Ochotona princeps (American pika): 101535897
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Entry
101535897 CDS
T07609
Symbol
RPAP1
Name
(RefSeq) RNA polymerase II-associated protein 1
KO
K20826
RNA polymerase II-associated protein 1
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opi03021
]
101535897 (RPAP1)
Transcription machinery [BR:
opi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
101535897 (RPAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP1_C
RPAP1_N
Motif
Other DBs
NCBI-GeneID:
101535897
NCBI-ProteinID:
XP_004578214
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All DBs
Position
17:complement(55120535..55133984)
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AA seq
1393 aa
AA seq
DB search
MLSRPKLGESEVDLLRFQSQFLASGVTPAAKLVKRVNRRGGDASAAQPPPQDHRDVVTLD
NLPDLPPALVPAPPKRARPDPSHCLPVDEDPEERLSRHDQHITAVLTKIIERDTSSMAVT
LPVPSGVAFPPVFHRSRERQEKPAMCGRKSIFAQEIAARRTSEAEVSPAREATTHLDPPQ
GAVACEAPTPRDQGCQLTGHSPGSEGPLLAMEKKLRKQEAEQESRIIHEENMAIMQAMSH
EEIMQAQQELLAQLDPNLVAFVRSRGCAHEQAAKNVTKVQGSGGPSADVAKEEAVVTSSA
SEPKREDELEPGAPALALPVTPHKEWLHMDTVELEKLHWTQDLPPLRQQRTQQRMQARFS
LQGELLAADADLPTHLGLHHHGEEPERAGYSLQELFHLTRSQVSQQRSLALQVLSQVLGR
AQAGEFGDQLVGSVLRLLLDAGFLFLLRFSLDDRVDGVIAGAVRALRVLLVAPGDEELLD
RTFSWYHGALVFPLMPSQEDEDDEDEDEEPPGEKAKGKNPEKERRAPPDLARHDVIKGLL
ATNLLPRLRYILEVSCPGPMVVLDILAVLIRLARHSLEAATRVLECPRLIETIVREFLPI
SWSPVGMGPTPSLHGVPCAMAMKLLRVLASAGRNIAARLLNGFDLRSRLRRFIAEAPQDL
TLPPEEAEALSTEAFRLWAVAASYGQGGDLYRELYPVLVRALQTVPTELAADCPPPLPMQ
RIASLLSLLTQLTLTAAGTHPESLSEPAEAGLSAPLYSVTWTQVSGLQLLVDPCLRQSLN
LLPRPEKWNALGPVPTACLLFLSAYYQAWSQQPGLCPEDWLEDAERLSRELLLPLLDQST
LGGLWDSLGSCSPLCNPLSCAPAPEALPSLVSLGCTGGCPQLSLAGSASPFPFLTALLVL
FNTLARIHKGLCGQLGAVLAAPGLQSYLVQCMAPRAAPLLTPFSAWALRHEYHLQYLALA
LAQKASICQPMPATSAALHHATALALLSRLLPGSEHLAHELLLSFVFRLEFLPESTSGGP
EAADFSDQLSLVNTGDPRSRRGALLAQACQDLPSIRSCYLTHCSPARASLLASQALYRGE
LQQVPSLLLPVPKEPLLPTDWPFLPLIHLYHRASACASGLPPPDAEATALRGLQWVLLLE
SWRPQALYAVPPGARLARLMCVFLADSELFRETPVQHLVAALLVRLCHPQVLPSLKLDCP
LPGLTSFPDLYASFLEHFEAVSFGDHLFGALVLLPLQRRFSVTLRLALFGEHLGALRALS
LPLTQLPVPLECYTGPPEDNLDLLQLYFRALVTGALRPHWCPVLYAVAVAHINSFIFCQD
PKSSDEVKAARRSMLQKTWLLANEGLRQHLLHYKLPDCSLPEGFELYSQLPPLRQQYLQR
LASGVLPSGVSET
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcaagacccaagctgggggagtccgaggtggacttactgcgcttccagagtcag
tttcttgcttctggtgtgactccggctgcaaaactggtgaagagagtgaacaggagaggt
ggcgatgccagcgccgcccagcccccgccacaggaccatcgggacgtggtgacactggac
aatctcccagatttgcctccagctttggttcctgctcctcccaagagagccaggcccgac
cccagccactgcctgcctgtggatgaggaccctgaagagaggttgagcagacacgatcag
cacatcactgcagtcctgaccaagatcattgaaagagatacaagttcaatggctgtgacg
ctgcctgtgcccagtggtgttgccttcccccctgtgttccatcgctcacgggagagacag
gagaagccagcaatgtgtggtaggaaaagcatctttgcccaggagattgcagcaagacgc
acgtctgaagctgaggtatccccagccagggaagccacaacccacctggacccaccacag
ggtgctgtggcctgtgaggcacccactcccagggaccagggctgtcagcttacaggccac
agcccaggctctgagggaccgctcctggccatggagaagaaactcagaaagcaagaggct
gagcaggaatcccggatcatccacgaagagaacatggcaataatgcaggccatgtcccac
gaggagatcatgcaggcacaacaggagctgctggctcagctcgaccccaacctcgttgcc
tttgtgaggtctcgcggctgtgcacatgagcaggcagccaagaacgtcaccaaggtgcag
gggtcaggaggaccctcagcagacgtcgccaaagaggaggctgtcgtgacatcttccgcc
agtgagcccaagagggaagacgaactggagccaggagccccagctctggccctgcccgtg
accccccacaaagagtggctgcacatggacactgtagaactggaaaaactccactggacc
caggacctgcccccgctgcggcagcagaggacgcagcagaggatgcaggctcgattcagt
ctccagggtgagctgctggctgcagatgcagatctgcctacccatctaggtctgcaccat
catggagaggagcctgagagagcagggtactccctccaggagctgttccacctgacccgc
agccaagtgtcccagcagagatcactggcactacaggtgttgtcccaggtcctcggcagg
gcccaggccggtgagtttggggaccagctcgtgggcagcgtcttacgtctcctgttggat
gctggtttcctcttcctactgcgcttctccctggatgaccgagtggatggggtcattgca
ggcgctgtccgggccctccgggtccttctggtggctcctggagacgaggagctcctggac
agaaccttctcttggtaccatggagcactggtgttccctctgatgcccagccaggaggac
gaggacgatgaggatgaagatgaagagccaccaggagaaaaggcaaagggcaagaaccca
gagaaggaaagacgagccccacctgacctggcccgacatgatgtcatcaaggggctcctg
gccaccaacctgctaccacggctgcgctacatcctggaggtatcctgtccaggacccatg
gtagtcctcgacatcctggccgtgctcatccgcctggcccgccattccctggaagcagcc
acaagggtcctagagtgccctcggctgatagagaccatagttcgagaattcctgcccatc
agctggtctcctgtgggaatggggcctacccctagtctacacggagtgccctgtgccatg
gccatgaaactgcttagagtcctggcctcagctgggaggaacatcgcggcccggctgttg
aatggctttgacctccggagccgcctacgccgcttcatcgctgaggcaccccaggatctg
accttacctccagaggaagccgaggcactgagcactgaggccttccgcctgtgggctgtg
gctgcctcctacggccagggcggggacctttatagggagctctacccagtgctggtgcgg
gccttgcagactgtgcccactgagctagctgccgactgcccaccacccctccccatgcag
cgcatagcctccctgctcagcctgctcacccagctgaccctgacagctgccggcacccac
ccagagtccctcagtgagcctgctgaggctggcctgtcagcgcccttgtactcggtcact
tggacacaggtgtctgggctgcagcttcttgtggatccctgtctgaggcagtccttgaac
ttgctgcccagacctgagaagtggaatgctctgggcccagtgccaaccgcctgcctgcta
ttcctgagcgcctactaccaggcctggagccagcaaccaggcttgtgcccagaggactgg
cttgaagacgcagagcgcttgtcacgggagctactgctgccactgctggaccagtccacc
ctgggtggcctttgggattcacttgggtcctgctcccctctctgcaacccactgtcctgc
gctccagcccctgaagccctccccagccttgtgtcgctgggctgcacaggaggctgcccc
cagctcagcttagctggctcagcctcgcccttcccattccttactgccctccttgtcctc
ttcaatacccttgcgcggatccacaaggggctatgtggccagctgggtgctgtattggct
gccccaggactccagagttatttggtgcagtgcatggcccctcgggccgccccactcctc
acacccttctctgcgtgggctctgcgccatgagtaccatctgcagtacctggccctcgcc
ctggctcagaaagcgtctatatgccagcccatgccggccaccagtgctgccctgcatcat
gccacggccttggccctgctgagccggctgctgcccggaagtgagcacctcgcccacgag
ctgttgctgagcttcgtgttccgcctggagtttctcccagaaagtacgtcaggaggcccg
gaggctgctgacttctctgaccagctctccttagtgaacactggggacccccggagccgg
cgaggggctctgctggcccaggcctgccaggacctccccagtatccgcagctgctacctg
acccactgctcaccagcccgagccagcctgctggcttcccaggccttgtaccgaggggag
ctgcagcaggtccccagcctgctgctgcctgtgcctaaggagccactcctgcccaccgac
tggcccttcctgccgctgattcatctctaccaccgagcttctgcctgtgcctcagggctc
ccgccacctgacgcggaggccacagccctgcgcggcctgcagtgggtgctgcttctagag
agctggcggccccaggcgctctacgctgtgcctccaggagcccgcctggctcgactcatg
tgtgtgttcctggcagacagcgagctgttccgggagaccccagtgcagcatctggtggct
gccctcctggtccgcctctgtcaccctcaggtcttgccaagcctcaagctggactgccca
cttcctggcctgacgtctttccctgacctctatgccagcttcctggaacatttcgaggct
gtctcttttggggaccacctctttggggccctggtcctccttcccctgcagcgtcggttc
agcgtcaccttgcgccttgccctctttggggagcatctgggagccttgcgagctctgagc
ctgcctctgacccagttgcccgtgcccttggagtgctacacgggacctcccgaagacaac
ctggacctccttcagctctacttccgggccctggttacaggtgcactgcgtcctcattgg
tgccccgtgctctatgctgtggctgtggctcacatcaatagcttcatcttctgccaggac
ccaaagagctcggacgaggtaaaggctgcccgcaggagtatgctgcagaaaacatggctg
ctggcaaatgagggtctccggcaacacctcctccactataagcttcctgactgcagcctc
ccagaaggcttcgagctgtattcccagttgcccccgttgcgtcagcaatacctgcagaga
ctggcctcaggggtgctccccagtggggtgtctgagacctag
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