcaggcacaccgacgagccctaagcccctcctgcaatcgcccaag
cccagcctggccgcacggcccaccatcccgcagaaacccaggagctcctctcggcctgag
gacattccagactctccatctggccccagctcccctaaagttgctcttcttccacctgtc
ttgaaaaaagttccttcagacaaggagagagatggccagagtagcccccagcccagtccc
aggacattttcccaggaagtgtcaaggagaagctggggccagcagccccaggaacatcaa
gagcaaaagcagcggccctccagccgagatggccgtcatggcagcaagtccagtgactcc
ggagaagaagcagaaaaagagttcatttttgtgtaa
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