Ochotona princeps (American pika): 105941704
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Entry
105941704 CDS
T07609
Symbol
CFAP54
Name
(RefSeq) LOW QUALITY PROTEIN: cilia- and flagella-associated protein 54
KO
K25553
cilia- and flagella-associated protein 54
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
opi03037
]
105941704 (CFAP54)
Cilium and associated proteins [BR:
opi03037
]
Motile cilia and associated proteins
Sperm associated proteins
105941704 (CFAP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFAP54_N
fn3
Motif
Other DBs
NCBI-GeneID:
105941704
NCBI-ProteinID:
XP_036348381
LinkDB
All DBs
Position
4:48826965..49197410
Genome browser
AA seq
3150 aa
AA seq
DB search
MFGCCDTVARQPRVHTLRTGWGRGSMSVPGLYSSSVCYEEPLPCISLAELPPPPPSATSV
STSPLESKTSTPRPLLRGASPKDSLPPASFYGPLDAKNPLLASFEREIQEFLGFMKKKKA
LAATEELKHEFQRRGATSLFNIWTKYAPRLPTDYYNEKLLKVGDSLFLMKEYKLALLQCY
GRYLQQFSMDFDENKADVNEFKASFFPKGFGDAAAGLTFHALNGKNICSYQLVCDSDVKL
QNKESVSQCLQILSSLRLVMQVALPQEHLCWIVFNGTIYIYTICRKLMVIGQSSKALEYL
LWASVCMESSVPLLSIRYLTWRTTLYTAVCQCYYDCQAGIHGEAFARRALGKIDELRQLE
VMSSSKSKEESKRYYREAAIKMAVMIFKRGIFESRRKNKILFRPKTRINLKEAQTLPWPR
TVTERLLDEMFDSTSIRFLAVLEALSDSNRRILQAGPVVTDEVELRDVVSELFMAGKELL
IISNMGANGIFDFPKIPLMELMIERKNIISLDAAVKFIKLAFTYEEWSLFESAAWQLLCF
LQGQDDPESKRAEKDLTLLMAIEPLVNAKRNKGLILPLENYKEGQTSQICLKRISFQDNL
GKPSGYSEDIFHLASTLHSCVCSSPQDVMPDKEIIVDMIMFLWQKCKLGIQRFSMSGSDY
AKFTVKISTNKWIYLLWQLNEVIQSCRMEDIDIVVVAEVTLRLSEILESLGNPERKFKTS
LDTLSRKATEESLGTPKGIPEILPILKKKPVEQLFFAYELLDKAIDGINLNCMLTTLPNG
SSVVDHCYAKSTHDATGDTHKPITANSFMMDLHLELIQAQHRIAVVLLNQWQVLQTPTVS
KCVPTKSQEKLKQSGSIDCFTESSIMNKIKKNKISKAIYLMQKALLIFEKDSTSTSSWDF
LMEAYSLIEKIEAEQNALYSHQTCLKSSKRKKSKVPPPPILLSRTHCSVTLKPAPFVSEV
KVSWYCILGRKAEGSYGKVRLNNNHLPNSGEAIPADGRSIFEVKGLETNEKYIFAVAAYS
SNGKLVGDAVGETTKPILVYPPLSAVTARMFLTQVAYQVGNYDLAKRVFSPVWNSFVASP
LQDEQSVVCLSNIMTITQRRLHPDVLAETSSILLYLFLRNIFVTSDIKIKEENLFCDNIK
GNEIFPSQQIARLIECERILVALELSSFLNDSSYTFQAVTQCYGLLAPIIYHNIVLVPVV
QILIKCIVFLQGLPNIGHSKKHILSFESVQHMIACCIFYITKILRSWREYDLAVMIINYG
KKMLDVTSECKSLFGNAEQDEIPEETSSKKSLKTKRPQQILLPEKINEQLALLETHLLKL
TKQFVAPELSGAEDPIFLYPVVLNWSVKGAVKEVMKFKQRPRFLEFFTQVMLKCMNEERF
HLVVEITVPVHEFLRRRNETLLRVKRAKQKDSAVSKKTKKPFRKFRAAVVEIGRNIDAKN
KRRQKKKDTLRDFLAKNPTIFEMPEHERNKRPDIRKIAYRCLILYLNPIILNYVQRKRFH
QIFLEEMPWRAQMNLYLASTHFNLLLQKLGERPKTKSGTSHAMVSFRSCDPNIFSLYNSG
TVLPTARLTLENXKAMLDFLLTAKKRKANLPSDAEEFSTFVNCKMSEENVSKTQTTNDSD
SLSGFSAKEKDRATNMGPLDHFVKIFLYCRRAMVLAHRGGYWTLLQNCCRAFWNFTRELQ
ILLQQAMDLYKTFPISQDGFLCASVLPFYLGAELLIDMLIQLQNINSIKSVEDKGEFSVP
SCYGNIKHDNGGSSLTFEHPLDDVNVVDLKWIHDFVLKSLEVLYQVEKWETLVSLAIQFN
IISHERYTEQVTPLLVYAQRQLLLRIQKFNGPDVTQQPCARYEAEHGEKITCRNFIGKQL
KINAPVSTVTETRNRPETLKALISSEYCRAKELVCVPVDVTDTLRCFRETLEKSKYHNRS
IRHSRKLLSLFLAQTQGEKSINNLKFSSGRVEFCLGTEEMHMSTPPDLSQEHFRVFSSVE
KSKLPYSQLGLVISSYHQTIDVLHASNQRSLKVQALHTLGNLLIFAGKKRAAFTCWCQAL
DDIFRKPDVLHTWKEFGTSLNNSLPGFKDYSEDFLSKVGIWGCLQGAVISAKIAQFIKTS
NVKKRTNCCILSALLFQGLLRTTLPHPKAERSYAQYEITQLLPGIELFSDIYRADICSVV
ASLFYVIRELHFAKQNLIVLPLLALYQYLVSGICQDLVRNLEARILKIFQSFDSGKPLNS
KENIQAIEELINKGFPIILVSVAQQHLLNKFYFVKAYFLVSVAATINCIPETSVKTNYRG
LSAERSKQNLTNSKEANSREDGYSSCQLTKIRDELTPSTLKAILLSEAEDRFNLLVSEVE
QAGRKNLPQCSAGELEIVVAARLQLAAIALQRHRAAYSAAIVFSILKLLQESKLSKKVGQ
DETENPVSSISPGSENKGDNEFLDPISLNAREYFNIHLWLKCCLALVTAFVAQVRGIGVV
KENDMTDCLSLINEVCMEAKSAGDTELQAEFLMQAVILGLQEKHLKTDIIRNLQDIIHLL
EGSEFISPRSWLTLARSLILLDDLTKAEKLKKSPSSKTEKLNLLNQAHNILIEQMLTFGE
SIEFPLSNTDYANVVLPLKNIYLPHGMLLAKIKMRIGHTMAKQVYYNSKKKDHLKWLPAL
HLLEVALKLCRTTAVEEHEVEAEILFQKGKIERQILMDEKSPTTQLESLFEAIQLSLRND
QNSGLIRDSYLEMALLYFHLKKPRRKMSSPLTLKPPLRRHSSVRESTVNLSEMYNALAWV
VIRAAAQVSEAVLAINLLIGKKNARTDKVNQVTLPNIPEFATVDLLSSYTDYLLDNYQVV
FQTCYFFLYQNDDSCDNTDPRVKATKVDITWILLLRYYIHLQRINNMSKLLASATPVSGI
SLPDDTLLTSLYNSGLILRQKEMHLFLKKYLQLYSSSCIDEFPKELLQGFENSPSLEKVL
YESTTKLYRDSSLQSVLSSWLLSNPSSVDVTAPDTVTQIINRELCFQWYIPPLDRPPKET
EPMVLLLYAYNMKPMKTSDIRHSISSNVCTGSLWIPLTRIISIHEKLSNLAQIAEISLPA
TAEATSNEDIDQVEEGEEKSIDKEMENMILGCCSEIIALFSTDREPTPLSEIPFEVSLLS
IFNLERLFDLANGCIVSHGSLFSWIVSIIP
NT seq
9453 nt
NT seq
+upstream
nt +downstream
nt
atgttcggttgctgcgacaccgtcgccaggcaaccgcgtgtccacacgctccggaccggc
tggggtcggggcagtatgtcggtgccgggcctctactccagttctgtttgctatgaggag
cctctcccttgcatatcgctggcagaacttccaccccctcccccgtcggcgacctcggtg
tccacgtcgcccctggagtccaagacgagcaccccgcgcccgctgctgcgcggtgccagt
cccaaggactcgttgcccccggcctcgttttacgggccgctggacgccaaaaacccgctc
ctggcctccttcgagagggagattcaggagttcttaggttttatgaagaaaaagaaggct
ttagcggcgacggaggaactgaagcacgaattccagcggcgcggtgccacctctttgttt
aatatctggaccaaatacgcccccaggctgccaactgactactacaacgaaaagctcctg
aaggtcggagatagcctttttctaatgaaagagtacaaactggcccttctacagtgctac
gggagatatcttcagcagttcagcatggattttgacgagaacaaggctgatgtgaatgaa
ttcaaagcttccttttttccaaaaggctttggagatgcagctgctggacttacgtttcat
gctttaaatggcaaaaacatttgtagctaccagctggtgtgtgacagcgatgtgaaactg
cagaacaaggagtcggtgagccaatgtctgcagatcctgtcctccctgaggctcgtcatg
caggtggcgctgccgcaggagcacctctgctggatcgtcttcaacgggaccatttacatt
tacaccatttgcagaaaactgatggtcattggccagtcttccaaggccttggaatacctg
ctgtgggccagtgtgtgcatggagtcgtcggtcccactgctgtccatccgctacctgacg
tggagaacgaccctctacactgctgtgtgccagtgctactacgactgccaggctggcatt
cacggagaggcatttgctcggcgtgctttgggcaaaattgatgagttgaggcaactggaa
gtaatgagttcctcaaaatcaaaggaggaatccaagcgctattacagagaggctgcaata
aagatggccgtgatgattttcaaaagagggatatttgaatcaagaagaaaaaacaaaatc
ctctttagaccaaagaccagaattaacctgaaggaagcacaaactttgccatggccacgt
actgtcaccgaacggctgctggatgagatgtttgatagcacttcaatccggtttcttgct
gttttggaggctctttctgactccaacaggcgaatactgcaagctggacctgttgttaca
gatgaagtggagcttcgtgatgtcgtctcagaactgttcatggcagggaaagaactctta
ataatttcaaatatgggtgcaaatggaatatttgatttccccaaaatacctctgatggaa
cttatgatagaaagaaaaaatattatttctctggatgctgctgtgaaatttataaaatta
gcttttacttatgaggaatggagtttatttgaatcggcagcttggcagcttctttgtttt
cttcaggggcaggatgatcccgagtcaaagagagcagagaaagatttgactctcctgatg
gctatagagccactggtcaatgccaagaggaacaaaggtttgatacttcccttggaaaac
tataaagaaggacagacatcgcagatttgtttgaaacgtatctcctttcaggataatttg
gggaagccttctggatattcagaagatattttccatttggcatcgactctgcactcctgt
gtctgctcatctccccaggatgttatgcctgataaagaaatcatcgtggatatgataatg
ttcctttggcagaaatgcaaattaggaattcagcggttcagtatgagtggaagcgactat
gcgaaattcactgtgaaaatcagtactaacaaatggatttatcttctgtggcagctgaat
gaagtaattcagtcctgtaggatggaagacattgacattgtggtggtggcagaggtcaca
ttacgattaagtgaaatattggagtctttaggaaacccagaaagaaaatttaaaacatct
ctagatacactttcaaggaaagccactgaagaatcccttgggactccaaaagggatccca
gaaattcttccaatattaaagaaaaagcctgtggagcagttattttttgcttatgaactt
cttgacaaagcaattgatggaataaatttgaattgcatgttaactactttgccaaatgga
tcatcagtagttgatcactgctatgccaagagcacacatgatgccacaggagacactcac
aaaccaatcacagcaaatagtttcatgatggatttgcatcttgaattaattcaagctcag
caccgaatagctgttgtgcttctcaaccaatggcaagttttgcagactccgactgttagc
aaatgtgttcctacaaaaagtcaggagaagctcaaacaatctggaagcattgattgtttt
acagaatcaagcataatgaataaaataaagaaaaataaaatatccaaagcaatttatttg
atgcagaaagctcttttgatatttgagaaagattcaacttctacatcttcttgggacttt
ttaatggaagcctattctttaattgagaagattgaagcagaacaaaatgccctatattca
catcagacctgtttgaaaagttcaaaaagaaagaaaagcaaagttcctcccccaccgatc
ctgctttcccgaactcactgttctgtgacgctcaaacctgctccgtttgtttctgaggtg
aaggtctcctggtactgcattttgggtcgcaaagcagaaggaagctatggaaaagtgaga
ctaaacaataaccatctcccaaactcaggagaagcgataccagctgatggcagaagcatt
tttgaagtgaaaggtttggaaacaaatgaaaaatacatatttgcagttgctgcttattct
tctaatggaaagcttgttggtgatgctgttggggagacaacaaagccaattttggtttat
ccccctctctctgccgttactgctcgaatgttcctgactcaggttgcctaccaggttggt
aactatgacttggccaagagagttttctcaccagtttggaattcctttgttgcttctcca
cttcaggatgaacaatccgttgtttgcttaagcaatataatgactattacccagagaagg
ttgcatcccgacgttttggcagaaacgtcttcgattttgttatacctttttcttcgaaat
atttttgtgacaagtgacattaaaattaaagaagaaaatcttttctgtgataatatcaaa
ggcaatgaaattttcccctctcaacaaattgccagactgattgaatgtgagagaatatta
gtggccttggaacttagcagcttccttaatgattccagttacacctttcaagctgtgact
caatgttatgggctccttgcacctataatatatcacaatattgtgttggtacctgtcgta
cagattttgataaagtgcatagtgtttttgcaaggactaccgaatattggccactcaaag
aaacatatcttgagttttgaaagtgtacagcacatgatagcttgttgtatcttctacata
acaaagattctgcgttcatggagggaatatgacttggcagtaatgattataaattatgga
aaaaagatgttggatgtcacatcagagtgcaaatctctatttggtaatgctgagcaggat
gaaataccagaggagacttcctctaagaagtctttaaagactaaaaggccccagcagata
ttattgcctgaaaaaataaatgaacagctggccttgttggagacacacctacttaaactg
acaaaacaatttgttgcaccagaactctcaggagcagaggaccctatatttctctaccct
gttgttttgaactggtcagttaaaggcgccgtgaaggaagttatgaaatttaagcagaga
cccagattcttggaattctttacacaagttatgctgaaatgcatgaatgaagaaagattt
caccttgtggtagagataacagttcctgtccatgaatttttgagaaggaggaatgaaacc
cttcttagagtcaaaagagcaaaacaaaaggatagtgctgtttccaaaaagacgaagaaa
cctttcaggaagttcagagctgcagtcgtggagattggaagaaatatagatgcgaaaaac
aaaagaagacagaaaaaaaaggatactctgagggattttttggccaaaaatccaactatt
tttgagatgccggaacatgaaagaaataagagacccgatattagaaaaatagcatatcga
tgcctgatactttacttgaatccaataatactaaattatgttcaaagaaagaggtttcat
caaatatttcttgaggagatgccctggagggctcagatgaacctgtacctggcaagcaca
cacttcaacctgctcctacaaaagctaggggagcgtccaaagacgaaatctggcacctca
catgcaatggtcagtttccgatcatgtgatcctaatatattctcgctgtataattcagga
acagtgttaccaacagcaagactgactttagaaaattagaaagcaatgcttgatttcctt
cttacagctaaaaaaagaaaggccaacttaccatcagatgctgaagaattttctacattt
gttaattgcaaaatgagtgaagaaaatgtatctaagacacaaacaacgaacgactctgat
tcgctgtcaggttttagtgctaaagaaaaggatcgagcaaccaacatgggaccattggac
cactttgtgaaaatcttcttatactgcaggagagcgatggtccttgctcatcgtggtggc
tactggactttgcttcagaactgctgtcgggccttctggaactttacccgggagctccag
atactacttcaacaggccatggatctttacaaaacatttcccatcagccaggatggcttc
ctctgtgcttctgttttaccattctacttgggagccgaattgcttattgacatgttaata
caactgcaaaatatcaattctattaagtctgttgaagacaaaggagagttcagtgttccc
agctgttatggcaatattaaacatgataatggtggttccagccttacttttgagcatcct
ttggatgacgtcaacgtagttgatttgaaatggatccatgactttgttttaaaatctttg
gaagttttatatcaagtggagaaatgggaaacactagtatcacttgccattcagttcaat
ataatttcacatgagagatacacagaacaagtgacaccactcctggtgtatgcacagcgc
cagctgcttctgcggatacagaaattcaatggcccggatgttacccaacagccttgtgca
aggtatgaagctgagcatggagagaagataacttgccgaaattttatcgggaagcaactc
aagattaacgctccggtcagtactgtaacagagacgagaaaccgccccgagacactaaag
gcgctgatctcttcagagtactgtcgggccaaggagcttgtctgcgtgccggtggatgtg
acagacactttgaggtgtttccgagagaccctggaaaaatccaaatatcacaacagatca
atccgccacagcaggaagttgctctcattgtttcttgcccagacacaaggtgagaaaagc
ataaacaacttaaaattcagttccggaagggtggagttttgcctgggcacggaggagatg
cacatgtccacaccgccggacctttcccaggagcacttcagagtgttcagttcagtggaa
aaaagcaaacttccctattcgcaacttggactggtcatttcttcttaccaccaaacgatc
gatgttctgcatgccagcaatcaaagaagtcttaaagttcaggccttgcacacacttgga
aatcttctcatcttcgcgggaaagaaaagggctgcatttacgtgttggtgccaagctctt
gatgacatattcagaaaaccagatgtgctacatacatggaaagaatttggcacctccctc
aacaactcacttccaggattcaaagactacagtgaggactttctctcaaaagttggcatt
tggggctgtttgcaaggagcagtgatatcagcaaaaatagcgcaatttattaagacatcg
aacgttaaaaagagaaccaactgttgcattttgtctgccttactctttcagggtttgctc
aggaccacacttccacaccctaaagccgaacgtagctacgcacagtatgagatcactcag
ctcctccccgggattgagctcttctcagacatatacagggctgacatctgctctgtagtt
gcaagtctgttttacgtcatacgtgaactacactttgctaaacaaaatctaattgttctc
cctcttcttgccttgtaccaatatcttgtttctggaatttgccaggacctagtcagaaac
ctcgaggcaagaattctgaagatatttcaatcatttgactcagggaaacctcttaacagt
aaagaaaatatacaggcaattgaagaattaataaataaaggctttcctataattctggtt
tcagttgcccagcaacatctcttaaataagttttattttgttaaagcatactttcttgta
agtgtggctgcaacaataaattgtatcccagaaacttcagtgaagacaaactaccgtgga
cttagtgcagagcggagcaaacaaaatctcacaaactccaaagaggcaaattcaagggag
gatggatattcatcttgtcagcttacaaaaattagagatgagttgactcctagcacactg
aaggcaatcttactgagtgaagctgaagacaggttcaacttactggtgtcagaggtagag
caggcaggccgcaagaacctccctcaatgcagtgctggggagctggagatcgtggtggcg
gccaggctgcagctggccgcaattgccttgcagagacatcgcgcagcgtacagtgctgca
atagtattttccatacttaagcttctccaggagtcaaaactttcaaagaaggtaggacag
gatgagaccgaaaatcccgtttcttcaatatcacctggttcagaaaataaaggtgacaat
gagtttttggatcctatttccttaaatgctcgagaatatttcaacattcatctgtggttg
aagtgctgcttagcgctggtgactgcatttgtcgcacaggttcgtggcattggagtagtg
aaagagaacgatatgacagattgtttgagcctcatcaatgaagtgtgtatggaggcaaaa
agtgcaggtgacacagagctacaggctgaattcctgatgcaagctgtgatccttggcctg
caagagaagcacttaaagacagacatcataagaaaccttcaggatataatacatttgctc
gaaggaagtgaatttatctctcctcgatcgtggttaactctggcaagaagcctgattttg
ctggatgacttgacaaaagctgagaaactcaagaaatcaccctcttcaaaaacggaaaaa
ttaaatctgttgaaccaggctcacaacattcttattgagcagatgttaacttttggagaa
tcaatcgaatttcctttatcaaacactgattatgcaaatgtagtattgcctttgaaaaac
atctatcttcctcatggcatgttgttggccaaaataaaaatgaggattggacatacaatg
gccaagcaagtgtattataacagcaaaaagaaggaccacttgaagtggctgccggctctt
catcttctcgaagtggctttgaagctctgtaggaccaccgcagtggaggaacacgaggta
gaagctgaaattctttttcagaaaggcaaaatagaacgccaaatactgatggacgagaaa
tcgccaactacgcaacttgaaagtttgttcgaagctatacaacttagcttgagaaatgat
caaaattcagggttgataagagattcataccttgaaatggcactattatattttcatctg
aagaagcccaggagaaagatgtcatcacctttaactcttaagccacctcttagaagacat
agttctgttagagaatcaacagtgaatctatctgaaatgtacaacgcgttggcttgggtc
gtgataagggctgctgcgcaggtcagtgaagctgtgctggcaataaacctacttattgga
aagaagaatgcgagaactgacaaagtgaaccaagtgacattaccaaatatcccagaattt
gccactgtggatcttctgtcttcatacacagattatctgctcgataactaccaggttgtc
ttccagacttgctatttctttttgtatcaaaatgatgactcgtgtgataacacagaccct
agagtcaaggcaaccaaagtggatattacctggatccttctgcttcgctactacattcac
cttcaaaggattaacaatatgagcaagctgctagcatctgcaacaccagtatctggaatt
tctttgccagatgacacactcctcacatctctttataactcgggattgattttacgccaa
aaagaaatgcatcttttccttaaaaaatatttgcaattgtattcttcttcttgtattgat
gaatttccgaaagagcttcttcaaggattcgaaaattcaccttctttagaaaaagtctta
tatgagtcaacaaccaagttatatcgggacagctctctgcagtctgttttatcatcttgg
ctcctctctaacccatcttctgtggacgtgacagcaccagatacggtaacacaaatcata
aaccgagagctctgctttcagtggtacattcctcccctggacagacctccaaaggagacc
gagcccatggttttgttactgtatgcatataacatgaagcccatgaagacttcagacatc
agacattccattagcagcaatgtgtgtaccggctctttatggattccactgactagaata
atttcaattcatgagaaactgtctaatcttgcacaaatagctgagatatcattgccagca
actgctgaagctacttcaaatgaagacatagatcaagtggaggaaggggaagagaagtcc
attgataaagaaatggaaaacatgatccttggatgttgctctgaaataatagctctattt
tcaactgatagagagccaacaccgctctctgagatcccgtttgaagtctcactgttgtct
atattcaatcttgagagactttttgatctcgctaacggttgcattgtgtcacatggaagt
cttttcagctggatagtgtcaatcattccctga
DBGET
integrated database retrieval system
