Ochotona princeps (American pika): 101536406
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Entry
101536406 CDS
T07609
Symbol
DCAF1
Name
(RefSeq) DDB1- and CUL4-associated factor 1 isoform X1
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi05170
Human immunodeficiency virus 1 infection
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09160 Human Diseases
09172 Infectious disease: viral
05170 Human immunodeficiency virus 1 infection
101536406 (DCAF1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
opi01001
]
101536406 (DCAF1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101536406 (DCAF1)
Enzymes [BR:
opi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
101536406 (DCAF1)
Protein kinases [BR:
opi01001
]
Serine/threonine kinases: Other
Other
101536406 (DCAF1)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
101536406 (DCAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
EIF3I
WDR55
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
101536406
NCBI-ProteinID:
XP_036353319
LinkDB
All DBs
Position
9A:complement(18981619..19043954)
Genome browser
AA seq
1508 aa
AA seq
DB search
MTTVAVHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSELIEKETEEYRKGDPDPFDDR
HPGRADPECMLGHLLRILFKNDDFMNALVNAYVMTSREPPLNTAACRLLLDIMPGLETAV
VFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQDIAANYRDENSQLVAIVLRRLR
ELQLQEVALRQENKRPSPRKLSSEPLLPLDEEAVDMDYGDIAGDVVDGEQEEASGDVEIS
FHLDSSHKTSSRVNSATKPEEGVLKKNKSAKQGDRENFRKAKQKLGFSSSDPDRIFVELS
NSSWSEMSPWVIGTNYTLYPMTPAIEQRLILQYLTPLGEYQELLPIFMQLGSRELMMFYI
DLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYL
SYNQDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRY
DGLRRLVNLISTLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVK
QSLQRTEGGILVHPQPPYKACSYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLL
LQLISIACNWKTYYARNDTVRFALDVLAILTVVPKIQLQLAESVDVLDEAGSTVSTVGIS
IILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGKFISGTPRRKLPQTPKSSEH
TLAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTVRQIISKLPL
FSSCQIQQLMKEPVLQDKRSDHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQ
SRISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTAASHSSAFTPVTAAAASPVSL
PRTPRIANGIATRLGSHAVVGASAPSAPTVHPQPRPPQGSLALPGPSYAGNSPLIGRISF
IRERPSPCNGRKIRVLRQKSDHGAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARC
KNPVATCPPFSLFTPHQCPEPKQRRQAPINFTSRLNRRASFPKYGGVDGGCFDRHLIFSR
FRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYNVFSGQEEASYNCHNSAIT
HLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDRVIGTKGDI
AHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFN
MNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDED
DLMEERMKSPFGSSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALN
MDTVCRLYEVGRQRLAEDEDEEEDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEE
DDNNENAGEDGDNDFSPSDEELANLLEEGEDGEDEDSDADEEVELILGDTDSSDNSDLED
DIILSLNE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atgactacagtagcggtacatgtggactccaaagctgagctcactaccctgctggagcag
tgggaaaaggaacatggcagtggccaggacatggtccctatccttaccaggatgtctgaa
ttgatagaaaaagaaactgaagaatatcgtaaaggagatccagacccatttgatgatcga
catcctggtcgagctgatccagaatgtatgctgggccacttgctgagaatactcttcaag
aatgatgatttcatgaatgcactggtgaatgcatatgtgatgacaagccgagaaccccct
ttgaacactgcggcttgcagactcctgctggacatcatgccagggttagaaactgctgtt
gtctttcaagaaaaggaaggtattgttgagaatcttttcaaatgggcccgagaggctgat
cagccattgaggacttattctactggactgttaggaggtgctatggaaaatcaagacatt
gctgccaactacagagatgaaaattcacaattggtggctatagtgcttcgaagactgagg
gagctacagcttcaggaagtagccttgcggcaagaaaacaaacgtcccagcccacggaag
ctctcttctgaaccccttttgcctttggatgaggaagctgtggatatggattatggcgac
atagcaggagatgtagtggatggagagcaagaagaagcttctggagatgtggagatctct
tttcatcttgattcaagccacaagaccagtagtagagtaaactcggcgaccaaaccggag
gaaggagtcttgaagaaaaacaagtcagcaaaacagggtgacagagagaactttaggaaa
gccaagcagaagttggggttctcgtcttctgatccagatcgcatatttgttgagctttct
aacagcagctggtcagaaatgtccccgtgggtgattggcaccaattataccctttatcct
atgactcctgctattgagcagagactcattcttcaatatttaactcctctaggagaatat
caggagctacttcccatattcatgcagcttggatcacgagagttgatgatgttctatatt
gatctgaagcagactaatgatgtcttgcttacgttcgaggccctcaagcacttagcttct
ctcctgctgcataacaaatttgccacagaatttgttgctcatggtggagtacagaaattg
ctggaaattcctcgtccttcaatggctgcaactggtgtatctatgtgcttgtattacttg
tcttacaaccaagatgccatggaaagagtttgcatgcatccacacaacgttctgtctgat
gtggtgaactatactctgtggttaatggaatgttctcatgcctcaggatgctgccatgct
accatgtttttctcaatttgtttctcatttcgggctgtcttggagctctttgaccgctac
gatggtcttcgtcgtctggtgaatttgattagtactttggagattctaaatttggaagat
caaggtgcccttctgagtgatgatgaaatatttgctagccggcaaactgggaaacatact
tgcatggccttgcgcaagtactttgaagctcacctggccattaaattggaacaagtaaag
cagtcgcttcagaggaccgagggtggcattcttgttcatcctcaacccccatacaaggca
tgttcatatacccatgaacagattgtggagatgatggagtttttgatagagtatggccca
gcacagctgtactgggaaccagctgaagtcttcctcaagctgtcttgtgtgcaactctta
ttgcagctcatttcaattgcctgcaactggaagacatattatgcaaggaatgatactgtg
cgctttgccttggatgtcctggctattctcaccgtggtgccaaaaatccagctgcagctg
gcagaatctgtggatgtgctagatgaggctggctctactgtctccactgtgggtatcagc
attattttgggagtggctgagggtgagttctttatccatgatgctgaaattcagaagtca
gcacttcaaattatcatcaattgtgtgtgtggcccagataaccgcatatccagtattggc
aaatttatctctggaactcctcggaggaagctgcctcagacccccaaaagcagtgagcac
accctggcgaagatgtggaatgtggtccagtccaacaatggcatcaaggttctcctgtcc
ttactctctattaagatgcccatcactgatgcagaccagatccgtgccctggcctgcaag
gctctggtgggcctctctcgcagcagtactgtccggcagatcatcagcaaactgcccctt
ttcagcagctgccagatccagcagctgatgaaggagcctgtgctgcaggacaagcgcagt
gaccatgtcaagttctgcaagtatgccgctgagctcattgaacgggtgtcaggaaagcca
cttctcattggcacagatgtgtctctagcacgcctgcagaaagcggatgttgtcgcacaa
tcaaggatctcctttcctgagaaagagttacttctgttgataagaaaccatctcatttct
aaagggctaggagaaacagcaacggtgctgacaaaggaggccgacttgcccatgactgct
gcctcccattcttctgcctttaccccagtaactgctgctgctgcttcacctgtctctctt
ccccgaacccctcgaattgctaatggcattgcgactcgactaggcagccatgctgtcgtg
ggtgcctctgccccctctgcccccactgtccatcctcaaccacggccgcctcagggttca
ctagctttgcctggaccatcttatgcaggcaattcccctttgattggtaggatcagtttt
atcagagagaggccgtcaccttgcaatggcaggaaaatcagagtgttgcggcaaaagtcg
gaccatggcgcctacagccaaagcccagccataaaaaaacagttggacagacatcttcct
tccccacctacactggacagtatcatcacagaatatcttagggagcaacatgctcgctgc
aagaacccagtagccacctgcccacctttctctctctttactcctcaccagtgtcctgag
ccaaaacagaggcggcaagcgccaataaattttacctcaaggctaaaccgtagggcatca
tttccaaagtatggaggggtagatggtggatgctttgatagacaccttatctttagcaga
ttccgtcctatttcagtgttccgggaagccaatgaagatgagagtggcttcacctgctgt
gcgttctcagcacgggagcgattcctaatgcttggcacttgcacagggcagctgaagctg
tataatgtattcagtggacaggaggaggccagttacaactgtcacaactcggccatcaca
caccttgaaccttccagggacgggtccttgctgctgacatctgctacttggagccagcct
ttgtctgcactttggggaatgaaatcagtgtttgatatgaagcattccttcacagaagac
cactatgttgaattcagtaagcattctcaggatcgggtcataggcacgaagggggacatt
gcccatatttatgatattcagactggcaacaagctgttgactctgtttaacccagatctt
gctaacaactacaagaggaactgtgccacctttaatcctacagatgatcttgtcttaaat
gatggcgtcctctgggatgtccgctccgcacaggccatccacaagttcgataaattcaac
atgaacatcagtggcgttttccatccgaatgggctggaagtcatcattaatactgagatt
tgggaccttcgaactttccatcttttacacactgttcctgctttggatcagtgtcgtgtg
gtgttcaaccatacagggacagtgatgtatggagctatgttgcaggcagacgatgaagat
gacttaatggaagaaaggatgaagagcccctttgggtcatcattcagaacatttaatgca
actgactacaaacctatagcgaccattgatgtgaaacgaaacatctttgatttgtgtaca
gacaccaaggattgctatcttgccgtcattgagaatcaaggcagcatggatgccctgaac
atggacaccgtgtgcaggctgtatgaagttggcaggcaacggctggctgaggatgaagat
gaagaagaggaccaggaggaggaagaacaggaggaagaagatgatgatgaagatgatgac
gacactgatgatctggatgagcttgacacagatcagctgctggaggcagagctggaggaa
gatgacaacaacgagaatgcaggcgaggatggagacaatgacttctctccctctgatgag
gagctggcaaacctcctggaggagggagaagatggcgaggatgaagactcggatgcagac
gaagaagtggaactgatcctgggggacactgacagctctgacaactctgatctggaagat
gacatcatcttatctctgaacgagtga
DBGET
integrated database retrieval system
