Ochotona princeps (American pika): 101534955
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Entry
101534955 CDS
T07609
Symbol
CPSF2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2 isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101534955 (CPSF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101534955 (CPSF2)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
101534955 (CPSF2)
U7-dependent histone pre-mRNA processing factors
101534955 (CPSF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
101534955
NCBI-ProteinID:
XP_004584390
LinkDB
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Position
20:complement(7128415..7149564)
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AA seq
782 aa
AA seq
DB search
MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYLEKEKIKKEAAKKLEQSKEADIDSS
DESDVEEDVDQPSAHKMKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGDEPMDQDLSDVPTKCISTTESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASLDLAECCRAFGGKDIKVYMPKLHETVDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDA
EMQVDAPSDSSVIAQQKAMKSLFGDDEKEAGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcaataatcaaattaactaccctctctggggtccaagaagagtcggctctttgc
tatcttctccaagttgatgaatttaggtttttgctggactgtggctgggatgaacacttt
tcaatggatattatagattccctgaggaagcacgtgcaccagatcgacgccgtgctgctg
tcacaccccgacccgctgcacctcggcgccctcccctacgccgtgggcaagctggggctc
aactgcgccatctacgccaccattcctgtgtacaagatggggcagatgttcatgtatgac
ctctaccagtctcggcataatacagaagattttacactttttacgttggatgatgtggat
gcagccttcgacaaaatacagcagctgaaattctctcagattgtgaatctgaaagggaaa
ggacacggcttgtccatcacacctctgccagccggtcatatgatcggtgggacaatatgg
aaaatagtcaaagatggggaagaagagattgtgtatgctgtcgacttcaaccacaagagg
gagatccatttaaacggatgctccctggaaatgctcagcaggccctccctactcatcact
gattcgtttaatgcgacgtacgtgcagccgagaagaaaacagcgagatgagcagcttctg
acaaatgtcttggagacacttcgaggcgacgggaatgtattaatagcagtagatactgcg
ggccgagttctagaacttgctcaacttctcgatcagatttggagaactaaagatgcaggg
ttgggtgtctactcactggcactcctaaataatgtcagctataatgtggtggagttctcc
aagtcccaggtcgaatggatgagtgataaattgatgagatgttttgaagacaaaagaaat
aatccatttcaatttcgccatctttctttgtgccatggtctttctgacttggctcgagtt
cctagccccaaagtggtgcttgccagtcagcctgacctggagtgtggcttctcaagggat
ctcttcattcagtggtgccaggaccctaagaactccatcattctaacctacagaactact
cctgggactttagcacgtttcctaattgataatccctctgagaaaattacagaaatagag
ctgaggaaacgtgtgaagctagaagggaaagaacttgaagaatacttggaaaaagagaaa
ataaagaaagaagctgctaaaaaacttgagcagtcaaaagaggctgacatagattccagt
gatgagagtgacgtggaggaagacgtggaccagccgtccgctcacaagatgaaacatgac
ctgatgatgaaaggcgaggggagtcgcaaaggcagcttcttcaaacaggcgaagaagtcc
taccccatgtttcctgctccggaggaaagaatcaagtgggatgaatacggcgagattatc
aaaccagaggatttcttagtgccagaacttcaagctacagaagaagaaaaaagcaaatta
gaatctggtttgacaaacggagatgaacccatggatcaagatttatctgatgttcctact
aagtgtatttcaacaacagagtctattgaaataaaagccagagtcacttacatagactac
gaaggacgatccgatggagattccatcaaaaaaatcatcaatcagatgaaaccacgacag
ctgatcatcgtccacgggcccccggaggccagtctagacctggcggagtgctgccgcgcc
ttcggggggaaggacatcaaagtgtacatgccaaagctccacgagacagtggacgccacc
agcgagacacacatctaccaggtgcggttaaaagactcccttgtcagctcccttcagttc
tgtaaggcgaaagatgccgaattggcttggatcgatggcgtgttggacatgagagtttcc
aaggtggacacgggcgttattttagaagaaggggaactgaaggatgatggggaggatgcg
gaaatgcaagtggacgctccctccgattccagcgtgatcgcgcagcagaaggccatgaaa
agtctgtttggggatgatgagaaggaggcgggggaagaaagtgagatcattcccaccttg
gaacccttgccacctcacgaggttccaggacatcagtcagtttttatgaatgaacccaga
ctgtcagacttcaagcaagttcttctacgggagggaattcaagctgagtttgtaggcggt
gtacttgtttgcaacaaccaagtagcagttcgaagaacggaaactggacgcatcggatta
gaaggctgcctttgtcaagacttttataggataagagaccttttgtatgaacagtatgcc
atcgtgtaa
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integrated database retrieval system
